rtkn2a (rtkn2)


Basic Information

Item Value
gene id rtkn2a
gene name rtkn2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77453710 ~ 77460660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612577.2
GCAGCGGAACGCGTCATCACTGAATTGATAGGAAAAGCACTGGGGGCTTGTCTGGACGAATGGCGAATATGGACTATCAGCGGGACGTTCAAAATTTCAGGAGAAATGCAAGTGCTCGGTCCTCGTGTTCCTCTCTTGCAATGGagataaaaagaaagaaaataagtGAGAGCACTGTATTCTTGCAATCAGAGGACTCTAACATGCAGGAGAAGATAGACTTTGAGATCCGCATGCGGGACGGGACCTACAAGCTCCTGGTGGCCAGCACCAATAGAGAGCAGATCCTGAATGCCTCCAAGAACCTCCTGACCTGCAACACTCGGATCAAGGCCTACATGACAGAAATGCACAAGGAGAACCATGATATGAGAGTCGCATCTCAGAGACTATCAGATCGAGTTTCAGATGATCGTGTGGCCTGCAGAGGAAGAGTGGCCTTGTCTGGGCTGCGCATACCGTTGATGTGGAAAGACTCTGACCACTTTAATAACAAAGGGAGCACGCGGCGGGTTGCCATCTTCTGCCTGATGAGAATTGGATCTGAAGTTTTTGACACTGAGATGGTGGTTGTGGACAGATCGATGACTGATGTTTGTTTTGAGGGTGTAACAGTTTTTAACGGTGTTGGGCCTGCCTTCGAGCTGAAAGTGGAGCTGTATAGCTGTGCCATAGAGGAGGAGACCATCCTGGTCAACACCCCAAAGAAACTGGCCAAGAAGTTACGCAGCTCTTTTGGCAGGGCATCTGGGAGGAAACTCTGCCCCCTGCTTGAAGCTGGAGACCCTGATGCTTTCCTGCAGTCCAACCCAATACCGCTGGGGGCAAGGTACAGCCTGCTGGCGTACACCTCTCTGGGCTTGGCCTGGGCCGATGGGGCCTTCCAGTCCCATTCTCTCATAGTCCTCCAGGATGCTGAGTCGTCCTCCTGGCTGCCCCTCTATGGGAACCTCTGCTGTCGTCTAGTTGCCCAGCCCGTCTGTATGACCCAGGACATGATGAATGGCTATCTGATTCAGCAGCAAAGTGTGGAGGGGCTGTCCCGATACTGCAGCCTGTACTGTGTGCTCAAGGCTGGGAGGCTGTTCTGCTACTACACCCCTGAGGAGATTACTGCCAAGGTGGATCCCAGCCTCATCATACCCACCAACAAGGACACTAGGATCCGTGTGGTGGATAAGGGCCCTCAGAAGAGGTCCAACAGTCTGACCATCACCAACCCAGTGGTGGGGGGGGCTCTGACCAACATCTTCACAACTGACAGCAGGGAGGAGCTGGAGGACTGGATGGAAGCATTCTGGCAGCACTTCTACGACCAGAGTCAGTGGCAGAACTGCTGTAGTGAGCTGATGAAGATTGAGGTTACGTCACCAAAGAAACCCCCACTCTTCCTCACCAAACAGGCTGACTCTGTCTACAATGACCTGAGTATAAATTCTCCTGGAAAGTTTGAGAGTATCACCGACATCATCCACAGCAAAATTGAGGAAACAGGGGGCCACTTCCTCATTGGTGAGGAGGAGGCAAGGGAGCCTCCTAAATGGTCTGCTCTGTTTGACGGGTCCATCCCCATGGTGGTGCAGAAGAGTGTTTTATCTCCGGGCAAAGAGAGTCCCTGTCCCAGCCCAACTCCCAGCTCTGTCTCCAATGACAACAAGAAAAGGCGTGCCCCGCCCCCACCTGCTGACAAGCAGCCTTTCAGCCTCCCACCAGCCAGACCCCCTCCTCCGTATCAGGAAAAGGAGAACGTTGGGGCGCGAACCAAGTCGGGACGACCTTCGCTGGACGCCAAGTTCTCTGCCATCATCCAGCAGCTGCAGAGGAACCCTGGTGGCCTGTCCAGAAAGAACGCCCCCCTGGGCCAGATAGAGCCTCCCCAGCAGGACTTGGAGTACCCCCAGACTCCTGATGTCCCCCACAGGCCTGCCCCCGTCCCTGCTCCACGCAACAAACTGAGGAAGTCCTTTAGGGAGAAGATGAACCCTAAAGCCTGGTGACTGACTGAACCTCACCTGGGACTAAAGCCTGGTGACTGACTGAACCTCACCTGGGATTAAAGCCTGAAGCCAGGGTCACCAGTGGCCCAAATATGCCTTTTAACTTTTACTAATAGGACCTATTTGGGTGTTTTTAGGGACATTTCTTAATGACTAAGCAACCTTCCTTTAATGAAACTGTCTTATTCCAATGTGTGTCCAATAACTCACTGTAGGAATATTATCATGTATAGACTGCAAATACACTTCTGAATGTGGTACCTTTGGGATAAATAATTTTCTCTTGGTATGGTGTGCCTAACAACTATGATAATAGACTATGATAATAGTCCTTAATGCATTGGCCTTTCTAACCGTAATATATCACTGAATCGATATATATTGAACACTTATCAGCGAATAGTGGATCTAATGTAAGCATTGCATGAAATAATCTTATAGGCCAGTAGAGCAGAAAATAATTTCAGTTTTGCACTGCACTCGATATAAGCAGTGGCCTGAAGATTGAAATGGAACAATTCACTTTCTAGCGGACCAAACTAATGCACAGTACACTGTGGCCTGAGCAAGTTATCACTTTGTTTTCTAttctttttaaaaactttttttaatAAGTAGAGCAACAATGCGTTTTAAGGAACTGTTTTGGAATTGTAGATGTATCATTATTGTTCCAAATAATTAGCCATTTATTTAGCCGTTAGCACTTGTTTAGTAGTTAGGCTAGCATTTGCTAAAATACACAGGATTTCAAAGCACCATGCCGTTTgtcattttttaatacattttttaatgcGTATTCGTTAACAATATTCGGTGAAATATGTCTAAAGTTAATGGTTGTACTAGAGTTTTGTTATTGTTAAATGCATATTGTTGATGGTCTGTGTAGCCCTAACGTATTCGATTATCTTGTTTCCCTCTCGTATACTGTAAGATATCTAACGGTCTTTGATGTTGTGGATTAAAATCCATTTCTACTACTTTGATTTGGTCCAACTAATGCTTAATGTGAGCTTTGACTTTAGCCTGCTGACGATCTTGTGCCATT

Function

symbol description
rtkn2 Involved in negative regulation of intrinsic apoptotic signaling pathway; positive regulation of NF-kappaB transcription factor activity; and positive regulation of NIK/NF-kappaB signaling. Located in cytoplasm and nucleus.

NR:

description
rhotekin-2-like

GO: NA

KEGG:

id description
K24024 RTKN; rhotekin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612577.2 True 3048 mRNA 0.48 12 77453710 77460660

Neighbor

gene id symbol gene type direction distance location
tmem26a LOC106577143 coding downstream 96929 77352007 ~ 77356781 (-)
LOC110529831 LOC106577144 coding downstream 139910 77148371 ~ 77313800 (-)
LOC110529822 LOC106577147 coding downstream 311206 77128910 ~ 77142504 (-)
LOC110529797 LOC106577148 coding downstream 334798 77104366 ~ 77118912 (-)
LOC110529788 LOC106577150 coding downstream 350370 77084874 ~ 77103340 (-)
LOC110529928 LOC106577138 coding upstream 23959 77484619 ~ 77487187 (-)
LOC110529949 LOC106577136 coding upstream 65771 77526431 ~ 77535457 (-)
LOC110529957 LOC106577135 coding upstream 74859 77535519 ~ 77542730 (-)
tbc1d12a LOC106577134 coding upstream 146259 77606919 ~ 77623628 (-)
LOC110529991 LOC106577131 coding upstream 235247 77695907 ~ 77735548 (-)
G87077 LOC106577140 non-coding downstream 2406 77447067 ~ 77451304 (-)
G87074 NA non-coding downstream 7085 77438836 ~ 77446625 (-)
G87018 NA non-coding downstream 98508 77354910 ~ 77355202 (-)
G87017 NA non-coding downstream 99957 77353421 ~ 77353753 (-)
G87016 NA non-coding downstream 101946 77350516 ~ 77351764 (-)
G87081 NA non-coding upstream 385 77461045 ~ 77461299 (-)
G87085 NA non-coding upstream 10829 77471489 ~ 77473367 (-)
G87093 aedo non-coding upstream 21851 77482511 ~ 77483926 (-)
G87100 NA non-coding upstream 32476 77493136 ~ 77493369 (-)
G87111 NA non-coding upstream 52657 77513317 ~ 77513986 (-)
G86448 NA other downstream 586112 76866904 ~ 76867598 (-)
G86132 LOC106577062 other downstream 845356 76606682 ~ 76608354 (-)
G86063 NA other downstream 930229 76516251 ~ 76523481 (-)
ccser2a ccser2 other downstream 1053754 76324531 ~ 76399997 (-)
G85866 NA other downstream 1119574 76333468 ~ 76334136 (-)
G87090 NA other upstream 17943 77478603 ~ 77479939 (-)
G89418 NA other upstream 1589151 79049811 ~ 79050491 (-)
G90081 NA other upstream 2074098 79534758 ~ 79535572 (-)
LOC110530200 NA other upstream 2422877 79862081 ~ 79917875 (-)
G90190 NA other upstream 2426015 79886675 ~ 79888180 (-)

Expression


Co-expression Network