LOC110529921 (LOC106577139)


Basic Information

Item Value
gene id LOC110529921
gene name LOC106577139
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77460880 ~ 77468921 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612590.2
TGCACATTATGGGATGAAAGCAACAATAATAATTTAATGGCCTGACAGTTAATAATTTACCATTTGTTATTTATTAACTTAGTTGGCAATTTGTACAGTTACATGACTATTTATTCCATTCAACAAAAACGTATTTTGCGCCGTCAAAAATGCCATCATGTGCAACGCTGCTGTTCTGTTTCAGTAGCCATTAAACGCGACATTTACTAGCAAcattccattgataatttgttgCTGATCGTCACTAGCTAGTATTCTTTCCATCCGCAGCTTCCCAGACGCGTCTACCTTAAAGGAGGTTGGGGAGGCTGTGCTCACTACTCTCACTGACTAACAATTTCCAAAGCGTTCGCAGGACATTTGTGTGGAGGGGGAATTCTagctttttttcttattttttttggcATGACACTGTTATTCAAATACAGGTCGTAGGTGAAATGCAGCAGAAGGTATGTGCCAGGAGGACCTCTCTCTTCACTGAGAATGGACAGGCTCGTGGGGCATCTGCTGACCCCCAGCTCCCATTCAGGTGCCCTCGGTGTGGGGAGCATAAGAGGTTCCGTAGTCTGGCCTCCTTGAGAGCCCACCTGGAATACAGCCACAGTTACTACCACACCATGCACGAGCTGAGCCTTCCGACCCGCAGGGTGCATTCCCACCCAGAGAGAGCCCTGCACGGAGGCTCCCTGAGTGACACACGAGAGGTCACTATCTGCATAGAGAGGTGTCGTATGCACCCTGTGGGGACGCAGGCAGCTGAGGAGATAAAGACTgagaatgaagaggaggaagaggaagaggccaGTAAAGATGGTCTCAAAATCCACAAGTCCAGCCCTGGGAcagatcatatcccttccccctTTCCATTTGACGAACCTCCAGACCCAGGCAGCAAGCTTGAGGTAGTGTTTCCAGAGCGGAATGTCTGTACCGAGGAGATGACGCTCCGGCGCAGGCTGGCCGAGGTCCTACGGGTGGTGGACAGCACCATGCAGAGGAGGCTGCACAGGGTCACCACGGAGCTTGCCAAGACGGACACAGAGCTGCTGTGTGAGTGTGCCCTCTCCCAGCACCTGGCGCAGGAGAGGCAGGAGGTACAGGAGAAGGAGCGGGCGCTGAGCCGGCAGGCGGACGTGGCCATGATGGTGATTGCCACGCTGAAGGAGCAGCTGAAGGAGTCAAAGTACGAGCTGGAGAGGCGAGAACAagACGTCATCACCATTCAGAATTTCCTTGAGGCTGCCACCCAGCATGAGATATGTGGTAAAGTTCGGATCCAATGCTTCATTGAGAACCTGCTTAAACGCATCGCCCTGGCTGAGAGGCTACTGGAGTACTATCAGAGCTCCCCCAGTCCACCGAACTACACAGATTACATGTACCAGACAGCTGAAAACAGACCTCATAGAATCCCCAAAAGCAGGTCAGCGGGTTGTCAGCTGTCACAGTCCTGTCCCCAGGAAGGTAAAACGCACCCCTCCCTATTAGGGCGGAAAGTGGGTCACTCTAGCTACTTCAGACCTGATCACAGAGATGAAGTCTGGACCCAGGGCAGCAGATCAGTTGGATTTGAGGACTAGGTAAGCTGACCAGGGTAGAGAAATGAATGTATATATGATATGTATTTACTCAATGTATAGCTAATACTGAGCAGGGTTGTATCAAAGTCTTTATGGCCATGTGTACGCTGGTTTTTGCTCCATTCTCAAATCTtattttgtcacatgcttcgtaaacaacaggtgtaggctaACAGTGCATTGCTTAATAATGGACCCTTCCCAAAAAtacagagagggggaaaaaatagacaaattaataaatacacaatgagtaacaatcaaatcaaatcaaatgtatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaa
>XM_036986023.1
gccagcatccccgagtcgcctcttcactgttgacgttgagactgattcTGACACTCTTTCTATTCAGCAAAATTCTTAACTTAGGCTACTGTTTGTTCAATTATTTTATTGGCACCAGCGGAGAACATCGGGCATGTTCCGGGTCGTAGGTGAAATGCAGCAGAAGGTATGTGCCAGGAGGACCTCTCTCTTCACTGAGAATGGACAGGCTCGTGGGGCATCTGCTGACCCCCAGCTCCCATTCAGGTGCCCTCGGTGTGGGGAGCATAAGAGGTTCCGTAGTCTGGCCTCCTTGAGAGCCCACCTGGAATACAGCCACAGTTACTACCACACCATGCACGAGCTGAGCCTTCCGACCCGCAGGGTGCATTCCCACCCAGAGAGAGCCCTGCACGGAGGCTCCCTGAGTGACACACGAGAGGTCACTATCTGCATAGAGAGGTGTCGTATGCACCCTGTGGGGACGCAGGCAGCTGAGGAGATAAAGACTgagaatgaagaggaggaagaggaagaggccaGTAAAGATGGTCTCAAAATCCACAAGTCCAGCCCTGGGAcagatcatatcccttccccctTTCCATTTGACGAACCTCCAGACCCAGGCAGCAAGCTTGAGGTAGTGTTTCCAGAGCGGAATGTCTGTACCGAGGAGATGACGCTCCGGCGCAGGCTGGCCGAGGTCCTACGGGTGGTGGACAGCACCATGCAGAGGAGGCTGCACAGGGTCACCACGGAGCTTGCCAAGACGGACACAGAGCTGCTGTGTGAGTGTGCCCTCTCCCAGCACCTGGCGCAGGAGAGGCAGGAGGTACAGGAGAAGGAGCGGGCGCTGAGCCGGCAGGCGGACGTGGCCATGATGGTGATTGCCACGCTGAAGGAGCAGCTGAAGGAGTCAAAGTACGAGCTGGAGAGGCGAGAACAagACGTCATCACCATTCAGAATTTCCTTGAGGCTGCCACCCAGCATGAGATATGTGGTAAAGTTCGGATCCAATGCTTCATTGAGAACCTGCTTAAACGCATCGCCCTGGCTGAGAGGCTACTGGAGTACTATCAGAGCTCCCCCAGTCCACCGAACTACACAGATTACATGTACCAGACAGCTGAAAACAGACCTCATAGAATCCCCAAAAGCAGGTCAGCGGGTTGTCAGCTGTCACAGTCCTGTCCCCAGGAAGGTAAAACGCACCCCTCCCTATTAGGGCGGAAAGTGGGTCACTCTAGCTACTTCAGACCTGATCACAGAGATGAAGTCTGGACCCAGGGCAGCAGATCAGTTGGATTTGAGGACTAGGTAAGCTGACCAGGGTAGAGAAATGAATGTATATATGATATGTATTTACTCAATGTATAGCTAATACTGAGCAGGGTTGTATCAAAGTCTTTATGGCCATGTGTACGCTGGTTTTTGCTCCATTCTCAAATCTtattttgtcacatgcttcgtaaacaacaggtgtaggctaACAGTGCATTGCTTAATAATGGACCCTTCCCAAAAAtacagagagggggaaaaaatagacaaattaataaatacacaatgagtaacaatcaaatcaaatcaaatgtatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaa

Function

NR:

description
protein ZNF365-like

GO: NA

KEGG:

id description
K16737 ZNF365, Su48; protein ZNF365

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612590.2 False 1915 mRNA 0.49 5 77460880 77468921
XM_036986023.1 True 1629 mRNA 0.51 5 77465426 77468921

Neighbor

gene id symbol gene type direction distance location
LOC110529906 LOC106577140 coding upstream 9538 77381858 ~ 77451342 (+)
LOC100136692 cdc2 coding upstream 115337 77339654 ~ 77345543 (+)
LOC118965545 NA coding upstream 173186 77286989 ~ 77287694 (+)
LOC110529780 LOC106577069 coding upstream 412528 77027460 ~ 77048352 (+)
LOC110529720 NA coding upstream 445508 76943550 ~ 77015372 (+)
LOC110529936 aedo coding downstream 13563 77482484 ~ 77484050 (+)
LOC110529943 LOC106577137 coding downstream 25124 77494045 ~ 77502290 (+)
LOC110532710 NA coding downstream 40637 77509558 ~ 77512353 (+)
LOC110522259 LOC106577152 coding downstream 167338 77636259 ~ 77637356 (+)
LOC110529971 LOC106577133 coding downstream 177018 77645939 ~ 77647927 (+)
G86971 rtkn2 non-coding upstream 5580 77453917 ~ 77455300 (+)
G86950 NA non-coding upstream 24611 77376571 ~ 77436269 (+)
G86949 NA non-coding upstream 89195 77371481 ~ 77371685 (+)
G86939 NA non-coding upstream 103243 77357250 ~ 77357637 (+)
G86966 NA non-coding downstream 1077 77469998 ~ 77470747 (+)
G86997 NA non-coding downstream 44898 77513819 ~ 77514118 (+)
G87000 NA non-coding downstream 46602 77515523 ~ 77515771 (+)
G87127 LOC106577135 non-coding downstream 68476 77537397 ~ 77538423 (+)
G87128 LOC106577135 non-coding downstream 70385 77539306 ~ 77539746 (+)
G86614 NA other upstream 336453 77123935 ~ 77124427 (+)
G86019 NA other upstream 824944 76631745 ~ 76635936 (+)
LOC110529610 NA other upstream 1001057 76457821 ~ 76459823 (+)
G83979 NA other upstream 2315368 75144864 ~ 75145512 (+)
G83829 NA other upstream 2346690 75112660 ~ 75114190 (+)
G87159 NA other downstream 101094 77570015 ~ 77570470 (+)
G89667 NA other downstream 2080096 79549017 ~ 79549651 (+)
acoxl acoxl other downstream 2282852 79720751 ~ 79765359 (+)
G91064 NA other downstream 3296193 80765114 ~ 80766155 (+)
G91541 LOC106591086 other downstream 4069410 81538331 ~ 81541400 (+)

Expression


Co-expression Network