LOC110529928 (LOC106577138)


Basic Information

Item Value
gene id LOC110529928
gene name LOC106577138
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77484619 ~ 77487187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612603.2
TTAAATGCATTTTACAATATTGCATCCCCATAATATAACGAGATGAGATGATATTTCCCACGCGTAGGGAACACTATATGATATGGCAGAGAATACAGCATTGGAGAGTTTTTACCATGACAGCTGAAGGTTATATATTGTGTGCGTAAAGGCGCGTAAAGGCTTGAAGCGCACTGTATTGTCAAAAAAATGACAGCTAAAACTATTGACAAAGTTTGGGTACCCACCAGTAGTTTTATACAAGACATTCAAGAGGTAATCTATTCAATGGAAGAGGAAATATCCGCATCATTGCCAGAGACGGGAACTGGGTTAAAAGTTGAGTCATATTGGAAACAGCACGACCAATTGGGTGAAACCAAGGGGGGTGATTGTTTTAGTGAAGAAAGGGGCACCCTCGAGTTTATTTACCAGGGCAACTTTACGCAGCCACCGCGCACTCAGGCTGTGGCATACACCGGGAAGGTCTCGATCAATTCTAGAGGTGTAGAATACTGGAATCCCGGGGGTGCCATTAACGTAGCTAGTGCTGACATAAGGGTGGCAGCTTCGTCCCCGGTGTCTATCTCGCCCTCGCCTGAACCACCAAACCTTTACGCAGGAACTGTGAGCTGCACCATGGCGCAGAGTCAACACGATATAAACCACATGTATGCTACGCCGTCTTACTCTTGTACCGGGGAAATGTACCAGGATCAATCAACCTACCTGGCAACGTCGACCTGCCCCATGTCTTATCCACAGCCGTCGTACTCATCCTATACATCACCAAAGTCGACAGTGGACAGCGCACTCTTAAACATCATGCCTGACTACAGCGGGTTCTTCCAGCCAAACTGCCAACGAGACATCCAGGCATTTCCTGACAGGAAAGCGTTACCATATTCACTGGACTCTCTGAGGGTTCCACCACCTCTGACACCTCTGAACACAATAAGGAATTTTACGCTTGGGGGACCTGCGATAGAGGGCCCTTGTCCACCAAATCCCTACAACACTTCGAACTTACCCCTGAGGCCAATATTGAGACCGAGAAAGTATCCAAACCTCCCAAGCAAAACGCCTGTCCATGAGCGACCATACCCTTGCCCAGCAGAGAGCTGCGATAGGAGGTTCTCGCGGTCGGACGAGCTGAGCAGACACGTTAGGATCCACACAGGGCACAAACCCTTCCAGTGTCGGATCTGCATGCGCAGTTTCAGTCGCAGCGACCACCTCACTACGCACATCCGGACACACACTGGAGAAAAACCCTTCTCCTGCGACCACTGTGGAAGAAAGTTTGCCAGGAGTGATGAAAGAAGGAGACACACGAAAATCCACttaagacagaaagagaaaaagtCATCATAATGACCCAGGCAGAATGGTTTTAAACATTCAGATAAATTATGTTTCCCTGCAGCACCAATTAATTAAATAATATCCAAATCAAACATTCACACTGAATTTAGCAGACTAGGGTTAATTAAGGTTGACTAATGCATTTTGATATATGGTGCTGAATGAATAACAACATAAACGGACAGagctatcacatttacattaggtATAGAATACATTTTTTCATAACTTAACTGTAAATGTGCACAAACACAAGTGCTCAGTATAGAAAGTGTTTCAATAGAGTAGGTGGGGAAATAGTCAGAGATGCTGAATAGCCAGCAAGGAGCAAGACTCAGCTCCAACACTGAGTGGTATCAGCCAGCAAGTAGCCTCACTTTTGCCAGTGTTGAGAGACTTCCCACAAGAGATGAGTGATGAGATGAGTGAATACCATGATGGGTATTCCTGCATTATAGCTGGTAAAGGAGTGCCATGACCAATATCACAGAGCTGAGTGGTCTGGCCAGGGGCATGTAGTTCCTGTATATTATCCTCACATCCAGTTTTGAGAGTGGGGGGTTAGAGTCCCATGTGTGTAAAAACTGGAAGCCCTGTACTGTCAAGAGAGACAATTAAGAACTGAATTGCTCaagttttcatttaaaaaaaaatctcctaTTACTTGTTGGATGAAGATGAAAGTAAAATCTGTGTAAGATCATTACAGGAAGTAACTAAGGAGAAGTACGTTCATTTGACATGCgtcatttgacatgtttttacacacacattGTTCTTTAACTGATTTGATGCTTCTTGCAATAAATGTAGAATATGTTGTCGTAGGTGACATA

Function

NR:

description
early growth response protein 2b-like

GO:

id name namespace
GO:0048168 regulation of neuronal synaptic plasticity biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0071320 cellular response to cAMP biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0071371 cellular response to gonadotropin stimulus biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0035914 skeletal muscle cell differentiation biological_process
GO:0048932 myelination of posterior lateral line nerve axons biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005488 binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09203 EGR1; early growth response protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612603.2 True 2180 mRNA 0.44 2 77484619 77487187

Neighbor

gene id symbol gene type direction distance location
rtkn2a rtkn2 coding downstream 23959 77453710 ~ 77460660 (-)
tmem26a LOC106577143 coding downstream 127838 77352007 ~ 77356781 (-)
LOC110529831 LOC106577144 coding downstream 170819 77148371 ~ 77313800 (-)
LOC110529822 LOC106577147 coding downstream 342115 77128910 ~ 77142504 (-)
LOC110529797 LOC106577148 coding downstream 365707 77104366 ~ 77118912 (-)
LOC110529949 LOC106577136 coding upstream 39244 77526431 ~ 77535457 (-)
LOC110529957 LOC106577135 coding upstream 48332 77535519 ~ 77542730 (-)
tbc1d12a LOC106577134 coding upstream 119732 77606919 ~ 77623628 (-)
LOC110529991 LOC106577131 coding upstream 208720 77695907 ~ 77735548 (-)
sh2d4ba LOC106577151 coding upstream 278757 77765944 ~ 77782971 (-)
G87093 aedo non-coding downstream 693 77482511 ~ 77483926 (-)
G87085 NA non-coding downstream 11252 77471489 ~ 77473367 (-)
G87081 NA non-coding downstream 23320 77461045 ~ 77461299 (-)
G87077 LOC106577140 non-coding downstream 33315 77447067 ~ 77451304 (-)
G87074 NA non-coding downstream 37994 77438836 ~ 77446625 (-)
G87100 NA non-coding upstream 5949 77493136 ~ 77493369 (-)
G87111 NA non-coding upstream 26130 77513317 ~ 77513986 (-)
G87113 NA non-coding upstream 30258 77517445 ~ 77517657 (-)
G87140 NA non-coding upstream 57993 77545180 ~ 77545382 (-)
G87090 NA other downstream 4680 77478603 ~ 77479939 (-)
G86448 NA other downstream 617021 76866904 ~ 76867598 (-)
G86132 LOC106577062 other downstream 876265 76606682 ~ 76608354 (-)
G86063 NA other downstream 961138 76516251 ~ 76523481 (-)
ccser2a ccser2 other downstream 1084663 76324531 ~ 76399997 (-)
G89418 NA other upstream 1562624 79049811 ~ 79050491 (-)
G90081 NA other upstream 2047571 79534758 ~ 79535572 (-)
LOC110530200 NA other upstream 2396350 79862081 ~ 79917875 (-)
G90190 NA other upstream 2399488 79886675 ~ 79888180 (-)
G90382 NA other upstream 2654372 80141559 ~ 80142157 (-)

Expression


Co-expression Network