LOC110529949 (LOC106577136)


Basic Information

Item Value
gene id LOC110529949
gene name LOC106577136
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77526431 ~ 77535457 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612639.2
GAGCAAAAGCAACACAATTAAACATGAACTCTGAGTGAACTAATTTGTCCGGCCCAAGGTAAGATGAGGCATGGTTGGGGGAAACGGGCGAATAAAAGCGCAGAATGGAGGGTGAGACACAACAGTCAAGTGCAACACTTGGCTACTTCCACTCCCCGTGGTCCACTCCCCGCCGTCCATCTTGCACTTGTTTCACAAGATTCTCCTAGAGATGGGGTTCGGCGCTTTATTCATAACATGTTTTTGCACTCTCGTGCTCCCACTCCTTTTGATCGTGGCGGCGATGAAACTGTGGGAAATGTACGTCGTTAGTGGACGTGATCCAACCTGTCAGAGTCCTCTTCCTCCGGGTACCATGGGACTGCCCTTCCTCGGAGAGACGCTTCAGATGGTCCTGCAGAGaagaacatttctaaaaatgaaACGTCAGAAATATGGATATATTTATAAGACGCATCTCTTTGGGAGTCCAACCGTGAGGATAATGGGTTCAGAACATGTGAAACAGATTCTGATGTCAGAACACAAATTGGTTGCGGCTCAGTGGCCAGCATCAGTGCGACTCATCCTCGGGTCGCACGCCCTCTCCAATGCGCACGGCGCGCTCCACAAGCGCAAGAAAAAGGCGATCATAAAAGCCTTTTCCCGGGAAGCCATGGAACAGTATATTCCTGTGATCCGGGAGGAGGTGAGATGCTCCGTGGATAACTGGCTGCAGAGCGACTCTTGCGTGCTAATGTACCCAGAGATGAAGCGCCTCATGTTCCGCATCGCAATGAGGATCCTGCTTGGCTTCGAGCCCGAGCAATCAAAGACCGACGAGCTGGAATTAGTGGAAGTGTTCGAAGAAATGATAAAGAACCTTTTCTCCCTACCAATCGATGTTCCTTTCAGCGGCTTGTATCGGGGTCTGAGAGCGCGCAACATCATCCACTCAAAAATAGagcaaaacattaaaaaaaagctTTCCAATATTGATAACAACAACAATTATAAGGATGCGCTGCAATTATTGATTGAGGACGGTGAGAGGAAGGAGCAGCGAGTAAGCATGGAGGAGATAAAAGAATCTGCCACAGAATTACTATTCGGTGGCCACGAGACGACAGCGAGCACTGCGACCTCTCTGGTGATGTTTCTCGGGCTGCATGCGAATGTCGTGCGTAAAATGCGCCATGAGCTTCAGGAGAAGCATTTGTTGGGAGCCCAATCAGAGGACAAACCCCTGAGTACTGAGTTGTTGGAGCAGTTGAAGTACACCGGCTGTGTCATTAAGGAAACTCTCCGGATCAACCCTCCTGTCCCTGGTGGCTTCCGTGTAGTACTGAAGACTTTTGAGCTTAATGGCTACCAGATTCCCAGGGGTTGGAAAATCATCTACAGCATCTGCGACACTCACGACGTGCTGGACACACTTATTAATAAGGAGGAGTTTCAGCCAGAGAGGTTTATGGACAAGTCACCAGATGACTCCTCCCGGTTCGGTTACATCCCCTTTGGGGGTGGTGCGAGGACATGTGTGGGTAAAGAGTTTGCTAAAGTTTTACTTAAGGTGTTCCTGGTCGAGGTGGTCACCAGATGCGACTGGACATTGTTGAATGGACCACCGACAATGAAAACAGGCCCAACCGTTTATCCAGTGGACAATCTGCCCACAAAATTCACCAAATGTATCCAGACCTACTGATAATGAAATATTGGCATTTATGTATTGGCATTTATGTAAATACACTAAATATTTAAGATAGACATATTGTGTATTTtttatattacatatattttgTACGACAGATATTTATGTCAACCCCAGTAGCGTTGTAAAAGCAACATTTTTAAAAGCACTTCATGTTGCACTCCAATAGTTCTGAGACAAATCATTTTATGGATATTTTGAAATACAATTGTTTTAAAGCGGTACTTTATCATTTTCATGCAACTTAACTCTGTTGTTGCATGTggaatgttttcaataaacacaTGGAAAACTATTATTTTGAACAAAACTATTTCCATTTCCCAAATATTCTGACTTGGCATTGATAGAGCCCACCCACTGTGCACATTTGGTTgatgtgaattcaatgtgaaatcatcAACACATTTCACCATGCCATTgaatttatattaaaaaaatggaatt

Function

NR:

description
cytochrome P450 26A1-like

GO:

id name namespace
GO:0021797 forebrain anterior/posterior pattern specification biological_process
GO:0071299 cellular response to vitamin A biological_process
GO:0001756 somitogenesis biological_process
GO:0003131 mesodermal-endodermal cell signaling biological_process
GO:0031016 pancreas development biological_process
GO:0048854 brain morphogenesis biological_process
GO:0021661 rhombomere 4 morphogenesis biological_process
GO:0001568 blood vessel development biological_process
GO:0042574 retinal metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0034653 retinoic acid catabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0008401 retinoic acid 4-hydroxylase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612639.2 True 2140 mRNA 0.45 7 77526431 77535457

Neighbor

gene id symbol gene type direction distance location
LOC110529928 LOC106577138 coding downstream 39244 77484619 ~ 77487187 (-)
rtkn2a rtkn2 coding downstream 65771 77453710 ~ 77460660 (-)
tmem26a LOC106577143 coding downstream 169650 77352007 ~ 77356781 (-)
LOC110529831 LOC106577144 coding downstream 212631 77148371 ~ 77313800 (-)
LOC110529822 LOC106577147 coding downstream 383927 77128910 ~ 77142504 (-)
LOC110529957 LOC106577135 coding upstream 62 77535519 ~ 77542730 (-)
tbc1d12a LOC106577134 coding upstream 71462 77606919 ~ 77623628 (-)
LOC110529991 LOC106577131 coding upstream 160450 77695907 ~ 77735548 (-)
sh2d4ba LOC106577151 coding upstream 230487 77765944 ~ 77782971 (-)
LOC110529998 LOC106577125 coding upstream 389079 77924536 ~ 78308978 (-)
G87113 NA non-coding downstream 8774 77517445 ~ 77517657 (-)
G87111 NA non-coding downstream 12445 77513317 ~ 77513986 (-)
G87100 NA non-coding downstream 33062 77493136 ~ 77493369 (-)
G87093 aedo non-coding downstream 42505 77482511 ~ 77483926 (-)
G87085 NA non-coding downstream 53064 77471489 ~ 77473367 (-)
G87140 NA non-coding upstream 9723 77545180 ~ 77545382 (-)
G87141 NA non-coding upstream 9944 77545401 ~ 77545633 (-)
G87322 NA non-coding upstream 33872 77569329 ~ 77570010 (-)
G87363 LOC106577133 non-coding upstream 110464 77645921 ~ 77647885 (-)
G87090 NA other downstream 46492 77478603 ~ 77479939 (-)
G86448 NA other downstream 658833 76866904 ~ 76867598 (-)
G86132 LOC106577062 other downstream 918077 76606682 ~ 76608354 (-)
G86063 NA other downstream 1002950 76516251 ~ 76523481 (-)
ccser2a ccser2 other downstream 1126475 76324531 ~ 76399997 (-)
G89418 NA other upstream 1514354 79049811 ~ 79050491 (-)
G90081 NA other upstream 1999301 79534758 ~ 79535572 (-)
LOC110530200 NA other upstream 2348080 79862081 ~ 79917875 (-)
G90190 NA other upstream 2351218 79886675 ~ 79888180 (-)
G90382 NA other upstream 2606102 80141559 ~ 80142157 (-)

Expression


Co-expression Network