LOC110529957 (LOC106577135)


Basic Information

Item Value
gene id LOC110529957
gene name LOC106577135
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77535519 ~ 77542730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612649.2
ACGCACTTTCAAAGCCGCATCGCTCGCGCTCACTCAATCTCCGAGTGCTATCACAAACTTTTCTCCAATCCTGGCGATTTAACGAGCTctttagatatatatatttttttaaaacgtTATACGTCATCTGCGAAGGTGGATCATGTAGTGTTCCAATATTTATAAAGCTCCGTGCGAACAATACATTTTGGAGGAGGAAAGAGACCTTTAAGGACGAGTTTCTCGTTGCTGTCAGCGACTTGGTTCCACGTTTAAGACAAGAGAAAAGAAGCACGAGTCAGACTTCACACAGTAGCACGTGGATTTTTGGAGATGTTCCTTCTGGAGCTCAATCACTTGTCAGCGCTGGTCACTGCGCTCACATCAGTGCTCTCCGCCCTGATCTTGCTTGCCGTCTCCAGGCAACTGTGGACCTTCCGGTGGACCATTACGCGGGACACAGAGAGCAAGTTGCCGCTACCCAATGGGTCCATGGGCTGGCCGCTGGTGGGAGAAACGTTCCACTGGCTCTTTCAGGGGTCCAACTTCCACATCTCCAGGAGAGAGAAGCATGGCAACGTTTTTAAAACTCACCTTTTAGGAAAGCCTGTTATCCGGGTGACTGGTGCCGAAAACATCCGTAAAATCTTGCTTGGAGAACACAACTTGGTTTGCACGCAGTGGCCTCAGAGTACCCGTATTATCCTGGGACCCGACACCCTGGTCAACTCTATTGGAGATTTGCACAAGAAGAAGAGAAAAATCTTGGCAAAAGTCTTTAGCCGCGGGGCCTTGGAGACTTACCTACCTCGCTTGCAAGATGTTGTCAAGTCTGAAATTGCAAAGTGGTGCTCAGAGCCTGGCCCAGTGAATGTTTACGTCTCAGCCAAGTCTCTCACATTTCGCATTGCTGTCAGAGTCTTGTTGGGACTGAAGATGGAGGAAAAACGCATAGTTTACCTGTCTAAGATCTTTGAGCAACTCATGAACAACCTCTTCTCACTACCAATTGACGCACCTATGAGTGGACTCCGCAAAGGAATAGAAGCCCGGGAAATCCTACATGCGTGCATGGAGAAAATCATAGAGGAGAAAATGCAGAAACAACAGTCTGATGAGTACTATGATGCTTTCGATTACATGTTGATCAGTGCCAAGGAAAATGGAAATGAACTCAGCATGCAGGAGTTGAAGGAAACCGCGGTGGAGTTAATATTTGCTGCTCACTCAACtacagccagtgcctccacttcGCTTATTCTTCAACTCCTGCGGCACCCCGCTGTGGTGGAGAAAGCCCAGATGGAGCTGGAGTCCGAGGGTCTCGGCTACGAAGCACATAGCGCCCACAGATGCTCCGGCAAAGAAAATGGTCTGAAAGGTCCTCTTGCGGCGGAACATGAGGAACATCGGCCTCTAGACGCAGAGGACACCCTGTTGATGAATGGGAACGGGACTGTTAATTGCGCActggatgaagaagaagaagcacgGTGTTCTCGGTCTCATATTCCTTGTTTAACTTTGGAGAAACTGAGTCAGCTACGTTACATTGAATGTGTCGTCAAGGAGGTCCTGCGGTTTCTCCCGCCAGTGTCTGGAGGATACAGGACGGTGCTACGAACATTCGAATTGAACGGCTACCAGATTCCTAAAGGATGGAGTGTAATGTACAGTATCCGGGACACCCATGAGACAGCTGCAGTGTTCCAGAGACCGGAGATCTTCGACCCAGACCGCTTCGGGCCGGAGCGTGACGAGAGCAAGACTGGGCGCTTCAATTACATTCCATTTGGTGGCGGAATAAGGAGTTGCGTCGGAAAGGAACTTGCCCAAATGATACTAAAAACCCTGGCAGTTGAGGTGATTGGCACGTGCAACTGGACACTCGCCACGGAAACATTCCCCAAGATGCAGACGGTGCCAATAGTCCACCCCGTCAATGGACTGCATGTGCATTTCAATTACGCATAGCCAACTCCGATAGTTTAGAGATGTCATTGTGTTAttattaaaaacattaacattaagCTCATTAACTTTCCGCAATTGCAATATTAAGTTATTCAATTTGAATACATCAGCAAGAACCCTATGCTGTGAGAAACACGGTGGTCATTGTAGAGTGGAACCAATGCATGGTGCCAGTGGCCTGTGATGATCTGCTTATCGCCAAGATCGCCTTTTTACGCAATGGGAAAAGTGACTCCATACATTTGCTATTCTTCACGGACATCCGGGCGCCCACTTCCATAACAAAGCAAATCGAAAAGTGATAGCCTATATTTCAGCACCATAATGCAATATACAATGGACGAGTAGGGCTTTCCTCTCAGAACAAACATTATTTGTGCTCAGGACTGATTATAAATATCCGTCTATAATACGAAATTGTCTTTCAGATCTTGCACTTGGTCTCCACGAAAGACTTTCAGAAATACATTCCAAATGTATGTGTTTATGTCCAGTATGTAAGTAGATTGAAATGagatataggcctacatttatagGCTAAataagtgtatgtgtgtatgaaaTGAAGTAGTATTACAAATAAGCTTTATTTATAGAACACTTCGGTTAAGTCGGTGTACATATGGAATAATAATGAAGAGGCCTAGTTATTTATAATCAATGTAAAGCATAGACCGGTAAAACAAACCATAGGCATGGAGTATCGCTAATTATTTGATTATAAAGTCTATAAATCAAAATGCAATTATATAAACTTACCTAGAGAAAATAACCAATTATTATTTGTATTCTTCTTATTATTACATGTTCCATCATTATGAATAATCGTTTGTTGATTTTAAAGCATGATGGAAGCGCTGTGAAATGACCCGGTTAAGATGGATTCATGGAAGGAGATAGCACTTTTTCTCCTTTACggagtgtgtatatacagtatttgttCTATTgattgaatgtgtgtatttttgtgtagATGTTGCTCGTATTATCTATAGAACGATGTAAAAGGTAAATTacaaaaaaagtgtatttctGCCATAGAATAGGACATTTTACCATACAAAATGTGCATTTGCTGCCATCATGTTAACCACAATGTATAGATTCCCGTTCTATAAAAAGACCAATATGGACTTGTTTATAGATAAAATTGTTAAGGTTttgataatatgacatttgataAGTGTGCCAGTATTGTCACAGTATAAGCCTATACAATATATAAtgaaatgtgttgttgtttttaatatGAGATGCCAAAATATAGTCAATTGTAAGCGTAGTGTATAGCCTTAGTGGTTAGTTGGGTCTGTTTTCGTTCGCCAACTCATGTCATTGAATTCCATAACCACAAGAACGATTTGCATATCATTTGACAGGCTCCGCCCCCGAAGATAAATGGAACCTGAAAGGTTACACCTTCAGAGTGAACTCGGATTGCAGTGTGACCCTCTAGTGAACCATTTAACTCTGCCCTATTGACCCTCAGTTTAGGTGACGCTTTGTTAACTGTGCGTTCACGAGCAGTGACCACAACACCAATGATATCTCACAACATAATTTCCACACCAAAGAATTCTAGACCTATAGGTCACTATCTGACTTTCCTCCATAGACGACTGAAATTATTAATTGTAGGTAAGACACTTGATTTAAACCCTCAGACCACCCACGTTTAACAGAACTACCCCCTCCcttccacacacccacacacacacacacacacacacacacactcccgctatcttcctctctctctcgctctctcttaccAAGTTAAAACCGACAGTGTAAAATGACCCTTCTCAAATTACCTCCAAAAAGGTTGAAATGATTCTAAATTGTAGGCTATACCCTATAGGTTAATTGAGACATTGAAAAACAATGTATGAAATCCTGACGTCAATAGGCCTATAGATTGAGATAATGTATGATTATGCACTCAATTTGATTGTCATGATTGACAGAATAGACGACTGTGAAGATGATGGCGCGATCCTAATTATGAGTGGTAAAGGGCCCTGTAACTCGTCATTTGGTGGGCAGTGAACTTGGCGACGTTTTGGCACCAGAGTTCACACGGATGTCACGGTCCGTGTTGTAGGTCACAGGCAGGGCAACGCATAGAAATGGGACAGAGCGTCCCTGCCCCCAAATCTGTTGGAATCGCGCTGCGGTAATGGGTTTTAAACACAGGGTGCACAGAGAACGGTGATTTGGAGAGTGTTAGATGGCATCGCCATTTCAAAGTAATCTATTCATTAACAGTACACCCCGTAGAGTAAACTAAATACAAAGCATGAATCCGTTACCGCTAGAAAAATATAGGACAATACATTGATATTAATACAAAGTGAACACAGATGCAGCGCTTGTCCTAGCCTATTGACACATGTGTCAAGCCTGGATGTCCCCTTCATGGACACAAGTGTCTCTCGGAAGTATAATAGGCCAAATGTTCTATTAACATAATCAAGCCCGATCAGTCTCAGACTAGGGGATTCAGCTTGTAAACGAAGAACACGATATATTGGGTAACCGATTAGGTATTTTCCAAAGTAAAATGTTTGTATTCTATTGTGGGG
>XM_036986057.1
ACGCACTTTCAAAGCCGCATCGCTCGCGCTCACTCAATCTCCGAGTGCTATCACAAACTTTTCTCCAATCCTGGCGATTTAACGAGCTctttagatatatatatttttttaaaacgtTATACGTCATCTGCGAAGGTGGATCATGTAGTGTTCCAATATTTATAAAGCTCCGTGCGAACAATACATTTTGGAGGAGGAAAGAGACCTTTAAGGACGAGTTTCTCGTTGCTGTCAGCGACTTGGTTCCACGTTTAAGACAAGGCAACTGTGGACCTTCCGGTGGACCATTACGCGGGACACAGAGAGCAAGTTGCCGCTACCCAATGGGTCCATGGGCTGGCCGCTGGTGGGAGAAACGTTCCACTGGCTCTTTCAGGGGTCCAACTTCCACATCTCCAGGAGAGAGAAGCATGGCAACGTTTTTAAAACTCACCTTTTAGGAAAGCCTGTTATCCGGGTGACTGGTGCCGAAAACATCCGTAAAATCTTGCTTGGAGAACACAACTTGGTTTGCACGCAGTGGCCTCAGAGTACCCGTATTATCCTGGGACCCGACACCCTGGTCAACTCTATTGGAGATTTGCACAAGAAGAAGAGAAAAATCTTGGCAAAAGTCTTTAGCCGCGGGGCCTTGGAGACTTACCTACCTCGCTTGCAAGATGTTGTCAAGTCTGAAATTGCAAAGTGGTGCTCAGAGCCTGGCCCAGTGAATGTTTACGTCTCAGCCAAGTCTCTCACATTTCGCATTGCTGTCAGAGTCTTGTTGGGACTGAAGATGGAGGAAAAACGCATAGTTTACCTGTCTAAGATCTTTGAGCAACTCATGAACAACCTCTTCTCACTACCAATTGACGCACCTATGAGTGGACTCCGCAAAGGAATAGAAGCCCGGGAAATCCTACATGCGTGCATGGAGAAAATCATAGAGGAGAAAATGCAGAAACAACAGTCTGATGAGTACTATGATGCTTTCGATTACATGTTGATCAGTGCCAAGGAAAATGGAAATGAACTCAGCATGCAGGAGTTGAAGGAAACCGCGGTGGAGTTAATATTTGCTGCTCACTCAACtacagccagtgcctccacttcGCTTATTCTTCAACTCCTGCGGCACCCCGCTGTGGTGGAGAAAGCCCAGATGGAGCTGGAGTCCGAGGGTCTCGGCTACGAAGCACATAGCGCCCACAGATGCTCCGGCAAAGAAAATGGTCTGAAAGGTCCTCTTGCGGCGGAACATGAGGAACATCGGCCTCTAGACGCAGAGGACACCCTGTTGATGAATGGGAACGGGACTGTTAATTGCGCActggatgaagaagaagaagcacgGTGTTCTCGGTCTCATATTCCTTGTTTAACTTTGGAGAAACTGAGTCAGCTACGTTACATTGAATGTGTCGTCAAGGAGGTCCTGCGGTTTCTCCCGCCAGTGTCTGGAGGATACAGGACGGTGCTACGAACATTCGAATTGAACGGCTACCAGATTCCTAAAGGATGGAGTGTAATGTACAGTATCCGGGACACCCATGAGACAGCTGCAGTGTTCCAGAGACCGGAGATCTTCGACCCAGACCGCTTCGGGCCGGAGCGTGACGAGAGCAAGACTGGGCGCTTCAATTACATTCCATTTGGTGGCGGAATAAGGAGTTGCGTCGGAAAGGAACTTGCCCAAATGATACTAAAAACCCTGGCAGTTGAGGTGATTGGCACGTGCAACTGGACACTCGCCACGGAAACATTCCCCAAGATGCAGACGGTGCCAATAGTCCACCCCGTCAATGGACTGCATGTGCATTTCAATTACGCATAGCCAACTCCGATAGTTTAGAGATGTCATTGTGTTAttattaaaaacattaacattaagCTCATTAACTTTCCGCAATTGCAATATTAAGTTATTCAATTTGAATACATCAGCAAGAACCCTATGCTGTGAGAAACACGGTGGTCATTGTAGAGTGGAACCAATGCATGGTGCCAGTGGCCTGTGATGATCTGCTTATCGCCAAGATCGCCTTTTTACGCAATGGGAAAAGTGACTCCATACATTTGCTATTCTTCACGGACATCCGGGCGCCCACTTCCATAACAAAGCAAATCGAAAAGTGATAGCCTATATTTCAGCACCATAATGCAATATACAATGGACGAGTAGGGCTTTCCTCTCAGAACAAACATTATTTGTGCTCAGGACTGATTATAAATATCCGTCTATAATACGAAATTGTCTTTCAGATCTTGCACTTGGTCTCCACGAAAGACTTTCAGAAATACATTCCAAATGTATGTGTTTATGTCCAGTATGTAAGTAGATTGAAATGagatataggcctacatttatagGCTAAataagtgtatgtgtgtatgaaaTGAAGTAGTATTACAAATAAGCTTTATTTATAGAACACTTCGGTTAAGTCGGTGTACATATGGAATAATAATGAAGAGGCCTAGTTATTTATAATCAATGTAAAGCATAGACCGGTAAAACAAACCATAGGCATGGAGTATCGCTAATTATTTGATTATAAAGTCTATAAATCAAAATGCAATTATATAAACTTACCTAGAGAAAATAACCAATTATTATTTGTATTCTTCTTATTATTACATGTTCCATCATTATGAATAATCGTTTGTTGATTTTAAAGCATGATGGAAGCGCTGTGAAATGACCCGGTTAAGATGGATTCATGGAAGGAGATAGCACTTTTTCTCCTTTACggagtgtgtatatacagtatttgttCTATTgattgaatgtgtgtatttttgtgtagATGTTGCTCGTATTATCTATAGAACGATGTAAAAGGTAAATTacaaaaaaagtgtatttctGCCATAGAATAGGACATTTTACCATACAAAATGTGCATTTGCTGCCATCATGTTAACCACAATGTATAGATTCCCGTTCTATAAAAAGACCAATATGGACTTGTTTATAGATAAAATTGTTAAGGTTttgataatatgacatttgataAGTGTGCCAGTATTGTCACAGTATAAGCCTATACAATATATAAtgaaatgtgttgttgtttttaatatGAGATGCCAAAATATAGTCAATTGTAAGCGTAGTGTATAGCCTTAGTGGTTAGTTGGGTCTGTTTTCGTTCGCCAACTCATGTCATTGAATTCCATAACCACAAGAACGATTTGCATATCATTTGACAGGCTCCGCCCCCGAAGATAAATGGAACCTGAAAGGTTACACCTTCAGAGTGAACTCGGATTGCAGTGTGACCCTCTAGTGAACCATTTAACTCTGCCCTATTGACCCTCAGTTTAGGTGACGCTTTGTTAACTGTGCGTTCACGAGCAGTGACCACAACACCAATGATATCTCACAACATAATTTCCACACCAAAGAATTCTAGACCTATAGGTCACTATCTGACTTTCCTCCATAGACGACTGAAATTATTAATTGTAGGTAAGACACTTGATTTAAACCCTCAGACCACCCACGTTTAACAGAACTACCCCCTCCcttccacacacccacacacacacacacacacacacacacactcccgctatcttcctctctctctcgctctctcttaccAAGTTAAAACCGACAGTGTAAAATGACCCTTCTCAAATTACCTCCAAAAAGGTTGAAATGATTCTAAATTGTAGGCTATACCCTATAGGTTAATTGAGACATTGAAAAACAATGTATGAAATCCTGACGTCAATAGGCCTATAGATTGAGATAATGTATGATTATGCACTCAATTTGATTGTCATGATTGACAGAATAGACGACTGTGAAGATGATGGCGCGATCCTAATTATGAGTGGTAAAGGGCCCTGTAACTCGTCATTTGGTGGGCAGTGAACTTGGCGACGTTTTGGCACCAGAGTTCACACGGATGTCACGGTCCGTGTTGTAGGTCACAGGCAGGGCAACGCATAGAAATGGGACAGAGCGTCCCTGCCCCCAAATCTGTTGGAATCGCGCTGCGGTAATGGGTTTTAAACACAGGGTGCACAGAGAACGGTGATTTGGAGAGTGTTAGATGGCATCGCCATTTCAAAGTAATCTATTCATTAACAGTACACCCCGTAGAGTAAACTAAATACAAAGCATGAATCCGTTACCGCTAGAAAAATATAGGACAATACATTGATATTAATACAAAGTGAACACAGATGCAGCGCTTGTCCTAGCCTATTGACACATGTGTCAAGCCTGGATGTCCCCTTCATGGACACAAGTGTCTCTCGGAAGTATAATAGGCCAAATGTTCTATTAACATAATCAAGCCCGATCAGTCTCAGACTAGGGGATTCAGCTTGTAAACGAAGAACACGATATATTGGGTAACCGATTAGGTATTTTCCAAAGTAAAATGTTTGTATTCTATTGTGGGG
>TU96049
GTGACTCCATACATTTGCTATTCTTCACGGACATCCGGGCGCCCACTTCCATAACAAAGCAAATCGAAAAGTGATAGCCTATATTTCAGCACCATAATGCAATATACAATGGACGAGTAGGGCTTTCCTCTCAGAACAAACATTATTTGTGCTCAGGACTGATTATAAATATCCGTCTATAATACGAAATTGTCTTTCAGATCTTGCACTTGGTCTCCACGAAAGACTTTCAGAAATACATTCCAAATGTATGTGTTTATGTCCAGTATGTAAGTAGATTGAAATGagatataggcctacatttatagGCTAAataagtgtatgtgtgtatgaaaTGAAGTAGTATTACAAATAAGCTTTATTTATAGAACACTTCGGTTAAGTCGGTGTACATATGGAATAATAATGAAGAGGCCTAGTTATTTATAATCAATGTAAAGCATAGACCGGTAAAACAAACCATAGGCATGGAGTATCGCTAATTATTTGATTATAAAGTCTATAAATCAAAATGCAATTATATAAACTTACCTAGAGAAAATAACCAATTATTATTTGTATTCTTCTTATTATTACATGTTCCATCATTATGAATAATCGTTTGTTGATTTTAAAGCATGATGGAAGCGCTGTGAAATGACCCGGTTAAGATGGATTCATGGAAGGAGATAGCACTTTTTCTCCTTTACggagtgtgtatatacagtatttgttCTATTgattgaatgtgtgtatttttgtgtagATGTTGCTCGTATTATCTATAGAACGATGTAAAAGGTAAATTacaaaaaaagtgtatttctGCCATAGAATAGGACATTTTACCATACAAAATGTGCATTTGCTGCCATCATGTTAACCACA

Function

GO:

id name namespace
GO:0021661 rhombomere 4 morphogenesis biological_process
GO:0042573 retinoic acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612649.2 False 4538 mRNA 0.43 7 77535519 77542730
XM_036986057.1 False 4398 mRNA 0.43 7 77535519 77542730
TU96049 True 867 lncRNA 0.41 1 77537009 77537875

Neighbor

gene id symbol gene type direction distance location
LOC110529949 LOC106577136 coding downstream 62 77526431 ~ 77535457 (-)
LOC110529928 LOC106577138 coding downstream 48332 77484619 ~ 77487187 (-)
rtkn2a rtkn2 coding downstream 74859 77453710 ~ 77460660 (-)
tmem26a LOC106577143 coding downstream 178738 77352007 ~ 77356781 (-)
LOC110529831 LOC106577144 coding downstream 221719 77148371 ~ 77313800 (-)
tbc1d12a LOC106577134 coding upstream 64189 77606919 ~ 77623628 (-)
LOC110529991 LOC106577131 coding upstream 153177 77695907 ~ 77735548 (-)
sh2d4ba LOC106577151 coding upstream 223214 77765944 ~ 77782971 (-)
LOC110529998 LOC106577125 coding upstream 381806 77924536 ~ 78308978 (-)
LOC110532724 LOC106577124 coding upstream 1093554 78636284 ~ 78959395 (-)
G87113 NA non-coding downstream 17862 77517445 ~ 77517657 (-)
G87111 NA non-coding downstream 21533 77513317 ~ 77513986 (-)
G87100 NA non-coding downstream 42150 77493136 ~ 77493369 (-)
G87093 aedo non-coding downstream 51593 77482511 ~ 77483926 (-)
G87085 NA non-coding downstream 62152 77471489 ~ 77473367 (-)
G87140 NA non-coding upstream 2450 77545180 ~ 77545382 (-)
G87141 NA non-coding upstream 2671 77545401 ~ 77545633 (-)
G87322 NA non-coding upstream 26599 77569329 ~ 77570010 (-)
G87363 LOC106577133 non-coding upstream 103191 77645921 ~ 77647885 (-)
G87365 NA non-coding upstream 107232 77649962 ~ 77650213 (-)
G87090 NA other downstream 55580 77478603 ~ 77479939 (-)
G86448 NA other downstream 667921 76866904 ~ 76867598 (-)
G86132 LOC106577062 other downstream 927165 76606682 ~ 76608354 (-)
G86063 NA other downstream 1012038 76516251 ~ 76523481 (-)
ccser2a ccser2 other downstream 1135563 76324531 ~ 76399997 (-)
G89418 NA other upstream 1507081 79049811 ~ 79050491 (-)
G90081 NA other upstream 1992028 79534758 ~ 79535572 (-)
LOC110530200 NA other upstream 2340807 79862081 ~ 79917875 (-)
G90190 NA other upstream 2343945 79886675 ~ 79888180 (-)
G90382 NA other upstream 2598829 80141559 ~ 80142157 (-)

Expression


Co-expression Network