tbc1d12a (LOC106577134)


Basic Information

Item Value
gene id tbc1d12a
gene name LOC106577134
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77606919 ~ 77623628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612662.2
GTAATGAACACTTCAAAATGGCTACTGGTTGTGGTATTAGTGCTGCTGACTGGTACATAGGGATTGCATTAATCTGTTACAGCACAGGCCCGATTGAAATGTTATTTTGACCAAACGTTCATCAAAACAGTATGCTGTTTTTGTGGGTCTGCCAGATTAAAAACGACAGACTACAAAACATGGTCACGCTCTCAAAGAACAACGAAGACTGGGAGCTCAGACGTCCGAGAGGGCGACGCTGCAGGATTTTATGTCCGAAGCTATAACCAGCTTCGCGGAGGGTACATGAAATGGAAACAGCAGAACATGGAGATGTGGTTCTTGTTTTGCCCGTCGATGTCAACGAAAATGAAGAGGCAGGTAAATCTTACGGTTCACATGCCGACTGTAATATAATAGCAACCTCTCGCCCATTGATCGACAACGGAAGCCGAGTATGCGCGGCGGATGAGGGTCAAACGGGGAAAGGTTATGTTTATATAGCCAGCAATGGGAAGAGTCCAATCGTTGAATGTGTCGTGTTACCATCGCAGAACGTCCGAGTTGGGAATACAATAATGCGGGATTTGGTTGCAGACTGTCTCCCCATTCAGATGCATGAAAGCGGTGTAATTTCAAACCTGTGCAACGACCCACCGCACCCGAACGACCACAGATTTAATGGATTTACTGAGTCATCGGTTCAGCTGATGGTCGGGTCGGAAGCTGACGGAGGGGGGAACGGGGGGCCCTTTTCCTGCTCAGACACAGCCGCAAGCGCCTACAGACACGAGGAGGGGAACGGAATGTTACTGCAGCTGGCTCGTGTTTCACAGCGGGGAAAACTGGATTATGAGGGGGAGACTCAAGATTCCAACTCGGGTACACTGAACGAGGGGGATTCTAATATGGAGCCAGGGCCACAgccgccatctctctctccattgtcatGTAGGCCTATAGACAACCCTCAACAGAATTACACTTTCACGGACTCTGTTGATTTGGACATGAAAATGGCCAATGGGGATATGGATTGTTATTTATCAAATGATGATTGGTCTACAGATGTGGATACTGATTATTGTAGCCAGATGGACACATGCAACCGACTGCTATGCCAAGGACTTGACTGCTCTGTCATGGAAGTAAATGTAGCAAATGGTGGCCTGCATACTGTAAACACTGAAGCCACATGTGATTTGGATGCTGTTTCCTCAGAAAGAACCACAAATGTTCCATTTGATGTCGTCGTGGTGCATGCTTCTAATCTGCAGCTCCAAAACATCCAGTCATCACCTGCATTATGTGAGAGAAACAGCACGGGGTTGAGGCATAGCAGCCCAGAGGGAGCTCCCCCAGCAGCTGCCAAGCCCCCCGATGCAGCGAGTAGTGTTCCGGACTCTGAGGGTGTCCCTTCAGAATCAAGTGCCAAACtcccgtctccctctccgtcaACACTTTCTGAAAACACCAACAGTCCAAACACAGAACCCAGCATGAGAGAGGATTTGAGTGAGTGCAGTCTCCCAGCTAGGCCTCTCAGCCTCAGGACTAACCCaaacatcacagtctctctcAGCTGTGATGCCACCCCTCTCAGCCCGGAGGATGGGGACATGTTATTTGGAGATGAGGGGGGTGCGGACTGCTCTAGAAACACTTATGATGTCGGTCGTCGTCAAAGTGCCCCAGAGAAACTCCCCGACGGGTCGACAGTTCTGTCCTCTTCTAAGAAGTTTGGAATCTCAGATTTTTTCACCAGaaaCCTGTTTTCTAGGAAGCCCAAAGAGCCAAAGCCACCTTCTCAGAATGCTCCTGGGTGGAGGTTGTTTGGAAAGGTTCCCCTGAGGGAGAACACTACTAAAGATCCTAAAGACTCCTTCACCATCCAGCAGGAGTACCCGGTGAAGGTTGGACCAGCTCCAGGTTCCCAGGTCCAGCTCTCTGCAGCGCGGCGGAAAAACCTGGAGTTTGAGCCGTTGTCTACCACAGCTCTGATACTAGAGGACAGGCCATCGAACCTTCCTGCCAAGTCTGTTGAGGAGGCCATGCGTCACAAACAAGAGTATGACGAGATGGTGGCAGGAGCCAAGAGGAGAGAGCTGAAGGAGGCCCAGAAGAAGAAGCGTCGGATGAAGGAGAGGTTTAAACAGGAGGACAGCATCGCCAACGCCATGGTCATCTGGAACaatgacgtcctgcccaactgGGACTGCATGCGTAACACGCGTCGGGTCAGAGAGCTCTGGTGGCAGGGCCTTCCTCCCAGCGTCCGAGGACGTGTCTGGAGCCTGGCCATCGGCAACGAGCTCAACATCACCCCCGAGTTGTTTGAGATATTTCTGTCTCGGGctaaggagaggtggaagagctTCAGTGAGACCAGCTCTGAAAACGAGACCGAAGACTCTGGATCATTGCAGGCGGATAGAGAGTCAAGTCTGGACCTGATAAAGCTGGACATCTCCAggaccttcccctctctctttatttttcaGAAGGGTGGGCCCTATCATGACCTCTTGCACAGTGTTCTGGGGGCGTACACGTGTTATAGACCAGACGTGGGCTATGTCCAGGGGATGTCCTTCATCGCTGCAGTGCTAATCCTGAATCTGGAGGAAGCTGACGCCTTCATCGCTTTTGCGAACCTGCTCAACAAGCCCTGTCAGATGGCCTTCTTCAGAGTGGACCACGACCTGATGTTGAAATACTTCGCTGCTTTTGAGGTGTTCTTTGAAGAGAACCTCCCACGGCTGTTCAATCACTTTCAGATCAACAACCTCACCCCTGACCTTTATCTCATAGACTGGATCTTCACCCTGTACAGTAAGTCGTTGCCATTGGATGTGGCGTGTCGCGTGTGGGACGTGTTCTGTCGGGACGGGGAGGAGTGTCTGTTCCGGACAGGCCTGGGCATCCTGCGCCTCTACCAGGAGGTCCTACTGCAGATGGACTTCATCCATATGGCCCAGTTCCTTACCCGCCTGCCTGATGACATGGCTGCTGACAACCTGTTCAGCTGCATCACTGCCACACAGATGCTCAGCAGCAACCGCAAGTGGGGCCAGGTCTTCTCTGCATTGATGAAGGATGGCAGTAAGGAAATGGCCAACCACAGTCCGGCTCCAAGAAGCTAACGGTTTAGACACACGAACCCCACTACCCAATGTGTTTCTGAATCTGTGACACACGCACTTGGATTTCTTCTGGGGACTGTTGCTAAGGCAACAGGAATGCTTTGCTTGGTTATGAAATGGACACCAAATGGATGTAATACTGGGAGGTGGCAACACATCCCTACatatctccacacacacacacacacacaaaatggcaTCAGAAGTGTGACTGAAATGAATGTTGGTGCATCAGAGAAccattagcaactatgactgatgAAATCTGGTGGAAAATACTTTAGGCCGGGAGAGTTCTGTCATTATTGCGCATACGGCAAGTGGCTATAAGGAGTTCCCAAAACTCCTATCAACACTCCATTGGTTTGCGTACACTACGCCCATTAAGTATATGTCCATTTTCGTCCCTACATATCTctctacatgcacacacacactcacataataACAGCATTATAAACAGGCCTTAGGTGGACCATGAAACCACTGACTCACCCATATAGTCTGGTCAGAAATATGTTATACTTTCAGATTGTAAAGCTGTTAAATGTACTTGTCTCTTTTTGTTTTTAGGTTATACCAAATTTCTCCACGACTAAGTGTTTGTAAATATGAACTTAAACATATGTACCTATATTTGTATGTATTAATGTATggtatacacatacagtattttcCTCGTGTTCACTAATTCAACAGGACCCTTGGCAAACAGTGATTCTGGAATAGGAAATACCAACGGTAAATCAAGGAGCGACTTGGTGAAATCTTTTGAAAAACTATTGAATCTGAGTGCTCTTAAGTtagtttaaaggtccaatgcagccattttgatctcaatatcaaatcatttctgggtaacaatgaagtaccttactgtgattgttttcaattaaaatagtaaaaaaaaaatgatagctTCTtaacaaagagcaatttctcgAGGAAGAATTTTGATAGCAGtctctgggagtggtctgagtgagggGAAACGGAATagtagctgttattggcagaggggtTTGgcactctctttcttattggtgtaTTAACAAATTTACTAcctagtgatgtcaccaggcaggccaaaactccatcccaccaaaacaggttgacatttcaggccttcttttcaaacagctctaacactaaaagggcattatcgtAATTATCACAACCTCGTAGTGTGGAagcatatataaaacacaggcaaatcatgttttttttgctgcactgggccttttaaATAAAGCCctgaagaggaggggggataatTTTGaaataaaagtgcaatatgaATCTCAAGGGCCACATGATGCAGTGTTTTTGGAGAAACAGGTTTGAATAACCGCTTTATGTTGAGTTAAATCTACAGTTGGTGATGTCTGATAGTACAGTGCTTTGATTAGATATTTAGAAAGTAGTGGAGAAGGAGAACAACATTCTTGCAAGATGTTTGATTTATTTTAAGATTGACATTTGGTCTGTATGCATACTATTTAAGTTGTAGCATTGCTTCATGTAAAATAATCATTCCGCTTGTTTTTGTCCAATTTACAATTGTACAGTTTTCATATGccttactggtactgtatatgtaatgtaaaAAAGATCTCTTTCGTAAATGGCCACTAGTTAAATGTGTAAATAAATATCTGGGCAACAGAA

Function

NR:

description
TBC1 domain family member 12-like

GO: NA

KEGG:

id description
K24795 TBC1D12; TBC1 domain family member 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612662.2 True 4790 mRNA 0.47 13 77606919 77623628

Neighbor

gene id symbol gene type direction distance location
LOC110529957 LOC106577135 coding downstream 64189 77535519 ~ 77542730 (-)
LOC110529949 LOC106577136 coding downstream 71462 77526431 ~ 77535457 (-)
LOC110529928 LOC106577138 coding downstream 119732 77484619 ~ 77487187 (-)
rtkn2a rtkn2 coding downstream 146259 77453710 ~ 77460660 (-)
tmem26a LOC106577143 coding downstream 250138 77352007 ~ 77356781 (-)
LOC110529991 LOC106577131 coding upstream 72279 77695907 ~ 77735548 (-)
sh2d4ba LOC106577151 coding upstream 142316 77765944 ~ 77782971 (-)
LOC110529998 LOC106577125 coding upstream 300908 77924536 ~ 78308978 (-)
LOC110532724 LOC106577124 coding upstream 1012656 78636284 ~ 78959395 (-)
LOC110530032 ppp4r3b coding upstream 1457126 79080754 ~ 79092872 (-)
G87322 NA non-coding downstream 36909 77569329 ~ 77570010 (-)
G87141 NA non-coding downstream 61286 77545401 ~ 77545633 (-)
G87140 NA non-coding downstream 61537 77545180 ~ 77545382 (-)
G87113 NA non-coding downstream 89262 77517445 ~ 77517657 (-)
G87363 LOC106577133 non-coding upstream 22293 77645921 ~ 77647885 (-)
G87365 NA non-coding upstream 26334 77649962 ~ 77650213 (-)
G87389 NA non-coding upstream 61319 77684947 ~ 77685313 (-)
G87425 NA non-coding upstream 121799 77745427 ~ 77745798 (-)
G87376 NA non-coding upstream 137493 77761121 ~ 77763616 (-)
G87090 NA other downstream 126980 77478603 ~ 77479939 (-)
G86448 NA other downstream 739321 76866904 ~ 76867598 (-)
G86132 LOC106577062 other downstream 998565 76606682 ~ 76608354 (-)
G86063 NA other downstream 1083438 76516251 ~ 76523481 (-)
ccser2a ccser2 other downstream 1206963 76324531 ~ 76399997 (-)
G89418 NA other upstream 1426183 79049811 ~ 79050491 (-)
G90081 NA other upstream 1911130 79534758 ~ 79535572 (-)
LOC110530200 NA other upstream 2259909 79862081 ~ 79917875 (-)
G90190 NA other upstream 2263047 79886675 ~ 79888180 (-)
G90382 NA other upstream 2517931 80141559 ~ 80142157 (-)

Expression


Co-expression Network