LOC110529971 (LOC106577133)


Basic Information

Item Value
gene id LOC110529971
gene name LOC106577133
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77645939 ~ 77647927 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612674.2
TAGGCATGGGGTTGAGAGGGGTATTGTTACAGTAGGAGGGGGCCTGCTTAAGGGTGGTCTGGGCAGACCCATTTATGCCCTGAACACTCCCCTCTGTACCCCTCCCCATTCTCCTTTATCCTTCTATAACCCTTTTTTTACGCAAGCGTCCCGGGACCCCGCATTTTGAATAGCAGCAAACACTGGGTCTCCACATGGTATTTTGATTGTGGCGCGTCCGATTTTCGTTTCATTCGGGCGTGCTACTGATGCTTGGCTGCATTTGAATATAGAACCCTTCAAGTAGCAGTAATCACCCCGAGCCATGAGATTCCTGTGGCTTCTGTTCTTCCTCCTGTGCCTCCCTGTCCTGCCCAGCACTGAGGCCAAACGCCAGAACTCCGACAACAAGATGTCGcagcccccaccaccaccaccagcaggcAAAAAGCCCAAGAACTCTGTCCCCAGCTCAGGAGGGTTCAGCACAAAGGTTGGCCACAACTGTACCTGGGATACGTCCGGGGAGGGCGTAGTGAACTTGCTCGTCAGCTGTAGATCCGAGGAGCAGACCTACTGGTGCCGCTACACTGGACAGCCAGACCTGTGCCAAGCCTACAGTGACAGGAAAGCACAGGTCAGGCATTGGAAACAATTGGTGGGCAagctgaagaagaggaggagtgcGTGCGACGGTGAAAAGGTGCTGAAGACCCGCTCATGCAAGGCCCCCATGGAGTCGCACATGAAGCTCAAAGAGAAGGGGAAAGGCAGAGGCAAGAAGGATTCAGTGTCCCTGGTTCCGGAAATggtagagaaggaggagaagaaagaggataTGACTCCGTtgttagaggagagggatggggaggtgaACGACATGGAGCCAGTGGAGAATTATTGTGCCGAGGGATGGCATTCTGTCTGCTCATTCTTTGTAAGTTTTTTTGAAGGTTAAAGTCTTTGTATGGTTTTTGTAAGATAAAAAAGGGACAAAGCTGATGAACTCACCTCTGTATGCGGGCTTACTTCTTTGCTaggtaaacaaaaatgtttttgtaTAAAGTGATATAGAGCCTAAATGTAGGCTGCAGAGATTtatttgtgtttattttattGTGAAACTAATCTTATTTTCTACAGACAATATTTGCTACTGTTCATTTGTAGTCACTAGACTTGTATCAGATTTATATTTTTTAACTTTAACACAGCATACAAAATTCTACCTGTGAATAAACATACCGTACCATATAACCATTTAACAGTTGTTCGACTCATTTAATACATCAACACAGATGA
>XM_021612684.2
CATTCTCCTTTATCCTTCTATAACCCTTTTTTTACGCAAGCGTCCCGGGACCCCGCATTTTGAATAGCAGCAAACACTGGGTCTCCACATGGCAGGTGGACTGTATGCTTGCTGTGCATGCATATTTTTTTCATGTTACTTGTATTTTGATTGTGGCGCGTCCGATTTTCGTTTCATTCGGGCGTGCTACTGATGCTTGGCTGCATTTGAATATAGAACCCTTCAAGTAGCAGTAATCACCCCGAGCCATGAGATTCCTGTGGCTTCTGTTCTTCCTCCTGTGCCTCCCTGTCCTGCCCAGCACTGAGGCCAAACGCCAGAACTCCGACAACAAGATGTCGcagcccccaccaccaccaccagcaggcAAAAAGCCCAAGAACTCTGTCCCCAGCTCAGGAGGGTTCAGCACAAAGGTTGGCCACAACTGTACCTGGGATACGTCCGGGGAGGGCGTAGTGAACTTGCTCGTCAGCTGTAGATCCGAGGAGCAGACCTACTGGTGCCGCTACACTGGACAGCCAGACCTGTGCCAAGCCTACAGTGACAGGAAAGCACAGGTCAGGCATTGGAAACAATTGGTGGGCAagctgaagaagaggaggagtgcGTGCGACGGTGAAAAGGTGCTGAAGACCCGCTCATGCAAGGCCCCCATGGAGTCGCACATGAAGCTCAAAGAGAAGGGGAAAGGCAGAGGCAAGAAGGATTCAGTGTCCCTGGTTCCGGAAATggtagagaaggaggagaagaaagaggataTGACTCCGTtgttagaggagagggatggggaggtgaACGACATGGAGCCAGTGGAGAATTATTGTGCCGAGGGATGGCATTCTGTCTGCTCATTCTTTGTAAGTTTTTTTGAAGGTTAAAGTCTTTGTATGGTTTTTGTAAGATAAAAAAGGGACAAAGCTGATGAACTCACCTCTGTATGCGGGCTTACTTCTTTGCTaggtaaacaaaaatgtttttgtaTAAAGTGATATAGAGCCTAAATGTAGGCTGCAGAGATTtatttgtgtttattttattGTGAAACTAATCTTATTTTCTACAGACAATATTTGCTACTGTTCATTTGTAGTCACTAGACTTGTATCAGATTTATATTTTTTAACTTTAACACAGCATACAAAATTCTACCTGTGAATAAACATACCGTACCATATAACCATTTAACAGTTGTTCGACTCATTTAATACATCAACACAGATGA
>XM_021612694.2
TGTTACTTGTAAGTAAAAAAATTCTGAGCCGACTTGGGGGTGTTTGTTTTGGTGCATGTCTTTGTTTTGTAGCAGTatattggatcactccaatatgGTTTCCTTCGCACGGCAGGATACACTCAAAGTATTTTGATTGTGGCGCGTCCGATTTTCGTTTCATTCGGGCGTGCTACTGATGCTTGGCTGCATTTGAATATAGAACCCTTCAAGTAGCAGTAATCACCCCGAGCCATGAGATTCCTGTGGCTTCTGTTCTTCCTCCTGTGCCTCCCTGTCCTGCCCAGCACTGAGGCCAAACGCCAGAACTCCGACAACAAGATGTCGcagcccccaccaccaccaccagcaggcAAAAAGCCCAAGAACTCTGTCCCCAGCTCAGGAGGGTTCAGCACAAAGGTTGGCCACAACTGTACCTGGGATACGTCCGGGGAGGGCGTAGTGAACTTGCTCGTCAGCTGTAGATCCGAGGAGCAGACCTACTGGTGCCGCTACACTGGACAGCCAGACCTGTGCCAAGCCTACAGTGACAGGAAAGCACAGGTCAGGCATTGGAAACAATTGGTGGGCAagctgaagaagaggaggagtgcGTGCGACGGTGAAAAGGTGCTGAAGACCCGCTCATGCAAGGCCCCCATGGAGTCGCACATGAAGCTCAAAGAGAAGGGGAAAGGCAGAGGCAAGAAGGATTCAGTGTCCCTGGTTCCGGAAATggtagagaaggaggagaagaaagaggataTGACTCCGTtgttagaggagagggatggggaggtgaACGACATGGAGCCAGTGGAGAATTATTGTGCCGAGGGATGGCATTCTGTCTGCTCATTCTTTGTAAGTTTTTTTGAAGGTTAAAGTCTTTGTATGGTTTTTGTAAGATAAAAAAGGGACAAAGCTGATGAACTCACCTCTGTATGCGGGCTTACTTCTTTGCTaggtaaacaaaaatgtttttgtaTAAAGTGATATAGAGCCTAAATGTAGGCTGCAGAGATTtatttgtgtttattttattGTGAAACTAATCTTATTTTCTACAGACAATATTTGCTACTGTTCATTTGTAGTCACTAGACTTGTATCAGATTTATATTTTTTAACTTTAACACAGCATACAAAATTCTACCTGTGAATAAACATACCGTACCATATAACCATTTAACAGTTGTTCGACTCATTTAATACATCAACACAGATGA

Function

NR:

description
fibroblast growth factor-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612674.2 False 1281 mRNA 0.47 2 77645939 77647927
XM_021612684.2 False 1225 mRNA 0.46 3 77646045 77647927
XM_021612694.2 True 1211 mRNA 0.45 2 77646255 77647927

Neighbor

gene id symbol gene type direction distance location
LOC110522259 LOC106577152 coding upstream 8583 77636259 ~ 77637356 (+)
LOC110532710 NA coding upstream 133586 77509558 ~ 77512353 (+)
LOC110529943 LOC106577137 coding upstream 143649 77494045 ~ 77502290 (+)
LOC110529936 aedo coding upstream 161889 77482484 ~ 77484050 (+)
LOC110529921 LOC106577139 coding upstream 177018 77460880 ~ 77468921 (+)
LOC110529985 LOC106577132 coding downstream 14355 77662282 ~ 77664950 (+)
LOC110529992 LOC106577130 coding downstream 104658 77752585 ~ 77763628 (+)
LOC118964491 NA coding downstream 782268 78430195 ~ 78431114 (+)
LOC118964520 NA coding downstream 878765 78526692 ~ 78529763 (+)
LOC110530007 LOC106577126 coding downstream 893666 78541593 ~ 78625355 (+)
G87198 NA non-coding upstream 8114 77637575 ~ 77637825 (+)
G87156 NA non-coding upstream 80474 77565115 ~ 77565465 (+)
G87128 LOC106577135 non-coding upstream 106193 77539306 ~ 77539746 (+)
G87127 LOC106577135 non-coding upstream 107516 77537397 ~ 77538423 (+)
G87000 NA non-coding upstream 130168 77515523 ~ 77515771 (+)
G87208 NA non-coding downstream 2381 77650308 ~ 77650542 (+)
G87152 NA non-coding downstream 6210 77654137 ~ 77654415 (+)
G87220 NA non-coding downstream 23020 77670947 ~ 77671214 (+)
G87221 NA non-coding downstream 24434 77672361 ~ 77672641 (+)
G87223 LOC100380853 non-coding downstream 27291 77675218 ~ 77675805 (+)
G87159 NA other upstream 75469 77570015 ~ 77570470 (+)
G86614 NA other upstream 521512 77123935 ~ 77124427 (+)
G86019 NA other upstream 1010003 76631745 ~ 76635936 (+)
LOC110529610 NA other upstream 1186116 76457821 ~ 76459823 (+)
G83979 NA other upstream 2500427 75144864 ~ 75145512 (+)
G89667 NA other downstream 1901090 79549017 ~ 79549651 (+)
acoxl acoxl other downstream 2103846 79720751 ~ 79765359 (+)
G91064 NA other downstream 3117187 80765114 ~ 80766155 (+)
G91541 LOC106591086 other downstream 3890404 81538331 ~ 81541400 (+)
G91779 NA other downstream 4229612 81877539 ~ 81879178 (+)

Expression


Co-expression Network