LOC110529985 (LOC106577132)


Basic Information

Item Value
gene id LOC110529985
gene name LOC106577132
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77662282 ~ 77664950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612705.2
TGGCTCTCATGCATTGGGAGACTGAACTTCAGAGAGAGCAAGGGGGACATGCCTGCTCAACACTACTGACTGCAAGTTATGAATTCATGACAAGATACTTGAACAAAACTAGTTATTACAGTACATTTTAAAGCATATCTTGTTCAATCATCTTTGTCTTGGAACCTCTCTCTTCATTTTTCAAATGAGTGCCACGAGGTACCTCCACGTATTAAATTCATCAGCAATGCCGGTTCCTGTTATGCCTGTAGACATCGCTATGCGCATGTACATCACACACTCGCCACCTCTCCGTAGCTTCCTCAGTTCCCATGAGGACTTGAGGGCCAGGAACCGGGCAAACCACTACAAGCCCCTACAGCCCTGCATCAGCTCCCAGAGGCCCCTGGAGGGCCCCAGTCTGGTCTGGAAGAGCCCCAAGACAACCATGAAGACCTCAAAGGGCAAGAAGAGAGTGGTCTTCGCCGACTCCAAAGGCATGTCCCTCACAGCCATCCACGTCTTTTCAAAGTTTGATGAGGAGCCTGCGCTGTCCAACTTTCAATTTGACCTCATAGACCTGGAGAATGCCACCATGGAGCTGAAGATCAGCACCAAGCGAAGCCTGGCGCTGGACTTTCCCCAACCCGCTGCAGACTATCTGGCCTTCCGGAACCGGCTGTTGAAGAATTCTGTGTGCCTGGAAAACTGCACACTGCAGGATAAGTCACTCACGGGCACCGTGAAAGTCCGAAACCTTGGCTTTGAGAAATCTGTCCATGTCCGGGTAACTGTTGACTCATGGAAAACCTACACAGACATTGACTGCACCTTTATGAACAACGTCTACAGTTGCCAGGACACAGACACATTCGCCTTTGTCTTCAAACTGCCCCGTTACGTACCTCCTTACAACAGAGTCGAATTCTGCATATGCTTCAAAAGCAAAGACCAGGTTTTCTGGGACAATAATGACGGGAAAAACTACATTCTCAAACCAATTGGGTGGAATGGAGACGATGTGAAAACAATGCCCAAAACTCCTGTTGAGCGTAAGAAACCAGAAGAGCACAAGAACAGTAAACTACTGGAGATGGGGTTTGACCAGTTTGGAAGTCCCCGCTCATCAAGTCCCCTGGTCTTTCCTGGGTTGCAAAGCTGGGGCCGAATTGAGAATGGTGCCAACTACTGGTGAAGTTAGGGAAGACTTTCAGCTACAGTGAAGAGTTATAACAGGGATACACTTGGAGCTGAGGGATAGCAGTACTAGTGACATAACTTATCTTAAAATGTCAAAAGCTGCTTTGAATGCAATGAAGCACATCAAGAAATAAAAAGTGTATGGAAATATGGACCATGGCTAGTTTCTACTGCTATTTGGTTACCATAGAGATACTTTCTTAATATGATCAGAAAGATGGAGGcaattgattttattttttattttacatgtGATTATTGTGTAAAGTACGTTAGTGCCTTCTCAATATCCTTCTTGTTATAAAACAAATACCCATTGAAATTTAAGTTTGACAATCTGTAACCTGGTATTAGCCCATTTTCAGGGTTGGAATTTATCGTAAGCAAATGCACTGATTGAGATGAACTTCCTGATttccatacatacagtatgtggtggGATCGGACCAATGGGATGTCCTTCATATTGAAGGGTAAGAGTGGTATCATCCATCtgtgaaaaaataaaatacaaatgtataTGAATTTTTCAGTAAATAAGGCAAATTATAAAATGCACCTTCAACATCCTTTGTACCttcaaaatatttgtttttaatgAAGACTCGTGTCATTTGATTTCTCAACATTgctgtctcatgtttctcttttcAAATGCTTATTATTGTATTTGATGCAATGTGAAGTTGTATTGATCAGATACAATCAGGAAATGTAATTATCACGGCCTGTTGTCTCATACAGGAGTTAATGCTGGTATGCTTTTCTTTCTCAATAAGTTCCATGATAATGTTAAGTCAGTATTACAGAACTGTGCCTTGTGGTGGACTTATTCTATGTTTAACTGGGCTCTATGAATGGTGATTGTTCTTGTTTCTATAAGTGTAATTCTGGTGTGAGTGTTGAGCAGTGGTGTGGCTGAAGTATGTATCTACACTATTTTATATTATTACTGTGAAAAAAGGTTGGTTATTGTGCTCTTGAATGTGTGCTTAAAGTGTATGTGATCCTTCTAGAAATAAAAGGTTATATTGTACAAAACA

Function

NR:

description
protein phosphatase 1 regulatory subunit 3C-B-like

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612705.2 True 2222 mRNA 0.42 3 77662282 77664950

Neighbor

gene id symbol gene type direction distance location
LOC110529971 LOC106577133 coding upstream 14355 77645939 ~ 77647927 (+)
LOC110522259 LOC106577152 coding upstream 24926 77636259 ~ 77637356 (+)
LOC110532710 NA coding upstream 149929 77509558 ~ 77512353 (+)
LOC110529943 LOC106577137 coding upstream 159992 77494045 ~ 77502290 (+)
LOC110529936 aedo coding upstream 178232 77482484 ~ 77484050 (+)
LOC110529992 LOC106577130 coding downstream 87635 77752585 ~ 77763628 (+)
LOC118964491 NA coding downstream 765245 78430195 ~ 78431114 (+)
LOC118964520 NA coding downstream 861742 78526692 ~ 78529763 (+)
LOC110530007 LOC106577126 coding downstream 876643 78541593 ~ 78625355 (+)
LOC110530018 LOC106577123 coding downstream 1330482 78995432 ~ 79054597 (+)
G87152 NA non-coding upstream 7867 77654137 ~ 77654415 (+)
G87208 NA non-coding upstream 11740 77650308 ~ 77650542 (+)
G87198 NA non-coding upstream 24457 77637575 ~ 77637825 (+)
G87156 NA non-coding upstream 96817 77565115 ~ 77565465 (+)
G87128 LOC106577135 non-coding upstream 122536 77539306 ~ 77539746 (+)
G87220 NA non-coding downstream 5997 77670947 ~ 77671214 (+)
G87221 NA non-coding downstream 7411 77672361 ~ 77672641 (+)
G87223 LOC100380853 non-coding downstream 10268 77675218 ~ 77675805 (+)
G87224 NA non-coding downstream 11801 77676751 ~ 77677182 (+)
G87227 NA non-coding downstream 13954 77678904 ~ 77679291 (+)
G87159 NA other upstream 91812 77570015 ~ 77570470 (+)
G86614 NA other upstream 537855 77123935 ~ 77124427 (+)
G86019 NA other upstream 1026346 76631745 ~ 76635936 (+)
LOC110529610 NA other upstream 1202459 76457821 ~ 76459823 (+)
G83979 NA other upstream 2516770 75144864 ~ 75145512 (+)
G89667 NA other downstream 1884067 79549017 ~ 79549651 (+)
acoxl acoxl other downstream 2086823 79720751 ~ 79765359 (+)
G91064 NA other downstream 3100164 80765114 ~ 80766155 (+)
G91541 LOC106591086 other downstream 3873381 81538331 ~ 81541400 (+)
G91779 NA other downstream 4212589 81877539 ~ 81879178 (+)

Expression


Co-expression Network