LOC110529991 (LOC106577131)


Basic Information

Item Value
gene id LOC110529991
gene name LOC106577131
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77695907 ~ 77735548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612720.2
AGCTCGTTTCCATGCACCGCCTTCTAACAACATGGCGCCAGTTTACAGCGGTGCTGCCTTCCAAAGGGATGCCAAAAACCGCGCCGTAAGAGGAACATATGATTATTGAAAGTAACAGTTAACTACAAAAAGGATAACGGTACCGTAGTTCTTATAAATAATACTTGTGTTCTTGTCATCTAAAATTCTGGAATTTGCGTGCAGCAACAGTTTGTTAGTGACAGGTTGCGCATGAGCCCACCTGCCGGAGAAACTGTGACGACGGTGGACCATTATGAATCTCCTGAACCTGACAATATAGTGGGCGATATCCTTTAATAGAGACCTGCAATATTATGCATATTCTTCGACAGCGAAGTAACGCGTAAACGTCTCCGTAGACTCATTGTAGTGCAATAAATAACTTTCTATTTTAAAAAAGAAGAAGCTCACTCTGTAATGAATGAAGAGAATTGTGCGCAATCGGAGGTGGAAAGGGAAAAGCTCCCTCCAATATGCCATACGTCACCAACTATGGATTTGGGGCGTGGTGCGAAACAGCCCTTTCCCTCCCTCAGCACGTTCATCTCCTCCCTTAACCAGCGGAGGGAGACGGGAGGCCGGTTCAGCGTGGGCACAAACCAGTGTCTACCAGGTGGACGACATGGGAGGGAGCTACCTCCTATTTGCAGTGATGTGAGGCAGAAACAGAGGATCTCCATCGACACACTTCCCCCCGAGGTGAAGGCCCCGTTCCCCTCTGAACCTGTCATCCCCCTCCGCACTAAGACCATCAAAGAGTTCCAGGAAGACATGGAGCGAGCCACAACCTCAGGGGACTGGAGGGATGTGAGGGATTTCTACCTAACCACCTTTGACTCCTTTCTAGAGATCAATGCTGCCTTCAAGAGAGAAGCTAACGCCCCATTTAACACAATCGAGGATTCTGGAGTCAACTCAAAATTTTTGAATGCAGTTTATGATGCTTTACTCTGCACACCCCAAGACATCCAGAAATCAGTGTTGAAGGGAATCATTAACAGCCTATTAAGAGAGTGGAAAGGTCCCAGAACGAAAGATGACCTGAGGGCATACTTCATCTTAGTTCAGAACCCTCAGTATTCCAGCACCAGTACCTATGTGATCTATGCCCACCTACTGAGACAGATAGCTGGCCTGTCCGAGGCTGACCACCATTTCCTAGTGCACTGGTTTAAAAAACTGTCTCCAAGGCGTTTCAGGCAGCTGGTGGAGCGTTTTCTTCACTTCATCTCCACTCGTCTGTTACCTGCTCCTCCTGATGAACTGCCCCCTCTGACCAGGTGTTCCTGGTGGATCCCTGCTGCCACCAAGGTCCTCGCCCTCTTCAATGCAGCTAACAGCATATCCACGCCTCCTATCATGTCCTTCACGGACTTCTACAACATCACCTTGGaccacatcgacatcatggagcagtACCGCACCTGGCAGAGCCACGGCAACTCCAACAAGTTCTCTTTCTGCCAGTTCCCATTTATCCTGTCAACGGTGGTGAAGAAAGCCATCATCCAGAGAGACTCAGAACAGCAGATGATAAGCATGGCCAGAcaaaGCCTGGTGAACAAGGTCTCTCGCAGGCAGAGAGTGGACATGAACCTGTTGTTCCTCAACATCAAGGTACGACGGGCCCAGCTACTCAGTGACTCATTGGATGAGCTGAGCAGGAAGAGAGCAGACCTGAAGAAAAAGCTCAAGGTCACTTTCGTAGGAGAGGCGGGGCTCGACATGGGCGGCCTCACCAAGGAGTGGTTCCTGCTGCTGGTTCGACAGattttccacattgactatgGCATGTTCACCTACTTGAAGGATTCGCGATGTCATTGGTTCAGCAGCTGGAAATGTGACAACTACTCAGAGTTTCAATTGGTCGGGACTCTCATGGGTCTCGCTGTGTACAACAGCATTGCTCTGGATATCCACTTCCCTCCTTATTGTTACAAGAAGCTCTTGACTCCACCCATTGTGCCATGTGACCAGAATACTCCCATCGGCATGGCAACCGCCACCCTGGGCGACCTGCAGCAGGTCATGCCGGATTTGGCTCATGGGCTTGGAGAGCTGCTCTGCTATGAGGGCAATGTGGAAGAAGACTTCTATCTGACCTTCCAGGTTTTCCAAGAGGAGCTCGGGGTGGTCAGGTCCTATAACCTAAAACCTGGAGGTGACAAGATTCCAGTCAACAAACAGAACAGAAAGGAGTATGTTCAGCTGTATGCTGGTTTCCTGCTTAATAAGTCAATTTACAAGCAGTTTGCAGCCTTCTATCGTGGCttccacagtgtgtgtgcgtcagACGCTCTGATGCTGCTGAGGCCAGAGGAGGTGGAGATGCTGGTGTGTGGGAGCCCAGAGCTGGACATGAGCACCCTACAGAGAGCAGCTCAGTACGAGGGCTACAGCAAAGCTGACCTCACAGTACGctgttTTTGGGACGTGGTGCTGGATTTCCCCTTGGAGTTGCAGAAGAAGCTGCTCCACTTCGCCACAGGAAGTGACCGTGTCCCCGTGGGAGGGTTGGCCGACCTCAACTTCAAGATTGCCAAGATCGACGTGTccactgactgGTTACCCATATCTCACACCTGCTTCAACCAGATCTGCCTCCCACCTTATAAAAGCAGGAAGGAACTGAAGCAGAAGTTAACCATCGCCATCTCAAACGCAGAGGGCTTTGGCTTAGAGTGACTCAGTCTGCAGCTATGAGATTCACAGTAAGATGAGAGTAGGTGATTCCTTTCCAAATGTACTTTAGAATTACATTCCTTCAAAAATAGAATTTGATATAGACTACAtgaccaaacgtatgtggactcctgctcattgaacatctcattccaaaaccatgggcattaatatggagttggtcctgcctttgctgctataacagcctctactcctctgggaaggc

Function

NR:

description
probable E3 ubiquitin-protein ligase HECTD2

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K12232 HECTD2; E3 ubiquitin-protein ligase HECTD2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612720.2 True 2932 mRNA 0.49 21 77695907 77735548

Neighbor

gene id symbol gene type direction distance location
tbc1d12a LOC106577134 coding downstream 72279 77606919 ~ 77623628 (-)
LOC110529957 LOC106577135 coding downstream 153177 77535519 ~ 77542730 (-)
LOC110529949 LOC106577136 coding downstream 160450 77526431 ~ 77535457 (-)
LOC110529928 LOC106577138 coding downstream 208720 77484619 ~ 77487187 (-)
rtkn2a rtkn2 coding downstream 235247 77453710 ~ 77460660 (-)
sh2d4ba LOC106577151 coding upstream 30396 77765944 ~ 77782971 (-)
LOC110529998 LOC106577125 coding upstream 188988 77924536 ~ 78308978 (-)
LOC110532724 LOC106577124 coding upstream 900736 78636284 ~ 78959395 (-)
LOC110530032 ppp4r3b coding upstream 1345206 79080754 ~ 79092872 (-)
LOC110530078 pnpt1 coding upstream 1357591 79093139 ~ 79109337 (-)
G87389 NA non-coding downstream 10594 77684947 ~ 77685313 (-)
G87365 NA non-coding downstream 45694 77649962 ~ 77650213 (-)
G87363 LOC106577133 non-coding downstream 48022 77645921 ~ 77647885 (-)
G87322 NA non-coding downstream 125897 77569329 ~ 77570010 (-)
G87141 NA non-coding downstream 150274 77545401 ~ 77545633 (-)
G87425 NA non-coding upstream 9879 77745427 ~ 77745798 (-)
G87376 NA non-coding upstream 25573 77761121 ~ 77763616 (-)
G87832 NA non-coding upstream 130528 77866076 ~ 77866309 (-)
G87841 NA non-coding upstream 144925 77880473 ~ 77880722 (-)
G87865 NA non-coding upstream 175389 77910937 ~ 77911147 (-)
G87090 NA other downstream 215968 77478603 ~ 77479939 (-)
G86448 NA other downstream 828309 76866904 ~ 76867598 (-)
G86132 LOC106577062 other downstream 1087553 76606682 ~ 76608354 (-)
G86063 NA other downstream 1172426 76516251 ~ 76523481 (-)
ccser2a ccser2 other downstream 1295951 76324531 ~ 76399997 (-)
G89418 NA other upstream 1314263 79049811 ~ 79050491 (-)
G90081 NA other upstream 1799210 79534758 ~ 79535572 (-)
LOC110530200 NA other upstream 2147989 79862081 ~ 79917875 (-)
G90190 NA other upstream 2151127 79886675 ~ 79888180 (-)
G90382 NA other upstream 2406011 80141559 ~ 80142157 (-)

Expression


Co-expression Network