LOC110529992 (LOC106577130)


Basic Information

Item Value
gene id LOC110529992
gene name LOC106577130
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77752585 ~ 77763628 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021612736.2
GTTACAAAAAGTCTTAGGAGACATTTTTTCGACACATCCAGTAAGGGGAGCAGGCCACACCCGGACAAATTGGGCGTGGCTTCCTGCCCTTTCGGGAAGTCGAGAATAAAGTCTCCAAAGAGTTTTTAAAACTCAGCCAAGCCAACAAAGCGGGGCAAAGATGCACTACTATCGTTATGAAAATGAAGAGGTCAGCTGCTGCTACAAGTACCTCATGTTTAGCTACAACATAATATTTTGGCTGGCTGGAGCAGCATTCATTGCCATTGGGTTCTGGGCCTGGAGTGAGAAGGGTGTGCTGTTGGACCTGACCCAGGTGACACGGCTGCATGGCTTTGACCCTGTGTGGCTGGTGCTGGCTGTGGGAGCGATCACTTTCATCCTGGGCTTTGCAGGATGTGTAGGTGCACTCAGGGAGAACATTTGCCTCCTCAAATTTTTCTCAGGGGTCATCGGGTTCATCTTCTTCCTGGAGCTGACGGCAGCCGTGCTGGCGTTCGTCTTTCAGGACAACGTCAGGGAGTGGATCAATGACTTCTTCCTGTCCAACGTCAAGGCCTACAGGGAGGACATCGACCTGCAGAACCTGATCGACTCCCTGCAAAAGatgAACCACTGCTGCGGAGCCAAGGAGCCTGATGACTGGAACCTGAATCTTTACTTCAACTGCACCGTCAACAACCCCAGCAGAGAGAGGTGTGGAGTGCCCTTCTCCTGCTGCCTCAGTGACCCTGCAgACACCGTTTTAAACACCCAGTGTGGATATGATGTCCGTAAAGGTCCAAAGGGGGTCTGGAGTAACGCCATTTACGTCAAGGGCTGCATCCCAGCCTTGGAGGAGTGGCTGCCTCGGAATATCTATATAATAGCTGGAGTATTCATCGTTATATCTGTACTCCAGATGATGGGCATCTTCTTTGCTCGGACACTGATCGGAGACATTGAGAAGGTCAAGTTTAACTACTACTGAGTGGTGTGGTGAAATGCATAGGCCTACAGAGGACAGTACTGGGACTATCCACCATACATTCCTCCCGATCTCTGATCTCTCTGAGGCATGGCAAGGGACAAGAATACGTCTATACCCGTGGCTTGTTATCTTTGGACTGTTCTGTCAGTCTCTGGAGATGGGATACCTCTGCAGAGCCTGCACAGTGGACATTAATCCGCCTTATTCAACTCAAGACTCTTATGTGCCTTCTCTCACAGGATTGCAGTCGTACTTAAAAATACAccctgggtttccctttgttttTGTAATTAGATACATTTTTGTATGGTTTGCCTCAGACACAGTGAATGTTTTCCTCGGCAACAGTCTTAACCAATAAACCCAGGTCGATTCCTGGGTCAATACATCATACCTCAATGATCCAAAAACAACAATTTAAGTCGCCGCACAGGTTTAAAAGGTGTGTTCTCTAGCCTTCAGCGTTTCATGAGTAGAATGGTAGCGTATCagactgggggaggaggagttTACCACGTCAGTGCAGCTGCAATGGCTCCGATATAAGACCTCGCCCTAGAGCTCAATCTGAAACAACAGGATTTCGGCACTGTTATGTGACAGGCTTTCAACTGGCACTACCATTGTCCCTTACCTCAGCTAAACATGAGAAATGCAGCTCtattttaaaggtagactcagtagATGCAGACAGTAAACTGCATGGTGGGTCAATTTCCACAAAGTGTGAGCCTCAACTtctctttttttacattttaaattctCTACCTACAATGCTGTAAGAGTGAAGCGAACCCGTGCAGATACTGTGTTGGGCGCAAAGTATTGCATCttgctcatctcaatatctgtggtgctgctcgTGGCAGTCATCTAGCGGAGTCTACCTTTTAAACCATTAGAATCAGTCTGCAGCCGGTCAAAACCAAAAGTGCACAGCTGAACCTCTGTCCTATTGTCCATCATGCCTTGTCTTTTCTAGCAGTCATGTGTCTCACAACTTGTCATACATACTTGTCATTCCACAATGTGTACTGCATCATGCCAACTAGTGTTGCGTATCGGTCATGTAGACACAACTTAAGGGAAACAACTGTTGACGCAATGTGTGTGTAGATGACATGCTTTATTTTGATCAGTCTTAGATGACCCCTAAGTGAAATATTAGTTGTTAGCTTGTTGACTCAAGAGTAGCTGAGTTGGATTATTTTACTGTTGTGTTGACTCCAGCCAAGGAAGCTTGGGCAAGTGCAGCAGTGGAGACACAGAGCCCGGTGTCTCTCACCCAGACCGACAGGGAGACATCCAGAGCAGCATGGGCCACTTGAACCACAGGTGAGATCTGATCATAGCGCTCACATCCCATCAACCTATAGCCGGGATCGTGCTGTGATCACATCACTAGACCTGGTTATCTGGCTGCATGGTGACAGTTTTGATTGAGAGATTGTATTCGCCTGTAATGTTTTGAATAATATTTTACTGTCTTATCTTGATGATGATCTGTTTTTCTAAACACATTCACAAACGCAAACCCAGTCGGCGCCTTTTTAATTTTAGCTTGAAAATGTGCTGAGCTGTTCCACTCTGCTCTTGTTAGATATTAAATACAATGCTGTCTGATCGGGCTGCCCGGAGGCACTTTATGTAGAAAAGATACAATTACAACTGTGCGGGAGGTCTTGATGCCCAACTTGTCTCCTCTGCTCAGCCTTTACACCTCAACAAGACACCCAGCCCACATCCAAGTGACCTCTGGCCACAGAATGAGCAGACTTCCTGAAACATTACTCCAAGCCTTCTGAAAGCGTTTTCAGCGGCGGTGTTTGCTGCAAGCTAGATAACTGCCAGTGCCTACACACATTGAGCTTGCTTTACCTTCATCCTGTCCAATGATGCCCTGCTCATTCCCTCTCCATTGCTGTCCTCATACCAGAATGGAGTGCGTTACAGAGCCAtctatggcaggtagcctagcggttaagaacattgggccagtaatcgaaggGTCACTGGTTCGACTCCCCAAGCCagctaggtgaaaaatctgacgtgcccttgagcaaagcacttaaccctaattgctctgtgCAAGAGTGTCTGTCGATTGACAATGTAATTGTTGAATGAGGATATCTTTACAGCTGATGAATGCTATACTTGAGCTATATGTCATACATTACAAGATCAAATTAAAGGACTTTCATTCAGGCCTTCAACTCCCATTTACACATCTGATGGTCTAGGTCTTTTATGTAGTTTTACAATTTTGTGTGCTTGTGTTAGATTGCTTCCATGTGATCATGGGAGTGTTTTTAACAAAAGGGACTTTTTTTTCCCATATGTAGATGTTCTGTTTTACCAAATGACATTTTGTAAATGTGAATTTTCTTAATTCTGGATAGGTTTTTATAAGCAATAAAGTATGTTGTCCATTTTTGTTAAA
>XM_036986097.1
ATGTATTACGAATTGATTAAATGTAACGAGtttgatagctacagtagttataaaaaatatatatatcgtCACCGTTAGTTAGCTAAACAACGAAGTTAGCGTTAGCTGACTCCTAGTCAATGGCTAGCTAACTTAACGTTATCTAGCTAAATTAATTAACGTTAGCATCTAGCAAGGGAACATTAGAGACTTAGCGGCATAATTATTGAATGGCATATGTGTTTAACTTTCCAATGAATCACATTTATGTCCCGGGAAGCCACCATGGCTAGTAACGTTAGCTATCTTGCTAAGTTAGCTGTGTTTACATGTAGCTACCATGTTATCTAGCGATAGTTAGCCGCAGTATAAATTGTTTGTCTTGACCGACTAACGTGGTAGCCAGGGGCAAAGATGCACTACTATCGTTATGAAAATGAAGAGGTCAGCTGCTGCTACAAGTACCTCATGTTTAGCTACAACATAATATTTTGGCTGGCTGGAGCAGCATTCATTGCCATTGGGTTCTGGGCCTGGAGTGAGAAGGGTGTGCTGTTGGACCTGACCCAGGTGACACGGCTGCATGGCTTTGACCCTGTGTGGCTGGTGCTGGCTGTGGGAGCGATCACTTTCATCCTGGGCTTTGCAGGATGTGTAGGTGCACTCAGGGAGAACATTTGCCTCCTCAAATTTTTCTCAGGGGTCATCGGGTTCATCTTCTTCCTGGAGCTGACGGCAGCCGTGCTGGCGTTCGTCTTTCAGGACAACGTCAGGGAGTGGATCAATGACTTCTTCCTGTCCAACGTCAAGGCCTACAGGGAGGACATCGACCTGCAGAACCTGATCGACTCCCTGCAAAAGatgAACCACTGCTGCGGAGCCAAGGAGCCTGATGACTGGAACCTGAATCTTTACTTCAACTGCACCGTCAACAACCCCAGCAGAGAGAGGTGTGGAGTGCCCTTCTCCTGCTGCCTCAGTGACCCTGCAgACACCGTTTTAAACACCCAGTGTGGATATGATGTCCGTAAAGGTCCAAAGGGGGTCTGGAGTAACGCCATTTACGTCAAGGGCTGCATCCCAGCCTTGGAGGAGTGGCTGCCTCGGAATATCTATATAATAGCTGGAGTATTCATCGTTATATCTGTACTCCAGATGATGGGCATCTTCTTTGCTCGGACACTGATCGGAGACATTGAGAAGGTCAAGTTTAACTACTACTGAGTGGTGTGGTGAAATGCATAGGCCTACAGAGGACAGTACTGGGACTATCCACCATACATTCCTCCCGATCTCTGATCTCTCTGAGGCATGGCAAGGGACAAGAATACGTCTATACCCGTGGCTTGTTATCTTTGGACTGTTCTGTCAGTCTCTGGAGATGGGATACCTCTGCAGAGCCTGCACAGTGGACATTAATCCGCCTTATTCAACTCAAGACTCTTATGTGCCTTCTCTCACAGGATTGCAGTCGTACTTAAAAATACAccctgggtttccctttgttttTGTAATTAGATACATTTTTGTATGGTTTGCCTCAGACACAGTGAATGTTTTCCTCGGCAACAGTCTTAACCAATAAACCCAGGTCGATTCCTGGGTCAATACATCATACCTCAATGATCCAAAAACAACAATTTAAGTCGCCGCACAGGTTTAAAAGGTGTGTTCTCTAGCCTTCAGCGTTTCATGAGTAGAATGGTAGCGTATCagactgggggaggaggagttTACCACGTCAGTGCAGCTGCAATGGCTCCGATATAAGACCTCGCCCTAGAGCTCAATCTGAAACAACAGGATTTCGGCACTGTTATGTGACAGGCTTTCAACTGGCACTACCATTGTCCCTTACCTCAGCTAAACATGAGAAATGCAGCTCtattttaaaggtagactcagtagATGCAGACAGTAAACTGCATGGTGGGTCAATTTCCACAAAGTGTGAGCCTCAACTtctctttttttacattttaaattctCTACCTACAATGCTGTAAGAGTGAAGCGAACCCGTGCAGATACTGTGTTGGGCGCAAAGTATTGCATCttgctcatctcaatatctgtggtgctgctcgTGGCAGTCATCTAGCGGAGTCTACCTTTTAAACCATTAGAATCAGTCTGCAGCCGGTCAAAACCAAAAGTGCACAGCTGAACCTCTGTCCTATTGTCCATCATGCCTTGTCTTTTCTAGCAGTCATGTGTCTCACAACTTGTCATACATACTTGTCATTCCACAATGTGTACTGCATCATGCCAACTAGTGTTGCGTATCGGTCATGTAGACACAACTTAAGGGAAACAACTGTTGACGCAATGTGTGTGTAGATGACATGCTTTATTTTGATCAGTCTTAGATGACCCCTAAGTGAAATATTAGTTGTTAGCTTGTTGACTCAAGAGTAGCTGAGTTGGATTATTTTACTGTTGTGTTGACTCCAGCCAAGGAAGCTTGGGCAAGTGCAGCAGTGGAGACACAGAGCCCGGTGTCTCTCACCCAGACCGACAGGGAGACATCCAGAGCAGCATGGGCCACTTGAACCACAGGTGAGATCTGATCATAGCGCTCACATCCCATCAACCTATAGCCGGGATCGTGCTGTGATCACATCACTAGACCTGGTTATCTGGCTGCATGGTGACAGTTTTGATTGAGAGATTGTATTCGCCTGTAATGTTTTGAATAATATTTTACTGTCTTATCTTGATGATGATCTGTTTTTCTAAACACATTCACAAACGCAAACCCAGTCGGCGCCTTTTTAATTTTAGCTTGAAAATGTGCTGAGCTGTTCCACTCTGCTCTTGTTAGATATTAAATACAATGCTGTCTGATCGGGCTGCCCGGAGGCACTTTATGTAGAAAAGATACAATTACAACTGTGCGGGAGGTCTTGATGCCCAACTTGTCTCCTCTGCTCAGCCTTTACACCTCAACAAGACACCCAGCCCACATCCAAGTGACCTCTGGCCACAGAATGAGCAGACTTCCTGAAACATTACTCCAAGCCTTCTGAAAGCGTTTTCAGCGGCGGTGTTTGCTGCAAGCTAGATAACTGCCAGTGCCTACACACATTGAGCTTGCTTTACCTTCATCCTGTCCAATGATGCCCTGCTCATTCCCTCTCCATTGCTGTCCTCATACCAGAATGGAGTGCGTTACAGAGCCAtctatggcaggtagcctagcggttaagaacattgggccagtaatcgaaggGTCACTGGTTCGACTCCCCAAGCCagctaggtgaaaaatctgacgtgcccttgagcaaagcacttaaccctaattgctctgtgCAAGAGTGTCTGTCGATTGACAATGTAATTGTTGAATGAGGATATCTTTACAGCTGATGAATGCTATACTTGAGCTATATGTCATACATTACAAGATCAAATTAAAGGACTTTCATTCAGGCCTTCAACTCCCATTTACACATCTGATGGTCTAGGTCTTTTATGTAGTTTTACAATTTTGTGTGCTTGTGTTAGATTGCTTCCATGTGATCATGGGAGTGTTTTTAACAAAAGGGACTTTTTTTTCCCATATGTAGATGTTCTGTTTTACCAAATGACATTTTGTAAATGTGAATTTTCTTAATTCTGGATAGGTTTTTATAAGCAATAAAGTATGTTGTCCATTTTTGTTAAA

Function

NR:

description
tetraspanin-14-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17296 TSPAN14; tetraspanin-14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021612736.2 False 3416 mRNA 0.46 9 77752585 77763628
XM_036986097.1 True 3649 mRNA 0.45 9 77752766 77763628

Neighbor

gene id symbol gene type direction distance location
LOC110529985 LOC106577132 coding upstream 87635 77662282 ~ 77664950 (+)
LOC110529971 LOC106577133 coding upstream 104658 77645939 ~ 77647927 (+)
LOC110522259 LOC106577152 coding upstream 115229 77636259 ~ 77637356 (+)
LOC110532710 NA coding upstream 240232 77509558 ~ 77512353 (+)
LOC110529943 LOC106577137 coding upstream 250295 77494045 ~ 77502290 (+)
LOC118964491 NA coding downstream 666567 78430195 ~ 78431114 (+)
LOC118964520 NA coding downstream 763064 78526692 ~ 78529763 (+)
LOC110530007 LOC106577126 coding downstream 777965 78541593 ~ 78625355 (+)
LOC110530018 LOC106577123 coding downstream 1231804 78995432 ~ 79054597 (+)
LOC110530025 rl19 coding downstream 1280958 79044586 ~ 79045036 (+)
G87227 NA non-coding upstream 73294 77678904 ~ 77679291 (+)
G87224 NA non-coding upstream 75403 77676751 ~ 77677182 (+)
G87223 LOC100380853 non-coding upstream 76780 77675218 ~ 77675805 (+)
G87221 NA non-coding upstream 79944 77672361 ~ 77672641 (+)
G87220 NA non-coding upstream 81371 77670947 ~ 77671214 (+)
G87470 NA non-coding downstream 64356 77827984 ~ 77828269 (+)
G87481 NA non-coding downstream 75090 77838718 ~ 77838942 (+)
G87483 NA non-coding downstream 77710 77841338 ~ 77841603 (+)
G87484 NA non-coding downstream 79070 77842698 ~ 77843021 (+)
G87497 NA non-coding downstream 98551 77862179 ~ 77862708 (+)
G87159 NA other upstream 182115 77570015 ~ 77570470 (+)
G86614 NA other upstream 628158 77123935 ~ 77124427 (+)
G86019 NA other upstream 1116649 76631745 ~ 76635936 (+)
LOC110529610 NA other upstream 1292762 76457821 ~ 76459823 (+)
G83979 NA other upstream 2607073 75144864 ~ 75145512 (+)
G89667 NA other downstream 1785389 79549017 ~ 79549651 (+)
acoxl acoxl other downstream 1988145 79720751 ~ 79765359 (+)
G91064 NA other downstream 3001486 80765114 ~ 80766155 (+)
G91541 LOC106591086 other downstream 3774703 81538331 ~ 81541400 (+)
G91779 NA other downstream 4113911 81877539 ~ 81879178 (+)

Expression


Co-expression Network