sh2d4ba (LOC106577151)


Basic Information

Item Value
gene id sh2d4ba
gene name LOC106577151
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 77765944 ~ 77782971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989897.1
GATGGCACCTGCGTTTTGTTCTGATGCTGGATCCAGTATGATGGTGAGAGAACAGGGAAAAGGAACAAGGATCTGAACTCTACAGCCCAGTAGAGTCTCTGAGGACTGTATGAACACATAGATGGAGGGAATGACACTTGTCTTCAATATGAAGTGAACTGATAAAAGGGGTTCATGGCCCCCTAACACTCACCTAACCCCACCTTGGTTAACAGATCTCTTGGGTGTTTGGAAGCTTTGTGTTGCCAAGATGATGCAGCAGATTTTGAGGGACATGTACATCGATCCGGACCTGCTGGCGGAGCTCAACGAGGAGCAGAAGCATATCCTATTCTATAAGATCCGCCAGGAGCAGGTGAGGCGCTGGGATGAGAGGGAGAACCGAGAGAACCAGGAGAACCAGGACCAGGGAAAGAAGGGTGAGTCTGGGAGAAGTATCCAGTGGCTGCAGGGCTGCGATGGggatgtgtgggtgtgggtgatGGGCGACGCTCCTGGGGATAAGCCTTATGAGGACATCATCAAGGAGCTGATGGGGGAGAAAGCCAGACGGCAGGCTCAGCAGGAGGCCAAGGAGCTCTGGCGAACCAAAGAGGCTGAGATCGAGGAGAAGTTCCGGGATGCTATGGCGAAGGAGAAGGCCCGTTTTGTGGCAGGGAAGTGGAAAGAAGAAACAGAGGACAGGAAGGCTGCCAAGCAGGAAGAGGAACACATCCAGGAGTCTCTCAAGAaacgagaggaggaggagagacagcaaGGTGAGGAGGAGATAAAACgtgcagaggagaagagagcgagggagcTGTATATCTCCCTAGAgcaggaacagagaaggagtgaGAAGGATGACAAGGAATGGGAGGAGCAACTGCGGCGCTCTAAGATGGCTGACCAGGAGATGCAGAGAAAAGCAAGGCGGGCACGGGATGAGTACAAGCGCCAGTCCCTGCGGGCTATAGAGAAGGGCCGTGTGGCAGGGCTCAGTGGGCTGTTCCAGCAGGGCCCAGTGGTGGGGAACGAACCAACAGCAGCCCCCTTCAGGAGATACAGCAACGTGCTAgagtcctcctcctccaccacccaccGCCCCGGCCTCCAGCCTGCTACTCCTCCACTGTACCGCCGTAGACAGAGCCAAAGGCACAGCACCATTGTTACACAGCCACTGATGGACAGTCCTGCCTGGGTGAGAGCCCCCCGGCCCAGCTCCAAAGAGTGTGTTTTGCTGTGGTTCAAAGAAGAGCAGATGCCCAAACAGGCTGGCTATGAGCGCAACAGCACCACCATCGCCCCCTGGTTCCACGGTCTGATTTCCAGACAGGAGTCAGAGACCCTGCTGATGAACACAGCAGAGGGCTCCTTCCTGGTGAGGGTGAGTGACAGGATCTGGGGCTACACGCTGTCCTATCGCACGGCCGACGTCTTCAAACACTTCCTGATCGACGCATCAGgagactactacagcttcctGGGTGTGGACCAGAACCGCCACGCCACCTTGGCTGACCTCATCGACTTCCACAAGACAATTCCTGGGCGAGGAAAGGACTCCCGTATAGTTGGGGACGGCACCAGAGtGGTGGAGACTGTGGTCATTCTGATAATGTGGCGGTTCAAGAACGAACGCTGGAGGAACAGCAGCTACAAAAAGTCCACCTCATTGAGGAAAACTGGAAGCTACGAGGAGGAGCTAACAGAAGATGACGACATCAAAACCTACCTCTGTACGTTTGAACGGACAGCACTATGGGAAGGATGGCAAAGGCAGAAGTGGACCAGTCTGCTGGCCCCGTTCCTATCTGGGAATGCCCAAAAGGCGTATTGGGACCTGAACGATGAACAGGCGGCTAACTACGACGGACTCAAACAGGAGATACTCAGCCGCTACGGACAAAGTGTTCCTGGATCGCTTCCTCCGGGCACTACCCCACGACATGAAGAGGGCAGCGAGTCTAGGCGCGCCCCAGACCTTGGAGGGCTGAGTGGGAGCCAGGCCGAGTCGGCGACCCGTTCGGGGAGTCAGAAGGACAGCCCCAATGCTGTGTACCCTGAACCAACAACTGGGAGCAAACGGTTAATCAACCTGCATCTACGGGTCCAGAGTTGGAGGGGGGGGCTGGAACCTGACCCCCCTGGGGAACCACGGGAGGAAGAGCCCAGCCTCCCCCTCCTCGATTTCGAGGGGCCAGTCAAGATACCCCTTGGGGGCCAACTGAGGCGACAATTCGGCACGGCCCAGTGGGAGGATCCTAACTTGAAAGCCGCCGCAGTCCAAGTGATAGCAGTGGATGGACAGCTACTTCCAGGGGCGGAGGTATCCAAGGCAATCACCCTGGAGCTGTTCCACCTCTTTAGCCGGATCAAGCAGATCCGGACCTCTGTCTTCCACCCGCAGACGGAGGGGCTCGTCGAGCGGTTCAATAAAATGCTCAAACAAATGCTGCGGAAGGTCATCGAGCAGGATCTAATCctactctgtccgtgtctgatctgtgagGAGGTGATCACCACATCAGGAGGAGAGCTTCTGCAGGAGGCATGTAAATGTACAGTCTCAGCCACGGACTATGGGGGGCTCTtccaatga

Function

NR:

description
SH2 domain-containing protein 4B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989897.1 True 2587 mRNA 0.56 15 77765944 77782971

Neighbor

gene id symbol gene type direction distance location
LOC110529991 LOC106577131 coding downstream 30396 77695907 ~ 77735548 (-)
tbc1d12a LOC106577134 coding downstream 142316 77606919 ~ 77623628 (-)
LOC110529957 LOC106577135 coding downstream 223214 77535519 ~ 77542730 (-)
LOC110529949 LOC106577136 coding downstream 230487 77526431 ~ 77535457 (-)
LOC110529928 LOC106577138 coding downstream 278757 77484619 ~ 77487187 (-)
LOC110529998 LOC106577125 coding upstream 141565 77924536 ~ 78308978 (-)
LOC110532724 LOC106577124 coding upstream 853313 78636284 ~ 78959395 (-)
LOC110530032 ppp4r3b coding upstream 1297783 79080754 ~ 79092872 (-)
LOC110530078 pnpt1 coding upstream 1310168 79093139 ~ 79109337 (-)
LOC110530099 LOC106577117 coding upstream 1424531 79207502 ~ 79209199 (-)
G87376 NA non-coding downstream 2328 77761121 ~ 77763616 (-)
G87425 NA non-coding downstream 20146 77745427 ~ 77745798 (-)
G87389 NA non-coding downstream 80631 77684947 ~ 77685313 (-)
G87365 NA non-coding downstream 115731 77649962 ~ 77650213 (-)
G87363 LOC106577133 non-coding downstream 118059 77645921 ~ 77647885 (-)
G87832 NA non-coding upstream 83105 77866076 ~ 77866309 (-)
G87841 NA non-coding upstream 97502 77880473 ~ 77880722 (-)
G87865 NA non-coding upstream 127966 77910937 ~ 77911147 (-)
G87866 NA non-coding upstream 128227 77911198 ~ 77911441 (-)
G87908 NA non-coding upstream 188433 77971404 ~ 77972389 (-)
G87090 NA other downstream 286005 77478603 ~ 77479939 (-)
G86448 NA other downstream 898346 76866904 ~ 76867598 (-)
G86132 LOC106577062 other downstream 1157590 76606682 ~ 76608354 (-)
G86063 NA other downstream 1242463 76516251 ~ 76523481 (-)
ccser2a ccser2 other downstream 1365988 76324531 ~ 76399997 (-)
G89418 NA other upstream 1266840 79049811 ~ 79050491 (-)
G90081 NA other upstream 1751787 79534758 ~ 79535572 (-)
LOC110530200 NA other upstream 2100566 79862081 ~ 79917875 (-)
G90190 NA other upstream 2103704 79886675 ~ 79888180 (-)
G90382 NA other upstream 2358588 80141559 ~ 80142157 (-)

Expression


Co-expression Network