LOC100136270 (LOC106577110)


Basic Information

Item Value
gene id LOC100136270
gene name LOC106577110
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 79612637 ~ 79692579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986287.1
AATGAAGCATCTTTCCACAGctgtgtgtagctagctagctaggtaaatcTTCACTGTAGCTAATGCATTGGCATTGCCATGTTATGATTGCCAAGACGATAAAACTTGTCAGCTAACGTGCTTTGCTAGAGAGAGCTTACCTGAATTCCGGGGAAAAGTTAACTAACGTTGATGACGTTTCATCTGCTAGTTAGCTGTTTAACATTAGGCCAGGAAATCAAAGCAGAGCTAGGTGGCTGACTGGCTATCTGCAGATTTCTTAAACATTTGCCACCTGCATCTTCTTGCTCCATGTCTTTGTCACATTCCTGATGGAGACACAATTGCACCAAGAGTTTACATTAACATAAAACACTGGGGACACACTGGCCTGCGGATATCCCAATGCACAGAAAAAAGCATGAAAGTGACATGTTTGTGCTGGGTACTATACACCCATTCCGGAAGACGCACAGGTCCTTCTTTGGGAAACTCTCTCAAGAATTCCGCTTGGTGACTTCAGACAGACAGtcatGGAGAATCCTGGTGTTCAGCATGCTGAATGTCTTCTGTACTGGTTGTCTGCTGATGTGGTGCAGCTCCACCAACAGTATGGCCTTAACAGCATACACATACCTCACCATCTTCGATCTCTTCAGTCTGATCACCTGTCTGCTGAGTTCCTGGGTGGCCATGAAGAAGCCTAGTCAGCTCTTCTCGTTTGGGTTTAAGCGACTGGAGGTCCTTGCTGTGTTTGCCTCCACGGTGCTGGTGCAGCTGGGCGCTCTGTTCATCCTGAAGGAGAGTGTGGAGAGATTCGTGGAGCAGCCTGAGGTGCACACgggtcgTCTGTTGGTGGGGACCTTTGTAGCTCTGTTCTTCAACCTGCTAACTCTTCTCTCTGTGAAGAACAAGCCCTTTGTCTACGTCTCAGAAGCTGCCAGCACCAGTTGGCTCCAGGAGCATGTCGCAGACCTAAGTCGAAGTTTGTGTGGGATTATCCCTGGCCTCAGCAGTGTCCTCCTGCCTCGAATGAATCCATTTGTCTTAATCAACGTGGCCGGAGCTCTCTCACTCAGCATCACCTACATGCTCATAGAGATCAATAATTACAATGCTGTGGACACAGCCTCGGCGGTGGCCATTGGCCTCATGATCTTTGGCACCATGTATCCTATGAGCGTGTACAGCGGGAAGGTGCTCCTTCAGACCACTCCATCCCATGTCATCGGTCAGCTTGACAAATTGCTCAGAGAGGTCTCCACTCTGGAGGGGGTCCTGGAGGTCCGTAACGAGCACTTCTGGACGGTTGGCTTTGGCTCTCTGGCTGGCTCCGTCCATGTCAGAATACGCCGGGATGCCAACGAGCAGATGGTGCTGGCCCATGTGACCAACCGCCTCTTCACCCTCGTGTCCACGCTGACGGTTCAGATTTTCAAGGATGACTGGATCCGGCCTTCCCTCATGGCCGAGGCGCTCCCAGCCAGCACACTCAGACCCTCTGACTACGGGGGCCTGTCTAGCtttgtcccccctccccccaaacccTCGGAGGACATTAATCGTCTCACCTCCACCCCGTTTAAACCCAGCAGCCCGCCGCCAGAGTTCTCCTTCAACACCCCTGGGAGGCATGTCCACCCTGTGGTGCTCCCCAACACCCAGCCTCAAAGGCCTTACGGCATGGGCCTCAGCTACGGAGCCTCCCCCTACACCAGCATGCTCAACCAGGACCTAGCCCGGCCGGGGAtggggatagggatagggatGAACCTGGGAATGGGTGCAGGGATGCCTTCGTCACAAGGTTTCAGAACTGCCTTAGGTGCAGCGCCACAGCGATTTGGAAGCATCCCTGTCCCATCACAGTACAGCCAGTACAGACCCTGATGTTTAGAACATGAGGTATAGAAGTGGGATATTAGAGAGAAAATATTATGGTATTTATTTTTGATGGAACCAGGACATCCATTCTGACCATAGGTTGATTTTCTATCTTTGtatattttttgtattattcTTCGAAAAGCTAATGAGTTGGAAATGAACTGTAGGCCTGTGTTCTTTCTTTGTATACCAGTTCAAATGAAAAGTTATTCTGTTTGAGAATTGTGGAAGAGCTCTATTGCTTTTGTACCATAAATGTGTGCGTTAAACCATGAATTCACTTTCGTGCTCTTAGGACTTCAGTATTTGATTCAGTAACTGTTATTCCCTTGGTTGATGGCCATCACAAGATGGGAGTGATATTTTTAGGTAGAAAAAGTGACCTAATGAAGGGAAAATACATAATGGGGCAATACATACTCATGTTTTGCCCCATTATCTTCTGTATTAGAAGCATCACTTTGATACACTATAATGATTCCTGATGCTAACCTCATTGTGATGTATGTATTATACCTTCTACTATTTTATGGAAACAAATACGTACTGTATCATTTTCCAGTTCAGTATAGTCTACAATAAATTAAATGCAAACTCATGTAAAATCACTGTAATTGCCCTATTGTTTGTCACATATTTGAACTTTCCAGGTCATGTCTATGTTCGTTGAAAGACTCCAATGAGTTTGGTGACTCAGTGGGATGAGAATTGTCAGCTGTCTGCATTTTTAAAAATGCAGTTAGGCCTACTTTAATGTTCCAACATAATATTCCAATCGAAGCTTTAAGATTAAAAAACACTTTCCATGGGCTACCTGTTGAGATGTTGAGGGTGAATGGTGAAGAGTATCATAAATAAAATTGAAGCATATAGGAGATGATTGTCTGGCATGTAATAAACACATTCCTCTTGAATTTGTTTTTC
>XM_021613015.2
ACGAAgtccgactgggaaaaatcgaTTTGAACGTTCATCCAACTAGactttccaacctgaagatcactgacgtcatgatttgaccccGTATTTTTCCTAGTTGCCAGATGTTTTGAACGCAGCACTAGCTATTTAAACCAACTGTGTCGGTCAATTTGGTGAATGTCTTCATGTCATTTTTATTAATACAGAATCTTATTTCTTATCAACCACTAACATAACTGCAATTTCAGCAGAAAGTGGGTCTTGAATGTATCAGTCAGAGATACGTGATTTCATTAAATTAGCGGGGGGGGTTTTTAGCAAAAGAATGGTAtcttctcacctgaagttgtatGACGCCCTGAAATCCCTGGCTGTAAAACCATGTAAACAATATTTTTTCGGGATAGCCAAGAGCTGGATCACGATAAGATGATATACAGATCTGTGAATTTGTGCAGGCACGCGCAACTAAGAGGTTCTCGAAAGTTCAGTCGATTTGAAGGGTCCAAAATGGCGATGGATGGAATGACCACATCTCCATCAGGACTATCGTATCACAATGTTGGGGACTTTTACCCCAGAAAATTCGGTTCCAAGCCGGACGTGGTGCCGTCCGGGGTGACCGAGAGGAAAGTTGGTCCCCTGGATAAACCTGACATGGTGGCGGTGGACGTTATCAACGATTCAGATATCCCAATGCACAGAAAAAAGCATGAAAGTGACATGTTTGTGCTGGGTACTATACACCCATTCCGGAAGACGCACAGGTCCTTCTTTGGGAAACTCTCTCAAGAATTCCGCTTGGTGACTTCAGACAGACAGtcatGGAGAATCCTGGTGTTCAGCATGCTGAATGTCTTCTGTACTGGTTGTCTGCTGATGTGGTGCAGCTCCACCAACAGTATGGCCTTAACAGCATACACATACCTCACCATCTTCGATCTCTTCAGTCTGATCACCTGTCTGCTGAGTTCCTGGGTGGCCATGAAGAAGCCTAGTCAGCTCTTCTCGTTTGGGTTTAAGCGACTGGAGGTCCTTGCTGTGTTTGCCTCCACGGTGCTGGTGCAGCTGGGCGCTCTGTTCATCCTGAAGGAGAGTGTGGAGAGATTCGTGGAGCAGCCTGAGGTGCACACgggtcgTCTGTTGGTGGGGACCTTTGTAGCTCTGTTCTTCAACCTGCTAACTCTTCTCTCTGTGAAGAACAAGCCCTTTGTCTACGTCTCAGAAGCTGCCAGCACCAGTTGGCTCCAGGAGCATGTCGCAGACCTAAGTCGAAGTTTGTGTGGGATTATCCCTGGCCTCAGCAGTGTCCTCCTGCCTCGAATGAATCCATTTGTCTTAATCAACGTGGCCGGAGCTCTCTCACTCAGCATCACCTACATGCTCATAGAGATCAATAATTACAATGCTGTGGACACAGCCTCGGCGGTGGCCATTGGCCTCATGATCTTTGGCACCATGTATCCTATGAGCGTGTACAGCGGGAAGGTGCTCCTTCAGACCACTCCATCCCATGTCATCGGTCAGCTTGACAAATTGCTCAGAGAGGTCTCCACTCTGGAGGGGGTCCTGGAGGTCCGTAACGAGCACTTCTGGACGGTTGGCTTTGGCTCTCTGGCTGGCTCCGTCCATGTCAGAATACGCCGGGATGCCAACGAGCAGATGGTGCTGGCCCATGTGACCAACCGCCTCTTCACCCTCGTGTCCACGCTGACGGTTCAGATTTTCAAGGATGACTGGATCCGGCCTTCCCTCATGGCCGAGGCGCTCCCAGCCAGCACACTCAGACCCTCTGACTACGGGGGCCTGTCTAGCtttgtcccccctccccccaaacccTCGGAGGACATTAATCGTCTCACCTCCACCCCGTTTAAACCCAGCAGCCCGCCGCCAGAGTTCTCCTTCAACACCCCTGGGAGGCATGTCCACCCTGTGGTGCTCCCCAACACCCAGCCTCAAAGGCCTTACGGCATGGGCCTCAGCTACGGAGCCTCCCCCTACACCAGCATGCTCAACCAGGACCTAGCCCGGCCGGGGAtggggatagggatagggatGAACCTGGGAATGGGTGCAGGGATGCCTTCGTCACAAGGTTTCAGAACTGCCTTAGGTGCAGCGCCACAGCGATTTGGAAGCATCCCTGTCCCATCACAGTACAGCCAGTACAGACCCTGATGTTTAGAACATGAGGTATAGAAGTGGGATATTAGAGAGAAAATATTATGGTATTTATTTTTGATGGAACCAGGACATCCATTCTGACCATAGGTTGATTTTCTATCTTTGtatattttttgtattattcTTCGAAAAGCTAATGAGTTGGAAATGAACTGTAGGCCTGTGTTCTTTCTTTGTATACCAGTTCAAATGAAAAGTTATTCTGTTTGAGAATTGTGGAAGAGCTCTATTGCTTTTGTACCATAAATGTGTGCGTTAAACCATGAATTCACTTTCGTGCTCTTAGGACTTCAGTATTTGATTCAGTAACTGTTATTCCCTTGGTTGATGGCCATCACAAGATGGGAGTGATATTTTTAGGTAGAAAAAGTGACCTAATGAAGGGAAAATACATAATGGGGCAATACATACTCATGTTTTGCCCCATTATCTTCTGTATTAGAAGCATCACTTTGATACACTATAATGATTCCTGATGCTAACCTCATTGTGATGTATGTATTATACCTTCTACTATTTTATGGAAACAAATACGTACTGTATCATTTTCCAGTTCAGTATAGTCTACAATAAATTAAATGCAAACTCATGTAAAATCACTGTAATTGCCCTATTGTTTGTCACATATTTGAACTTTCCAGGTCATGTCTATGTTCGTTGAAAGACTCCAATGAGTTTGGTGACTCAGTGGGATGAGAATTGTCAGCTGTCTGCATTTTTAAAAATGCAGTTAGGCCTACTTTAATGTTCCAACATAATATTCCAATCGAAGCTTTAAGATTAAAAAACACTTTCCATGGGCTACCTGTTGAGATGTTGAGGGTGAATGGTGAAGAGTATCATAAATAAAATTGAAGCATATAGGAGATGATTGTCTGGCATGTAATAAACACATTCCTCTTGAATTTGTTTTTC

Function

NR:

description
zinc transporter 6

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K14693 SLC30A6, ZNT6; solute carrier family 30 (zinc transporter), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986287.1 False 2790 mRNA 0.47 15 79612637 79691783
XM_021613015.2 True 3087 mRNA 0.46 15 79612637 79692579

Neighbor

gene id symbol gene type direction distance location
LOC110530138 LOC100380625 coding downstream 117467 79361597 ~ 79495170 (-)
LOC110530112 LOC106577113 coding downstream 261233 79257290 ~ 79351404 (-)
LOC110530107 rps27a coding downstream 400069 79209864 ~ 79212568 (-)
LOC110530099 LOC106577117 coding downstream 403438 79207502 ~ 79209199 (-)
LOC110530078 pnpt1 coding downstream 503300 79093139 ~ 79109337 (-)
LOC110530200 NA coding upstream 169502 79862081 ~ 79917875 (-)
mtrf1l mtrf1l coding upstream 243243 79935822 ~ 79946936 (-)
LOC110530250 LOC106577100 coding upstream 342707 80035286 ~ 80058352 (-)
LOC110530258 LOC106577097 coding upstream 379991 80072570 ~ 80138452 (-)
LOC110530266 LOC106577153 coding upstream 528437 80221016 ~ 80236430 (-)
G90137 NA non-coding downstream 7357 79605007 ~ 79605280 (-)
G90132 NA non-coding downstream 14164 79598110 ~ 79598473 (-)
G90117 NA non-coding downstream 32066 79580371 ~ 79580571 (-)
G90104 NA non-coding downstream 41609 79570814 ~ 79571028 (-)
G90094 NA non-coding downstream 54818 79557337 ~ 79557819 (-)
G90260 LOC106577104 non-coding upstream 233636 79926215 ~ 79928905 (-)
G90291 NA non-coding upstream 268611 79961190 ~ 79989614 (-)
G90271 NA non-coding upstream 461252 80153831 ~ 80157631 (-)
G90406 NA non-coding upstream 492562 80185141 ~ 80185438 (-)
G90081 NA other downstream 77065 79534758 ~ 79535572 (-)
G89418 NA other downstream 562146 79049811 ~ 79050491 (-)
G87090 NA other downstream 2132698 77478603 ~ 77479939 (-)
G86448 NA other downstream 2745039 76866904 ~ 76867598 (-)
G86132 LOC106577062 other downstream 3004283 76606682 ~ 76608354 (-)
G90190 NA other upstream 194096 79886675 ~ 79888180 (-)
G90382 NA other upstream 448980 80141559 ~ 80142157 (-)
nphp1 LOC106577164 other upstream 1248145 80940215 ~ 80966643 (-)
G91941 NA other upstream 1335329 81027908 ~ 81028612 (-)

Expression


Co-expression Network