Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110530200 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 79862081 ~ 79917875 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: anaphase-promoting complex subunit 1 |
| id | name | namespace |
|---|---|---|
| GO:0005680 | anaphase-promoting complex | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005052966.1 | False | 3624 | mRNA | 0.45 | 6 | 79862081 | 79870881 |
| XR_005052965.1 | False | 3982 | mRNA | 0.44 | 6 | 79862081 | 79870883 |
| XR_005052963.1 | False | 4495 | mRNA | 0.45 | 12 | 79862081 | 79880384 |
| XR_005052962.1 | False | 5921 | mRNA | 0.47 | 22 | 79862081 | 79910052 |
| XR_005052961.1 | False | 5961 | mRNA | 0.47 | 21 | 79862081 | 79916796 |
| XR_002474496.2 | False | 2821 | mRNA | 0.43 | 8 | 79906695 | 79917875 |
| XR_002474495.2 | False | 2841 | mRNA | 0.43 | 8 | 79906698 | 79917875 |
| XM_021613088.2 | False | 2192 | mRNA | 0.42 | 6 | 79909365 | 79917875 |
| XM_021613097.2 | False | 2174 | mRNA | 0.42 | 6 | 79909365 | 79917875 |
| TU99311 | False | 2696 | lncRNA | 0.45 | 4 | 79863436 | 79867775 |
| TU99325 | True | 2079 | TUCP | 0.46 | 9 | 79883537 | 79897840 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC100136270 | LOC106577110 | coding | downstream | 169502 | 79612637 ~ 79692579 (-) |
| LOC110530138 | LOC100380625 | coding | downstream | 366911 | 79361597 ~ 79495170 (-) |
| LOC110530112 | LOC106577113 | coding | downstream | 510677 | 79257290 ~ 79351404 (-) |
| LOC110530107 | rps27a | coding | downstream | 649513 | 79209864 ~ 79212568 (-) |
| LOC110530099 | LOC106577117 | coding | downstream | 652882 | 79207502 ~ 79209199 (-) |
| mtrf1l | mtrf1l | coding | upstream | 17947 | 79935822 ~ 79946936 (-) |
| LOC110530250 | LOC106577100 | coding | upstream | 117411 | 80035286 ~ 80058352 (-) |
| LOC110530258 | LOC106577097 | coding | upstream | 154695 | 80072570 ~ 80138452 (-) |
| LOC110530266 | LOC106577153 | coding | upstream | 303141 | 80221016 ~ 80236430 (-) |
| LOC110530293 | LOC106577155 | coding | upstream | 348765 | 80266640 ~ 80349843 (-) |
| G90205 | NA | non-coding | downstream | 123399 | 79677856 ~ 79738682 (-) |
| G90137 | NA | non-coding | downstream | 256801 | 79605007 ~ 79605280 (-) |
| G90132 | NA | non-coding | downstream | 263608 | 79598110 ~ 79598473 (-) |
| G90117 | NA | non-coding | downstream | 281510 | 79580371 ~ 79580571 (-) |
| G90104 | NA | non-coding | downstream | 291053 | 79570814 ~ 79571028 (-) |
| G90260 | LOC106577104 | non-coding | upstream | 8340 | 79926215 ~ 79928905 (-) |
| G90291 | NA | non-coding | upstream | 43315 | 79961190 ~ 79989614 (-) |
| G90271 | NA | non-coding | upstream | 235956 | 80153831 ~ 80157631 (-) |
| G90406 | NA | non-coding | upstream | 267266 | 80185141 ~ 80185438 (-) |
| G90409 | NA | non-coding | upstream | 268601 | 80186476 ~ 80186781 (-) |
| G90081 | NA | other | downstream | 326509 | 79534758 ~ 79535572 (-) |
| G89418 | NA | other | downstream | 811590 | 79049811 ~ 79050491 (-) |
| G87090 | NA | other | downstream | 2382142 | 77478603 ~ 77479939 (-) |
| G86448 | NA | other | downstream | 2994483 | 76866904 ~ 76867598 (-) |
| G86132 | LOC106577062 | other | downstream | 3253727 | 76606682 ~ 76608354 (-) |
| G90382 | NA | other | upstream | 223684 | 80141559 ~ 80142157 (-) |
| nphp1 | LOC106577164 | other | upstream | 1022849 | 80940215 ~ 80966643 (-) |
| G91941 | NA | other | upstream | 1110033 | 81027908 ~ 81028612 (-) |
| G91943 | LOC106577167 | other | upstream | 1112957 | 81030832 ~ 81031358 (-) |
| G91947 | NA | other | upstream | 1117700 | 81035575 ~ 81036138 (-) |
| LOC110530200 | NA | other | upstream | 15762 | 79862081 ~ 79917875 (-) |
| G90190 | NA | other | upstream | 18900 | 79886675 ~ 79888180 (-) |
