LOC110530258 (LOC106577097)


Basic Information

Item Value
gene id LOC110530258
gene name LOC106577097
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80072570 ~ 80138452 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986443.1
TGGGCAGCTCTCTGGTACAGAACCGCGGAGGAGGGCGCTTTACAGAAGGACATTCAGGTTTCATTGATGCACGCTACGCCAGAGACATTTACAAAAAAGAACGAGAGGGAACTTTCGACGCACCACTAGTCCGTCTTCACGCTCTATCTCCAGATTAAGAAGGGTTCAATCGCTGTCCATCTGAAGAGCCATGTCACTTGTTGAAGAATACGAGGAAGGGGAGTATGGGAGAGCGCCGAAGCGACTGAAGACGGCAGAGGTGGAGGAGGGCGAGGaactggaggagggagaggactcAGACTCGGAGTCTGCAGGGCTGCTCGGAGATGTAGAGAATGTAGGAGCCGAGAAAAAAGCCCTGTGGACCACAACGAAATACGGACCTGCAAGACGGgacaGTGGGGAGGACTCCCACAGGATTGCCCAGTCCCCAGTCGTCCATGTCAGGGGGCTGTGTGAGGCTGTGGTGGAGGCTGACCTGGTGGAGGCCCTGGAGAAGTTTGGACCCATATGCTATGTGATGATGATGCCCTTTAAGCGGCAGGCGCTGGTGGAGTTTGAGATGGTGGAGAGTGCTGATAAGTGTGTGGCGTGTGGGAGTAGCGAGGCCGTCTACATCGCAGGCCAGCAGGCCTTCTTTAACTACTCCACCAGCAAGAGGATCACTCGCCCCACCAACTCAGACAACCCCAACAGTGGCAACAAAGTCCTGCTCCTGTCTATCCAGAATCCCCTCTACCCCATCACCACGGACGTTCTCTACACCGTCTGCAACCCCATCGGCAGTGTGATGCGCATCGTCATCTTCAAACGCAACGGCATCCAGGCCATGGTAGAATTTGAGTCCGTCGAGTGTGCTCAGAAAGCTAAGGCTGCTCTCAATGGAGCCGACATCTATGCCGGCTGCTGCACCTTAAAAATCGAATATGCAAGGCCAACTCGCTTGAACGTGATCAGAAATGACAACGAGAGCTGGGACTACACAAAACCTTACCTGGTCCGAAGAGATGTTTCAGAGCGTGGGAAGGGCAGGCAGGCCATACTGGGGGAGCACCCGTCCTCTTACGGAGACAATGGATACGGGTCACACTGCCCCCTGCTGCCTCTCCCAGGGAACAGCAGGTACAAGCTGAGCTCCCATGACATCCCAGAGGTAGTGGCTTACCCCCTGCCCCAAAGCTCCTCCTACAACAACCACGGCTCTAGCTCTGTCGCCATGGTGAGCGGCCTGCACCCCACCAAGATGAACTGCACCCGCATCTTCAACCTTTTCTGTCTCTATGGCAACATCGAAAAGgtgaAGTTCATGAAGAGTGTCCCGGGCACTGCCCTAGTAGAGATGGGGGATGAGTATGCAGTGGACAGGGCCATCACTCACCTCAACAGCATCAAGGTGTTTGGCAAGCGGCTTAATGTCTGtgtgTCCAAGCAGCATGCGGTCATACCCAGTCAGGTGTTTGAACTGGAGGACGGCAGCAGCAGCTATAAGGACTTTGCCATGACCAGGAACAACCGCTTCACCAGCCAAGGCCAGGCCTCCAAGAACATCATCCAGCCACCCTCCTGTGTGTTGCACTACTACAATGTTCCTCCCTGCATCTCAGAGGACCAGCTACTGAGGCTATGCTCAGAACATGATGTGCCGGGTTTCACCAAGTTCAAGATGTTTGATGCAAAGCCCTCCTCCAAAACTATCTCGGGGTTGTTAGAGTTTGACTCCAAGACGCACGCGGTTGAGGTCTTGACCGTCCTAAACCACTACCAGATCAGAATACCAAATGgctctaacccctacaccctgaAGCTGTGCTTCTCCACGTCCTCTCACCTCTGAGGAACTCAGGACCAGGGCACCAGCAGGACTGACCAGAGCCCagtaggagatggagagagataaaggatGGGGCTGGGAGGGACAGAGTACTGAGCTAACAAGACACTGAGACTCACTGTCTCCCGTTGAAGTGGAGAAGACTACTGAAACACACAAGTGTGAAACACTGGAAAATTGCTGAAGAGGTTTTCTCTTGTACCTCTTGTTTTCTAGTATTTTCTGTTCTGTTAGTTTTTAAGTTGTCTCTATATAGAGAGAGCCAATCAGAACTAAGAACAGAGAGACGACACCCTCTCTTCCCAGCGTCCGTTGGGGCTGAGCATGGTACTGTAATGTAACAGATGACCCCTGAAAAGACTTGTTGTGGACAGAATGTGATTACTTGCCAATTTTTGCATTGTGTTCGAAGACTGAATAGAGGACGTCCAATATGCATCCATGCTGGTAAAGACTATCCAAAATGGTCGCCGTATTTATGGGTGGACAGTGCTGCATTTATGCTCACCTTATTTAGCTGAGCAGCAGAAACTCAGTCGGTACTTCAGTGGAACAATGTGTCAATATGAATTTAAAATCGCACTGTAACATGTAAATGTGTACATAATTGAAATGAAAGCTCTGCTATAGAGGGTTGTGACAGGGGAGCGGGTGATATTATTCATCTTATTTGAGGTCATTGTGTCAGCAGGTGTTTTGCTTTGGAGTGGACCGTTTAATGATGCGTTTTAGACACTGTGTTTGTACGATGTTTACACATGAAGAGCCCATGGTCTGTGTAGTATGTCAGTGTTTTGGGGCACACTGTTTGAATGTTAGTACTGGGTTCAGTGTAGTATCATGGCTCGCCTGCACTGGTTCAGTGTCAGTAGTTTTGTACATTCAGACTGTTTTAGTGTTTAGTGACACGCCGATATGTCTTGTGTTCACAAAATGGCTGTATCCAGAATCATTATACATCACCCCTAGCTCTTTGCCTCATTAATTAGCAAATATTTTGATATTAATtagtatatttaaaacatttatgGACATTTTCAGATGTCCTAATCCCTCAAATACCTAAGGTTATTTGGGAACTGCCCTGTCAAAGAGTGTAACAAATAATATGACTACAAATTCTTAGCACAACAAACTTGGGATTCCATTTTACTTGCAAAATAAGGAAATTACATGTTAAAGCCAAATTCCATTGGTTTACTCTGTATGTACTATTGTATAACATGAgcaattacatacagtacaaacCTTAAGGTGTTAATCAACCTTTCTGCAAGTAGCAAATTGCTATTGTATCTACTGCAGGGGAGGCTTTTCCAGGCACAGGATCAGGTTTGATTGGTTCTGGATGCATCCTGAGAACGTGACATTCATTAAGCATTCAACAGTCTACAGATCCTCTTACATTATTATTCCAGAATTGTTCCACATTCCGACTTCCATTTCAAAAGCCTGGAGTTACCATAAACAGCAGTCTTGTGCTTAAGTTCATGTTATCATCAAATGTAAGACACTACACGCATGTTCAGGTGGGTAGATCCCATGACTTCCATGTCTGACTGGTCATTAAATGGCGTTGTATCTATGG
>XM_036986453.1
TGGGCAGCTCTCTGGTACAGAACCGCGGAGGAGGGCGCTTTACAGAAGGACATTCAGGTTTCATTGATGCACGCTACGCCAGAGACATTTACAAAAAAGAACGAGAGGGAACTTTCGACGCACCACTAGTCCGTCTTCACGCTCTATCTCCAGATTAAGAAGGGTTCAATCGCTGTCCATCTGAAGAGCCATGTCACTTGTTGAAGAATACGAGGAAGGGGAGTATGGGAGAGCGCCGAAGCGACTGAAGACGGCAGAGGTGGAGGAGGGCGAGGaactggaggagggagaggactcAGACTCGGAGTCTGCAGGGCTGCTCGGAGATGTAGAGAATGTAGGAGCCGAGAAAAAAGCCCTGTGGACCACAACGAAATACGGACCTGCAAGACGGgacaGTGGGGAGGACTCCCACAGGATTGCCCAGTCCCCAGTCGTCCATGTCAGGGGGCTGTGTGAGGCTGTGGTGGAGGCTGACCTGGTGGAGGCCCTGGAGAAGTTTGGACCCATATGCTATGTGATGATGATGCCCTTTAAGCGGCAGGCGCTGGTGGAGTTTGAGATGGTGGAGAGTGCTGATAAGTGTGTGGCGTGTGGGAGTAGCGAGGCCGTCTACATCGCAGGCCAGCAGGCCTTCTTTAACTACTCCACCAGCAAGAGGATCACTCGCCCCACCAACTCAGACAACCCCAACAGTGGCAACAAAGTCCTGCTCCTGTCTATCCAGAATCCCCTCTACCCCATCACCACGGACGTTCTCTACACCGTCTGCAACCCCATCGGCAGTGTGATGCGCATCGTCATCTTCAAACGCAACGGCATCCAGGCCATGGTAGAATTTGAGTCCGTCGAGTGTGCTCAGAAAGCTAAGGCTGCTCTCAATGGAGCCGACATCTATGCCGGCTGCTGCACCTTAAAAATCGAATATGCAAGGCCAACTCGCTTGAACGTGATCAGAAATGACAACGAGAGCTGGGACTACACAAAACCTTACCTGGTCCGAAGAGAGCGTGGGAAGGGCAGGCAGGCCATACTGGGGGAGCACCCGTCCTCTTACGGAGACAATGGATACGGGTCACACTGCCCCCTGCTGCCTCTCCCAGGGAACAGCAGGTACAAGCTGAGCTCCCATGACATCCCAGAGGTAGTGGCTTACCCCCTGCCCCAAAGCTCCTCCTACAACAACCACGGCTCTAGCTCTGTCGCCATGGTGAGCGGCCTGCACCCCACCAAGATGAACTGCACCCGCATCTTCAACCTTTTCTGTCTCTATGGCAACATCGAAAAGgtgaAGTTCATGAAGAGTGTCCCGGGCACTGCCCTAGTAGAGATGGGGGATGAGTATGCAGTGGACAGGGCCATCACTCACCTCAACAGCATCAAGGTGTTTGGCAAGCGGCTTAATGTCTGtgtgTCCAAGCAGCATGCGGTCATACCCAGTCAGGTGTTTGAACTGGAGGACGGCAGCAGCAGCTATAAGGACTTTGCCATGACCAGGAACAACCGCTTCACCAGCCAAGGCCAGGCCTCCAAGAACATCATCCAGCCACCCTCCTGTGTGTTGCACTACTACAATGTTCCTCCCTGCATCTCAGAGGACCAGCTACTGAGGCTATGCTCAGAACATGATGTGCCGGGTTTCACCAAGTTCAAGATGTTTGATGCAAAGCCCTCCTCCAAAACTATCTCGGGGTTGTTAGAGTTTGACTCCAAGACGCACGCGGTTGAGGTCTTGACCGTCCTAAACCACTACCAGATCAGAATACCAAATGgctctaacccctacaccctgaAGCTGTGCTTCTCCACGTCCTCTCACCTCTGAGGAACTCAGGACCAGGGCACCAGCAGGACTGACCAGAGCCCagtaggagatggagagagataaaggatGGGGCTGGGAGGGACAGAGTACTGAGCTAACAAGACACTGAGACTCACTGTCTCCCGTTGAAGTGGAGAAGACTACTGAAACACACAAGTGTGAAACACTGGAAAATTGCTGAAGAGGTTTTCTCTTGTACCTCTTGTTTTCTAGTATTTTCTGTTCTGTTAGTTTTTAAGTTGTCTCTATATAGAGAGAGCCAATCAGAACTAAGAACAGAGAGACGACACCCTCTCTTCCCAGCGTCCGTTGGGGCTGAGCATGGTACTGTAATGTAACAGATGACCCCTGAAAAGACTTGTTGTGGACAGAATGTGATTACTTGCCAATTTTTGCATTGTGTTCGAAGACTGAATAGAGGACGTCCAATATGCATCCATGCTGGTAAAGACTATCCAAAATGGTCGCCGTATTTATGGGTGGACAGTGCTGCATTTATGCTCACCTTATTTAGCTGAGCAGCAGAAACTCAGTCGGTACTTCAGTGGAACAATGTGTCAATATGAATTTAAAATCGCACTGTAACATGTAAATGTGTACATAATTGAAATGAAAGCTCTGCTATAGAGGGTTGTGACAGGGGAGCGGGTGATATTATTCATCTTATTTGAGGTCATTGTGTCAGCAGGTGTTTTGCTTTGGAGTGGACCGTTTAATGATGCGTTTTAGACACTGTGTTTGTACGATGTTTACACATGAAGAGCCCATGGTCTGTGTAGTATGTCAGTGTTTTGGGGCACACTGTTTGAATGTTAGTACTGGGTTCAGTGTAGTATCATGGCTCGCCTGCACTGGTTCAGTGTCAGTAGTTTTGTACATTCAGACTGTTTTAGTGTTTAGTGACACGCCGATATGTCTTGTGTTCACAAAATGGCTGTATCCAGAATCATTATACATCACCCCTAGCTCTTTGCCTCATTAATTAGCAAATATTTTGATATTAATtagtatatttaaaacatttatgGACATTTTCAGATGTCCTAATCCCTCAAATACCTAAGGTTATTTGGGAACTGCCCTGTCAAAGAGTGTAACAAATAATATGACTACAAATTCTTAGCACAACAAACTTGGGATTCCATTTTACTTGCAAAATAAGGAAATTACATGTTAAAGCCAAATTCCATTGGTTTACTCTGTATGTACTATTGTATAACATGAgcaattacatacagtacaaacCTTAAGGTGTTAATCAACCTTTCTGCAAGTAGCAAATTGCTATTGTATCTACTGCAGGGGAGGCTTTTCCAGGCACAGGATCAGGTTTGATTGGTTCTGGATGCATCCTGAGAACGTGACATTCATTAAGCATTCAACAGTCTACAGATCCTCTTACATTATTATTCCAGAATTGTTCCACATTCCGACTTCCATTTCAAAAGCCTGGAGTTACCATAAACAGCAGTCTTGTGCTTAAGTTCATGTTATCATCAAATGTAAGACACTACACGCATGTTCAGGTGGGTAGATCCCATGACTTCCATGTCTGACTGGTCATTAAATGGCGTTGTATCTATGG

Function

NR:

description
heterogeneous nuclear ribonucleoprotein L-like isoform X2

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13159 HNRNPL; heterogeneous nuclear ribonucleoprotein L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986443.1 False 3419 mRNA 0.48 13 80072570 80138452
XM_036986453.1 True 3410 mRNA 0.48 13 80072570 80138452

Neighbor

gene id symbol gene type direction distance location
LOC110530250 LOC106577100 coding downstream 14218 80035286 ~ 80058352 (-)
mtrf1l mtrf1l coding downstream 125634 79935822 ~ 79946936 (-)
LOC110530200 NA coding downstream 154695 79862081 ~ 79917875 (-)
LOC100136270 LOC106577110 coding downstream 379991 79612637 ~ 79692579 (-)
LOC110530138 LOC100380625 coding downstream 577400 79361597 ~ 79495170 (-)
LOC110530266 LOC106577153 coding upstream 82564 80221016 ~ 80236430 (-)
LOC110530293 LOC106577155 coding upstream 128188 80266640 ~ 80349843 (-)
thumpd2 thumpd2 coding upstream 225575 80364027 ~ 80376924 (-)
slc8a1b LOC106577160 coding upstream 271025 80409477 ~ 80647140 (-)
LOC110530369 LOC106577163 coding upstream 764885 80903337 ~ 80905779 (-)
G90291 NA non-coding downstream 82956 79961190 ~ 79989614 (-)
G90260 LOC106577104 non-coding downstream 143665 79926215 ~ 79928905 (-)
G90205 NA non-coding downstream 333888 79677856 ~ 79738682 (-)
G90137 NA non-coding downstream 467290 79605007 ~ 79605280 (-)
G90271 NA non-coding upstream 15379 80153831 ~ 80157631 (-)
G90406 NA non-coding upstream 46689 80185141 ~ 80185438 (-)
G90409 NA non-coding upstream 48024 80186476 ~ 80186781 (-)
G90429 NA non-coding upstream 65840 80204292 ~ 80204504 (-)
G90439 NA non-coding upstream 72557 80211009 ~ 80211228 (-)
G90190 NA other downstream 184390 79886675 ~ 79888180 (-)
G90081 NA other downstream 536998 79534758 ~ 79535572 (-)
G89418 NA other downstream 1022079 79049811 ~ 79050491 (-)
G87090 NA other downstream 2592631 77478603 ~ 77479939 (-)
G90382 NA other upstream 3107 80141559 ~ 80142157 (-)
nphp1 LOC106577164 other upstream 802272 80940215 ~ 80966643 (-)
G91941 NA other upstream 889456 81027908 ~ 81028612 (-)
G91943 LOC106577167 other upstream 892380 81030832 ~ 81031358 (-)
G91947 NA other upstream 897123 81035575 ~ 81036138 (-)

Expression


Co-expression Network