LOC110530266 (LOC106577153)


Basic Information

Item Value
gene id LOC110530266
gene name LOC106577153
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80221016 ~ 80236430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986459.1
CGGGGGTAGCagcagaggtagaggaggaaggggaaggagctctggtggagggaggggtagaggtggCGGAGATAGGGGTAGGGGAAAGGTTAATGGTAGGGGTTTACCCAAATCCCTAATTAGCGAGAGACCTCGGCCTAGAATGCTGAATGAAGACAGTCCTCGCCTCAGGCCTGAGATGATGGGCAACATGCCCATGCAGAAGATCTTCATGACCAATGAGAACCAGGAGCAGGTGAAAGAGCTGCTGAGAGAGCTGCAGACCCAGGACTACGACGACGAGCCATATGATGAAGAAGAGGAgtatgaggaagaggaggagtatgATGAGCTGGATTACCGGGAGGAAGGGCAGTTCTGGAACACCCATGATGAGCCTGTTGGGAGTGCAGAGAGCCCCGTCTTTGATCCTGACTCTGAGGATGAACGGCGGCCCACTCCCGAGCCAGTCATAGGACTGTTTGCCATAGGAAAGCTCTGCAGGTATGGTTTCGACCGGGAGCGCAGCAAGCAGGCCCTGGAGGCAGGTGTTGGGGAGGTGGGAGCCACCATGGAACAGCTGCTCCTCCAGGTCTTCTCCGAGCGCTACGGCCCCAAAGCTGTCTCCCCCGATGGCCTCCAAGGGGCGCCCATGGACGAGTGCCTCACCCAGAGACAGGAGGAGGCCTTGGCCCTCACCGCCATCTACGGCGACCGCTTCACCGAGCGCATCGCCAACAGCGTTTGGACTGTCACTTTGGACCCTGACTTCCTGGCTGACATTGCAGGAGGAAAACAGAACACATCTGCTCGTACCGACAACTCCGTTCAAATTAGGGACGTCTGCAGCTTCTACCTAAAGGGTGCCGGCTGCAAGTTTGGAGCTAAGTGCAAGTATAAGCACCAGATGCCCACCAAGGGAACAGCTTCGGGCCCTCAAGACCCCGTGGGAGCCAGCCAACCTGGGTTCAGCAGCTACTCCTCTCCAGAGTACGTGCTGGAGGTCCGCTTCCCTAAAGGGAACCGCTACCCCTTCCAGGCCCCTGTCGTGGCCTTCAGCACTAACGATGAGACCATAGGGTCCGCAGCCAGGCTGAGTGTCACAGAGCATCTGTTCGGGGAGGCCTTGGCTGCAGCGAAGGAGGGGGAGCCCGTGGTCTACACCCTGATCACTTGCTGCGAGGACGAGGTCACCATGAAGGAGCTGCTGTCAGTCACGCATCATAAATACAGCTCCCTGCCCCCTGTGGTAGTGGCTCCACCCCCTGCTGCTGTTGCCATGACGAAGAGCAAGAGTGGGAGGAGCAACACGGCATCACATGTGGAGAGCAAGAGTAGTACGAACATCAACAGAACTACCCCAACTAACAGCACCGCCAACAGCAGCACTGCCCCAACTAACAGAACAAGCAGCCACAGGATACAGCAGGCCACAGAAgacttggaggaggaggaggatgaggaaggagTGGTGGTTCCTCAGACTGAGAGCTATGTCAACCTGAGGAAGAAGATGGTGAAGAGACATGAAGAGAGGACAGGGAGCCAGCAAAAGGAGAACGCCAAACTGTGTCGAGAGTTCAGGACAAAACAGTCATCCAGGCGCTTCACCTCCATGTTGCAGCAGAGACAGAAGCTGCCTGCTTGGAATGAGAAGGAGAACATCCTGGACCTGTTGGACAACTGCCAGGTGCTAGTGGTCAGTGGCATGACTGGGTGTGGTAAGACCACCCAGATCCCTCAGTTCATTCTGGATGCATCTCTGAGTGGGCCTACTGACCAGGTGGCTAACATCATCTGCACCCAGCCCCGCCGAATCTCTGCCATCTCCGTGGCTGAGAGGGTGGCACAGGAGCGGGCAGAACGCCTCGGTAACTCAGTGGGTTACCAGATCCGCCTGGAGACTGTCAGGtctgcgGCCACCAGGCTGCTGTACTGCACCACAGGAGTTCTACTGAGGAGGCTGGAGGGGGAGGCAGACCTCACAGGGATCTCTCATGTCATAGTGGATGAGGTGCATGAGCGCACAGAGGAGAGTGACTTCCTCCTGTTGGTGTTGAAGGATCTGATGGTACAGCGACCAGATCTGAAGATCATCCTGATGAGTGCCACCCTCAACGCCGACCTCTTCTCCCAGTACTACAACAACTGTAACACCATCCACATACCAGGACGCACTTTCCCTGTCGACCAGTTTTTCCTGGAAGATGCAGTTGCCAAAACCCGGTATGTGATTGAGGATGGCAGTCCGTTCATGCGCTCGGGCGGGGGGAAGTCCTCATCAGGCAGTaagggaggcagagggggggCCAAAGACCCCGTGGACCAGCTGGGAGACGACATGTGGTCCTTCATGAACCTCCAGAAAAAAGACTTCATTAAAGACTCCATCCCTGACCAGCAGCTCAGCCTGCAGGAACTCACTGTCCGATACAAAGaCACCAAGAAGTCTGTCTTGAAGACCATATCTGCCATGGACCTGGATAAGATCAACATGGACCTGGTGGAGAGTGTGCTGGAGTATATTGTGGACGGGGACCATAGCTACCCTCCAGGTGCTGTGTTGGTATTCATGCCGGGCCTGGCTGAGATTAAGACTCTTTATGAGCAGCTCCAGTCCAACAGGATGTTCAACAACCGGAACAGAGCCAGgtgTGTGGTGTACCCGCTCCACTCGTCCCTGTCTAACGAGGAGCAACAGGCTGTGTTCAAGCGGCCACCAGAGGGCGTCACCAAGATCATTATCTCCACCAACATCGCTGAGACCTCCGTTACCATCGACGACGTGGTCTACGTTGTGGACTCAGGCAAGATGAAGGAGAAGAGTTACGACGCCTCTAAGAGCATGGAGAGCCTGGAGGAGTCGTGGGTGTCCCGTGCCAACGCCCTGCAGAGGAGAGGGCGAGCTGGCCGCGTGGCCTCAGGGGTGTGCTTCCATCTCTTCACCAGCCACTGCTTCCAACACCAACTGGCAGAGCAGCAGCTGCCAGAGATCCAGAGAGTCCCCTTGGAGCAGCTCTGCCTCAGGATTAAGATCCTGGATGTGTTTGCGGAGCGGCCATTGGATTCTGTGTTCTCCCGGCTCATTGAGCCCCCGGCCATGGGCAGTCTGGATGCGGCCAAGCAGCGTTTGCAGGACCTGGGGGCTCTGACGGCCGACGAGAAGCTCACCCCTCTGGGCTATCACCTGGCCTGTCTGCCTGTGGACGTGCGCATTGGCAAACTCATGCTGTTTGGTGCCATCTTTCGCTGCCTGGACCCTGCCCTCACCATCGCTGCCAGCCTGGCTTTCAAGTCCCCTTTCGTGTCTCCTTGGGATAAGAGGGAGGAGGCCAATGAGAAGAAGCTGAATTATGCCCTGGCCAACAGTGACCATCTGGCCCTGCTGCAGGCATACAAGGGCTGGTGTGGTGCAGCCAGAAACGGGAATCAGGCCGGGTTTCAGTACTGCAGAGAGAACTTTCTGTCTAGCCGGGGCTTACAGGAGATAGCCAGTCTGAAGAGGCAGTTTACAGAGCTGCTGTCTGATATTGGCTTCGTCAAGGAGGGACTGAAGGCTAGAGTCATTGAGAGAATGGCTGCCAAAGGGACTGATGGTATAATGGAGGCTACAGGCTGTGAGGCCAACCTCAACTCTGACAACATCAGGTTGATGTCTGCCATGCTCTGTGCTGCCCTATATCCCAATGTAGTACAGGTGAGGTCTCCTCATGAGAAGTTCAAGCAGACCAGTAAAGGAGCGGTGAAGATGCAGCCCAAAGCAGACGAGTTGCGCTACATGACCAAGAATGACGGCTGTGTCCACGTACACCCCTCCTCCGTCAACTACACGGTGCGCCACTACGACAGCCCCTACCTGGTGTACCATGAGAAGGTGAAGACGAGCCGTGTGTTCATCAGAGACTGCAGCATGGTGTCGGTGTACCCCTTGGTGCTGTTTGGGGGGGGACAGGTCAACGTTGAGCTGCAGAAGAGCGAGTTCGTCATCTCCCTGGACGACGGCTGGATCCGGTTCGCCGCAGCATCGCACCAGGTGGCAGAGCTGGTGAAGGAGCTGCGCTGGGAGTTGGACCAGCTCCTCGAAGATAAGATCAGAAACCCCAGCATGGACCTGTGTACTTGCCCGAGAGGCTCCCGTATCATCCACATGATCGTCAAGCTCATCACCACCCAGTAAACCACCCCGCTCCCCTTCATTACACACCCAGCACTTGTCTTTAGATGAATACTTTGCTCCACCTCCCAGTCTTACAGTACATTGGATCAAGTCTTATTGGTGGTAGCATTGCAATGATACAAGTGCTGCTGAACAAGCATACTGAAATCGCTGTTTTTGCTGTCATAGGAAGTGCAATAGATTTGGCAGAGTTGTTTGTTAAATTTGAACTGAATTGCTAAAAAGGTTATTTACCTGAAATGGTAATTTGCCattgtttgtgtatatatatattttggccaCATTTCCTGTATATATGGGAAACTCAAGTTGCGTTTTATTATAGGTTGTGCCTTTCTTGCACACAACTAAAAATAGCATTTGAGTCCATATTGGATTCCCGTACTGAAAATGGTTGCACATTTATGCTTTTGTGTGTATTTAGAAATAACTAATGCATGATTGACTGAAATGTGAATAAAGCTCTAAGAGCTTC

Function

NR:

description
putative ATP-dependent RNA helicase DHX57

GO: NA

KEGG:

id description
K13026 DHX57; ATP-dependent RNA helicase DHX57

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986459.1 True 4631 mRNA 0.55 21 80221016 80236430

Neighbor

gene id symbol gene type direction distance location
LOC110530258 LOC106577097 coding downstream 82564 80072570 ~ 80138452 (-)
LOC110530250 LOC106577100 coding downstream 162664 80035286 ~ 80058352 (-)
mtrf1l mtrf1l coding downstream 274080 79935822 ~ 79946936 (-)
LOC110530200 NA coding downstream 303141 79862081 ~ 79917875 (-)
LOC100136270 LOC106577110 coding downstream 528437 79612637 ~ 79692579 (-)
LOC110530293 LOC106577155 coding upstream 30210 80266640 ~ 80349843 (-)
thumpd2 thumpd2 coding upstream 127597 80364027 ~ 80376924 (-)
slc8a1b LOC106577160 coding upstream 173047 80409477 ~ 80647140 (-)
LOC110530369 LOC106577163 coding upstream 666907 80903337 ~ 80905779 (-)
LOC118965579 LOC106577163 coding upstream 683518 80919948 ~ 80922357 (-)
G90443 NA non-coding downstream 5448 80214799 ~ 80215568 (-)
G90439 NA non-coding downstream 9788 80211009 ~ 80211228 (-)
G90429 NA non-coding downstream 16512 80204292 ~ 80204504 (-)
G90409 NA non-coding downstream 34235 80186476 ~ 80186781 (-)
G90406 NA non-coding downstream 35578 80185141 ~ 80185438 (-)
G90744 NA non-coding upstream 354 80236784 ~ 80237768 (-)
G90798 NA non-coding upstream 119478 80355908 ~ 80356132 (-)
G90799 NA non-coding upstream 119707 80356137 ~ 80356357 (-)
G90839 NA non-coding upstream 188753 80425183 ~ 80426740 (-)
G90847 NA non-coding upstream 210501 80446931 ~ 80447829 (-)
G90382 NA other downstream 78859 80141559 ~ 80142157 (-)
G90190 NA other downstream 332836 79886675 ~ 79888180 (-)
G90081 NA other downstream 685444 79534758 ~ 79535572 (-)
G89418 NA other downstream 1170525 79049811 ~ 79050491 (-)
nphp1 LOC106577164 other upstream 704294 80940215 ~ 80966643 (-)
G91941 NA other upstream 791478 81027908 ~ 81028612 (-)
G91943 LOC106577167 other upstream 794402 81030832 ~ 81031358 (-)
G91947 NA other upstream 799145 81035575 ~ 81036138 (-)
LOC110532756 LOC106577174 other upstream 944394 81175845 ~ 81449471 (-)

Expression


Co-expression Network