LOC110530346 (LOC106577158)


Basic Information

Item Value
gene id LOC110530346
gene name LOC106577158
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80359816 ~ 80364026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613323.2
TGACATTTCATCGCGCGCTCTGTGCGCCGCACCTGTTTTAATCCCGCAAGACTGGAAATCCGAAGCACAGGACACAGAGAGTCGGCCGCGCACAGGTTACAGATATACACACCTCATCCCACATTTATAGGATATACTGAAGTCAGGGAGTCGACGAAGTGGGAGAGCAGGAACACGAGTCAGGTTATTATTGTGCCTGCACCCAGCCGGAGATGCCAGGACTTTACAGCCTTTTCGGCATCATGTAGGACAGGATGAAGCCCTGCACACCCGTGTTGATTAGGAGGAGTGAAGTGGACGGAGTGACAGATGCTTCCTTGACCAACTCTTCAAATGTTGATGACCAAAGGATGGAGAAACAGACCTTGGTGACAGCTATCAGTTTGTCCATGAGCCTGGCGTCACTGGTGCTTCTCATCACCGCTATCATGACTGACCACTGGTACGAGACGGACACCACACGGCACAGGCAGAACTGCGACCAGTTCGGTCCGGACGCCAACGAACACAAGAACCGGTTGATGCCCATCTATCACCTGCCCCTGATGGACAGCAGCAATCCTCGGAGGAACCAGGCGCTGCTCCGGGCGATCCACGTCGGGAGTAGAGAGGAGCTCCTGGAAAATTGGAGGTCCATTTTGGGAATGGGAATTTTAGAAACGGAATGCGGGCGCCCCATTTTCTCCACTTACTCTGGACTTTGGAGGAAATGTTATTATCTAGGAAAGGACAAGGACATCGACAACCTCATATCCAAGGGTATAGCCCAGCGATGCACCATCATCAAGTACCATTTCTCCCAGCCCATACGTCTCCGCAACATCCCTCTCAACCTGACCCGTACCATCCAGCAGGACGAGTGGCACCTCTTACACCTGCGGCGGATCACAGCAGGGTTTCTAGGCATGGCGGCAGCCGTTCTGTTGTGTGGCTGCATCGTGGCGTCTGTCAGCTTCGCCTGGGAGAAGTCTCTCACTCAGCACGTCTCTGGGCTGCTCTTTCTCATGGCAGGTATCTTCAGCACCATCTCCCTGTGTACCTACGCGGCCAACGTGTCCTACGACCTGGCCAGGGTCCCTCCCTTCATCTACGGGCTGCCTGCTGACGTGGAGCATGGCTACAGCTGGTCCAGCTTCTGTGCCTGGCTCAGTCTGGGGCTGACGGTGACGTCTGGATGCCTGTGCACCACCTTCCCCATCCTCAGCTGTAGCAGCAGCAAAGCCCAGCAGGGCAAGGGTGCCCCCAACGCCGGTGTCTGACACACATCTTGCTGCGTTTGATATACACTTTGCTgtgtgttacacacacactgagctgcagCAAGGGCTTGTAGGAAGAAAGAGTCTAGTATGTCTGTGTCCGACACACCCCTTTACTGCGTCGGACACACCTCTTACTGCATCTTTCACATCAACAGCCTGCTGACCAAGCCCATCCCCAGACATCTGTCTGACACTGCTGCAGCAGGCGCCTGGGACTAACATTGACTCCTATGTTTTCAGGGTGAAAACCCTTCTGAGTGCTTCTACTAGACCCTGCATCTAAATCTAGGTTACCTCCATGGAGCAAAACATCCTGGAATGATGTggctcaacccccccccccccccccccccccccatcatcaaTGGTTATCAACCCCTGATCCTCCCAGTGGAACCAAAGCGGAGTGTATTTACCTTAGTCTCAGTGGATGTATTCCGTCATCTAATCGCAGACAGTGTATAATTGTTGGATGTGAGTCGTGGTCTGATTGGGTAAATAGAGCTGCAGAATTTCAGACTCCTGAGAAGTGAAACTCAAGAACTATGCATTATTTCCTTCCACCATTAACAAAGTAATTGGAAATATAGAATAAAAGTAGTAACACA

Function

NR:

description
transmembrane protein 178A-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613323.2 True 1870 mRNA 0.53 4 80359816 80364026

Neighbor

gene id symbol gene type direction distance location
arhgef33 LOC106577154 coding upstream 96082 80248099 ~ 80267460 (+)
slc29a1a LOC106577101 coding upstream 326039 79956334 ~ 80033777 (+)
vip LOC106577104 coding upstream 430907 79924696 ~ 79928909 (+)
bcl2l11 bcl2l11 coding upstream 577569 79766233 ~ 79782247 (+)
acoxl acoxl coding upstream 594457 79720751 ~ 79765359 (+)
LOC110530352 LOC106577159 coding downstream 19540 80383566 ~ 80386413 (+)
LOC110532748 LOC106577167 coding downstream 650679 81014705 ~ 81056605 (+)
LOC110530417 LOC106577168 coding downstream 692969 81056995 ~ 81078956 (+)
zcchc24 LOC106577169 coding downstream 720008 81084034 ~ 81175099 (+)
LOC118966718 NA coding downstream 967520 81331546 ~ 81332112 (+)
G90528 NA non-coding upstream 2216 80357379 ~ 80357600 (+)
G90527 NA non-coding upstream 4092 80355319 ~ 80355724 (+)
G90446 NA non-coding upstream 141764 80217712 ~ 80218052 (+)
G90055 NA non-coding upstream 181741 80177604 ~ 80178075 (+)
G90542 NA non-coding downstream 39489 80403515 ~ 80408049 (+)
G90556 NA non-coding downstream 72856 80436882 ~ 80439031 (+)
G90671 NA non-coding downstream 289879 80653905 ~ 80757902 (+)
G90724 NA non-coding downstream 364497 80728523 ~ 80754315 (+)
G91051 NA non-coding downstream 393969 80757995 ~ 80758220 (+)
G89667 NA other upstream 810165 79549017 ~ 79549651 (+)
G87159 NA other upstream 2789346 77570015 ~ 77570470 (+)
G86614 NA other upstream 3235389 77123935 ~ 77124427 (+)
G86019 NA other upstream 3723880 76631745 ~ 76635936 (+)
G91064 NA other downstream 401088 80765114 ~ 80766155 (+)
G91541 LOC106591086 other downstream 1174305 81538331 ~ 81541400 (+)
G91779 NA other downstream 1513513 81877539 ~ 81879178 (+)
LOC110530526 LOC106577204 other downstream 1542106 81906132 ~ 81907399 (+)
LOC110530572 LOC106577202 other downstream 1764618 82128619 ~ 82163498 (+)

Expression


Co-expression Network