thumpd2 (thumpd2)


Basic Information

Item Value
gene id thumpd2
gene name thumpd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80364027 ~ 80376924 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986568.1
TGTAAACAAAACAACATGGCAGCCCACGTAGGGAACGGCATGGAGCCTTTCCTGATTCAGGAGGTGAAGACCAAACTTGCAGCCAAAGATGTGGATCACATCCCTGGAAAAGTGTTCTTCACCACCTCGTTTGAAATAAAGCAAGTGAGGGAGCTGAAATCTGCAGAGAGGCTGTTTCTACTTCTAAAGCGACTCTCGGCCCCTACAGCTAAAACACCATCTGGTATCCAGTCAAGGCTCATGGGTGATGGAAGTGACTGGACCAGAGCTGTGTTGTCATGGAGATGCCTGCAGAGAGACCTGATGATGAGAAGCGACTGTACCTTGAGCCTGGGCCTaccagggaggaagaggaagatggaggaagagagtggtGTTGAGGGATCAACTTGTAACGGGCCAAATGGAACACAGAAGCTGGGgctagggggagagagacgagAATTAGGACTAAGCAAGGATCACATTTCATCAACAGAAGACTCTGGAAGTGTAAACTGTGTTGCAGGGGACAAAGATGAAGAGAACCGTATAGAAGGAAGCCGTGACAGAAAGACATCCACAGTGTCTTTCAGAGTGAACTGTCGGTGCAGTGGGGCCCTGTCCAGACTTTTCTCTCCCCAGGATCTGAGTAGGATCATTGGAACAGCAGCGAGCAGACAGCTGGGTTGGAGAGTGGACCTGAGGAAACCAGATCTGGAGGTGAATGTGTATATGAGTGATGACCACTGTGTCCTCGGGATACCTCTCCTCAGGCTTCCTTTAGCCAACCGGAGTTATATGAAGACTACTGGGCTGAGATCCACTATAGCCTGGGCCATGGCCTCTCTGTCAGACATCAAGcCTGGCTCTTGTGTGATAGACCCGATGTGTGGAGTGGGAACTATTCTACTGGAGGCTGCACATGAATATCAGGATGCCTTTTTCCTGGGTCTGGACATTGACGAGTCTCAGTTGGTGAAAGCTGATCAGAATGTGGAGTTTGCAAAGTTTGGGGATAGGGTGCAGCTGCTGCAGGCATCATCCAAGGAGATTCCACTGCCTTCCTGTAGTGTGGATGTCGTTGTCTGTGACGTCCCTTTTGGGAAGAAGTTTGGCACCAAGACTGACATGGCTGCCTCTCTTCCAGTGATtgtgagagagatggaaagAGTTCTCCGTGTGGGTGGGACCCTGGTTTTGCTGCTTAGTCCCCAGCTCTCCtgcctgctgaagaaaagcatgaCCCCCAGACCAGTAACCTCACACAcccagggagaggggactggggtGGGATTAGGAGGGGATGTGGACCCCTCCCATACCCCAAGCCTTTTCCCCTCACTGCAGCCCCTAAGCTACCACAGAGTGAGCCTGGGAGCTATAGATGCTCTTATTCACAAGTATGTCAAGATACTGACTGCTACTACCACACTCAGTGGAcctcactgtatacacacactcaACCCCTGCATAGTGGAGCCCGAGTGAGACTTTTAGGAGATGGATACACTGGATTCAagagacattcacacacacttcAAAGACAATACCACCTGTGAAACACAGAACATCACTGTATCAATTTGGCATGGTTAGAATTTTACCGACGTGTACTGTACTACCACAAAATGAAGAGAAAAGCTTAAATGTCATAGAATGTCAAACCCAAA
>XM_021613311.2
TATTTCCGTTTCCGTGTAAACAAAACAACATGGCAGCCCACGTAGGTACTGGCATGGAGATTTCGAGTTTTACTTTTATAGCTTAGCATTTCTAAACTCGACAGTATGAACGACTCAAATTGTCAGTGTGCTGCTCTAAAGTTATATTGCACCGCAGGGAACGGCATGGAGCCTTTCCTGATTCAGGAGGTGAAGACCAAACTTGCAGCCAAAGATGTGGATCACATCCCTGGAAAAGTGTTCTTCACCACCTCGTTTGAAATAAAGCAAGTGAGGGAGCTGAAATCTGCAGAGAGGCTGTTTCTACTTCTAAAGCGACTCTCGGCCCCTACAGCTAAAACACCATCTGGTATCCAGTCAAGGCTCATGGGTGATGGAAGTGACTGGACCAGAGCTGTGTTGTCATGGAGATGCCTGCAGAGAGACCTGATGATGAGAAGCGACTGTACCTTGAGCCTGGGCCTaccagggaggaagaggaagatggaggaagagagtggtGTTGAGGGATCAACTTGTAACGGGCCAAATGGAACACAGAAGCTGGGgctagggggagagagacgagAATTAGGACTAAGCAAGGATCACATTTCATCAACAGAAGACTCTGGAAGTGTAAACTGTGTTGCAGGGGACAAAGATGAAGAGAACCGTATAGAAGGAAGCCGTGACAGAAAGACATCCACAGTGTCTTTCAGAGTGAACTGTCGGTGCAGTGGGGCCCTGTCCAGACTTTTCTCTCCCCAGGATCTGAGTAGGATCATTGGAACAGCAGCGAGCAGACAGCTGGGTTGGAGAGTGGACCTGAGGAAACCAGATCTGGAGGTGAATGTGTATATGAGTGATGACCACTGTGTCCTCGGGATACCTCTCCTCAGGCTTCCTTTAGCCAACCGGAGTTATATGAAGACTACTGGGCTGAGATCCACTATAGCCTGGGCCATGGCCTCTCTGTCAGACATCAAGcCTGGCTCTTGTGTGATAGACCCGATGTGTGGAGTGGGAACTATTCTACTGGAGGCTGCACATGAATATCAGGATGCCTTTTTCCTGGGTCTGGACATTGACGAGTCTCAGTTGGTGAAAGCTGATCAGAATGTGGAGTTTGCAAAGTTTGGGGATAGGGTGCAGCTGCTGCAGGCATCATCCAAGGAGATTCCACTGCCTTCCTGTAGTGTGGATGTCGTTGTCTGTGACGTCCCTTTTGGGAAGAAGTTTGGCACCAAGACTGACATGGCTGCCTCTCTTCCAGTGATtgtgagagagatggaaagAGTTCTCCGTGTGGGTGGGACCCTGGTTTTGCTGCTTAGTCCCCAGCTCTCCtgcctgctgaagaaaagcatgaCCCCCAGACCAGTAACCTCACACAcccagggagaggggactggggtGGGATTAGGAGGGGATGTGGACCCCTCCCATACCCCAAGCCTTTTCCCCTCACTGCAGCCCCTAAGCTACCACAGAGTGAGCCTGGGAGCTATAGATGCTCTTATTCACAAGTATGTCAAGATACTGACTGCTACTACCACACTCAGTGGAcctcactgtatacacacactcaACCCCTGCATAGTGGAGCCCGAGTGAGACTTTTAGGAGATGGATACACTGGATTCAagagacattcacacacacttcAAAGACAATACCACCTGTGAAACACAGAACATCACTGTATCAATTTGGCATGGTTAGAATTTTACCGACGTGTACTGTACTACCACAAAATGAAGAGAAAAGCTTAAATGTCATAGAATGTCAAACCCAAA
>XM_036986578.1
GTATTTCCGTTTCCGTGTAAACAAAACAACATGGCAGCCCACGTAGGTACTGGCATGGAGATTTCGAGTTTTACTTTTATAGCTTAGCATTTCTAAACTCGACAGTATGAACGACTCAAATTGTCAGTGTGCTGCTCTAAAGTTATATTGCACCGCAGGGAACGGCATGGAGCCTTTCCTGATTCAGGAGGTGAAGACCAAACTTGCAGCCAAAGATGTGGATCACATCCCTGGAAAAGTGTTCTTCACCACCTCGTTTGAAATAAAGCAAGTGAGGGAGCTGAAATCTGCAGAGAGGCTGTTTCTACTTCTAAAGCGACTCTCGGCCCCTACAGTCAAGGCTCATGGGTGATGGAAGTGACTGGACCAGAGCTGTGTTGTCATGGAGATGCCTGCAGAGAGACCTGATGATGAGAAGCGACTGTACCTTGAGCCTGGGCCTaccagggaggaagaggaagatggaggaagagagtggtGTTGAGGGATCAACTTGTAACGGGCCAAATGGAACACAGAAGCTGGGgctagggggagagagacgagAATTAGGACTAAGCAAGGATCACATTTCATCAACAGAAGACTCTGGAAGTGTAAACTGTGTTGCAGGGGACAAAGATGAAGAGAACCGTATAGAAGGAAGCCGTGACAGAAAGACATCCACAGTGTCTTTCAGAGTGAACTGTCGGTGCAGTGGGGCCCTGTCCAGACTTTTCTCTCCCCAGGATCTGAGTAGGATCATTGGAACAGCAGCGAGCAGACAGCTGGGTTGGAGAGTGGACCTGAGGAAACCAGATCTGGAGGTGAATGTGTATATGAGTGATGACCACTGTGTCCTCGGGATACCTCTCCTCAGGCTTCCTTTAGCCAACCGGAGTTATATGAAGACTACTGGGCTGAGATCCACTATAGCCTGGGCCATGGCCTCTCTGTCAGACATCAAGcCTGGCTCTTGTGTGATAGACCCGATGTGTGGAGTGGGAACTATTCTACTGGAGGCTGCACATGAATATCAGGATGCCTTTTTCCTGGGTCTGGACATTGACGAGTCTCAGTTGGTGAAAGCTGATCAGAATGTGGAGTTTGCAAAGTTTGGGGATAGGGTGCAGCTGCTGCAGGCATCATCCAAGGAGATTCCACTGCCTTCCTGTAGTGTGGATGTCGTTGTCTGTGACGTCCCTTTTGGGAAGAAGTTTGGCACCAAGACTGACATGGCTGCCTCTCTTCCAGTGATtgtgagagagatggaaagAGTTCTCCGTGTGGGTGGGACCCTGGTTTTGCTGCTTAGTCCCCAGCTCTCCtgcctgctgaagaaaagcatgaCCCCCAGACCAGTAACCTCACACAcccagggagaggggactggggtGGGATTAGGAGGGGATGTGGACCCCTCCCATACCCCAAGCCTTTTCCCCTCACTGCAGCCCCTAAGCTACCACAGAGTGAGCCTGGGAGCTATAGATGCTCTTATTCACAAGTATGTCAAGATACTGACTGCTACTACCACACTCAGTGGAcctcactgtatacacacactcaACCCCTGCATAGTGGAGCCCGAGTGAGACTTTTAGGAGATGGATACACTGGATTCAagagacattcacacacacttcAAAGACAATACCACCTGTGAAACACAGAACATCACTGTATCAATTTGGCATGGTTAGAATTTTACCGACGTGTACTGTACTACCACAAAATGAAGAGAAAAGCTTAAATGTCATAGAATGTCAAACCCAAA
>XM_036986571.1
cctccactggagCTAAGGGAACGGCATGGAGCCTTTCCTGATTCAGGAGGTGAAGACCAAACTTGCAGCCAAAGATGTGGATCACATCCCTGGAAAAGTGTTCTTCACCACCTCGTTTGAAATAAAGCAAGTGAGGGAGCTGAAATCTGCAGAGAGGCTGTTTCTACTTCTAAAGCGACTCTCGGCCCCTACAGCTAAAACACCATCTGGTATCCAGTCAAGGCTCATGGGTGATGGAAGTGACTGGACCAGAGCTGTGTTGTCATGGAGATGCCTGCAGAGAGACCTGATGATGAGAAGCGACTGTACCTTGAGCCTGGGCCTaccagggaggaagaggaagatggaggaagagagtggtGTTGAGGGATCAACTTGTAACGGGCCAAATGGAACACAGAAGCTGGGgctagggggagagagacgagAATTAGGACTAAGCAAGGATCACATTTCATCAACAGAAGACTCTGGAAGTGTAAACTGTGTTGCAGGGGACAAAGATGAAGAGAACCGTATAGAAGGAAGCCGTGACAGAAAGACATCCACAGTGTCTTTCAGAGTGAACTGTCGGTGCAGTGGGGCCCTGTCCAGACTTTTCTCTCCCCAGGATCTGAGTAGGATCATTGGAACAGCAGCGAGCAGACAGCTGGGTTGGAGAGTGGACCTGAGGAAACCAGATCTGGAGGTGAATGTGTATATGAGTGATGACCACTGTGTCCTCGGGATACCTCTCCTCAGGCTTCCTTTAGCCAACCGGAGTTATATGAAGACTACTGGGCTGAGATCCACTATAGCCTGGGCCATGGCCTCTCTGTCAGACATCAAGcCTGGCTCTTGTGTGATAGACCCGATGTGTGGAGTGGGAACTATTCTACTGGAGGCTGCACATGAATATCAGGATGCCTTTTTCCTGGGTCTGGACATTGACGAGTCTCAGTTGGTGAAAGCTGATCAGAATGTGGAGTTTGCAAAGTTTGGGGATAGGGTGCAGCTGCTGCAGGCATCATCCAAGGAGATTCCACTGCCTTCCTGTAGTGTGGATGTCGTTGTCTGTGACGTCCCTTTTGGGAAGAAGTTTGGCACCAAGACTGACATGGCTGCCTCTCTTCCAGTGATtgtgagagagatggaaagAGTTCTCCGTGTGGGTGGGACCCTGGTTTTGCTGCTTAGTCCCCAGCTCTCCtgcctgctgaagaaaagcatgaCCCCCAGACCAGTAACCTCACACAcccagggagaggggactggggtGGGATTAGGAGGGGATGTGGACCCCTCCCATACCCCAAGCCTTTTCCCCTCACTGCAGCCCCTAAGCTACCACAGAGTGAGCCTGGGAGCTATAGATGCTCTTATTCACAAGTATGTCAAGATACTGACTGCTACTACCACACTCAGTGGAcctcactgtatacacacactcaACCCCTGCATAGTGGAGCCCGAGTGAGACTTTTAGGAGATGGATACACTGGATTCAagagacattcacacacacttcAAAGACAATACCACCTGTGAAACACAGAACATCACTGTATCAATTTGGCATGGTTAGAATTTTACCGACGTGTACTGTACTACCACAAAATGAAGAGAAAAGCTTAAATGTCATAGAATGTCAAACCCAAA

Function

symbol description
thumpd2 Predicted to enable tRNA (guanine) methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation. Orthologous to human THUMPD2 (THUMP domain containing 2).

NR:

description
THUMP domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986568.1 False 1652 mRNA 0.50 11 80364027 80370499
XM_021613311.2 False 1778 mRNA 0.49 10 80364027 80370513
XM_036986578.1 False 1756 mRNA 0.49 10 80364027 80370514
XM_036986571.1 True 1638 mRNA 0.50 11 80364027 80376924

Neighbor

gene id symbol gene type direction distance location
LOC110530293 LOC106577155 coding downstream 14184 80266640 ~ 80349843 (-)
LOC110530266 LOC106577153 coding downstream 127597 80221016 ~ 80236430 (-)
LOC110530258 LOC106577097 coding downstream 225575 80072570 ~ 80138452 (-)
LOC110530250 LOC106577100 coding downstream 305675 80035286 ~ 80058352 (-)
mtrf1l mtrf1l coding downstream 417091 79935822 ~ 79946936 (-)
slc8a1b LOC106577160 coding upstream 32553 80409477 ~ 80647140 (-)
LOC110530369 LOC106577163 coding upstream 526413 80903337 ~ 80905779 (-)
LOC118965579 LOC106577163 coding upstream 543024 80919948 ~ 80922357 (-)
nphp1 LOC106577164 coding upstream 563291 80940215 ~ 80966643 (-)
LOC110530390 LOC106577181 coding upstream 599068 80975992 ~ 80991714 (-)
G90799 NA non-coding downstream 7670 80356137 ~ 80356357 (-)
G90798 NA non-coding downstream 7895 80355908 ~ 80356132 (-)
G90744 NA non-coding downstream 126259 80236784 ~ 80237768 (-)
G90443 NA non-coding downstream 148459 80214799 ~ 80215568 (-)
G90439 NA non-coding downstream 152799 80211009 ~ 80211228 (-)
G90839 NA non-coding upstream 48259 80425183 ~ 80426740 (-)
G90847 NA non-coding upstream 70007 80446931 ~ 80447829 (-)
G90994 NA non-coding upstream 287444 80664368 ~ 80754269 (-)
G91031 NA non-coding upstream 350376 80727300 ~ 80727679 (-)
G91067 NA non-coding upstream 390633 80767557 ~ 80768021 (-)
G90382 NA other downstream 221870 80141559 ~ 80142157 (-)
LOC110530200 NA other downstream 466187 79862081 ~ 79917875 (-)
G90190 NA other downstream 475847 79886675 ~ 79888180 (-)
G90081 NA other downstream 828455 79534758 ~ 79535572 (-)
G89418 NA other downstream 1313536 79049811 ~ 79050491 (-)
G91941 NA other upstream 650984 81027908 ~ 81028612 (-)
G91943 LOC106577167 other upstream 653908 81030832 ~ 81031358 (-)
G91947 NA other upstream 658651 81035575 ~ 81036138 (-)
LOC110532756 LOC106577174 other upstream 803900 81175845 ~ 81449471 (-)

Expression


Co-expression Network