LOC110530352 (LOC106577159)


Basic Information

Item Value
gene id LOC110530352
gene name LOC106577159
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80383566 ~ 80386413 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986600.1
ATTTAAAAGAAAACAGGCAGGAATGCAAGTAGCAACTCGCCAGTGAATTTACAACTTTTTAAGTCACACTTTTCCCCATGTAATGATTTGCATGATATTGATGAAATTAAGCTTGGTTTGTTCTAAGGCTTTTTTCTCATCGTGcatttacatcaacaacacacTCGCCTGCCCACCCCCAGATATCCTGACGTTCATCATGGGGCAGTTGTTGGCCTCAGAAAAGGAGCAGTCGGAGGCTCAGGTTGCTATTGGCTCTCTGCTCTACTCCGCCATGTTGGAGGCCGGTGCTCTGCCTGATGTTGCCGTCGACCACTATCTGCTAGCTAATCCAGAGAGCCTAGACTCCAGGGCCCACCTACAGGACCACCTCCGCCAGCTGCAGGGGCACGTAGGTAACCGGGCGCCcacctacctgaaggagctgatCAGCCGCCTGGTCGCTTTCTCTGACGAGCCCAAGGTTGCAGGCCTGGTGGGCTTGgtggtctccatggtgatggaGACGGCATACGCCTCGTCCAGGGGGTCAGTGAGGTCAAGGGGTTGCCAAGTCGAGGAACGGCGAGCGGAGCTCCAGGACGTTATGGAGGAGTACCTCAAGCGCTGCCGGATGCACTTGAAGGATGAGCAGAAGCTGAGAGAAGACACCCAGCGTCTGGAGGGCCAGCTGAGCTACTTGCTGACCCAGCTGAAGAACACCATGCTCAGGGAAGGCCCCAGCTCCAAGGCCCTGAAGCACTGGGCCAGCGGCGCCGCCTTTCACACGCAGATGCTGCTGCACCTGACCAGGCTAGAGCAGAGAGGAGACCCGCTGGTCGTCCAGGCTGCAATGGAGCAGTACCAAGAGGACTTCAGAGAGATTCTACCTGCGTACAGATGCTACAAAGCCAGTACGGTGACTGTGATAAAGTGTAGGGGAGGGCTGCAGACCGGGGAGGATCCTCTGACTGAGGGGAGTGTGACTGGGTTCACTGTGGTGGATAAAGAGTTAGGGAAGAGTGTGAGTGTACCCCTACCTGAGGACGCTCCCCCTGGCATTGTCCTGATCACTTCAGATATGTGTGCTCAAGCCTATTTAGAGCGACTGTTCTCTCCACAAGGCCCCATTGCAGACCTGGAGAGGTACTTTCTCAACAGCAGAGAGAGTCTACGCATGAAGTTGATGGTACAAGAACCAACGGACCCCAACGAGAGGCTGAGCATAGTGGAAACAGAACCCCTAGACAGAAGATAGCACATGTTCATGTTGACTTTCATACAGGCAAAGGCAAGATGCAAAATCCACAGAACTGAACGAACACTCTTGACTAAATGTGCATTTATTGTATTGTATGTATGATCAAATGTTGAATAATAATCTGGTTTATTCAATGCTAA
>XM_021613346.2
CCTAGTTTCTCTCCCTGTTGTCTTGGATTTAGTGCTGCAGTGTAGAAAATCAGGCCACTGTCTGCCATATTAGCTGGCTGCTGTATACAACGGCTTTTTTCTCATCGTGcatttacatcaacaacacacTCGCCTGCCCACCCCCAGATATCCTGACGTTCATCATGGGGCAGTTGTTGGCCTCAGAAAAGGAGCAGTCGGAGGCTCAGGTTGCTATTGGCTCTCTGCTCTACTCCGCCATGTTGGAGGCCGGTGCTCTGCCTGATGTTGCCGTCGACCACTATCTGCTAGCTAATCCAGAGAGCCTAGACTCCAGGGCCCACCTACAGGACCACCTCCGCCAGCTGCAGGGGCACGTAGGTAACCGGGCGCCcacctacctgaaggagctgatCAGCCGCCTGGTCGCTTTCTCTGACGAGCCCAAGGTTGCAGGCCTGGTGGGCTTGgtggtctccatggtgatggaGACGGCATACGCCTCGTCCAGGGGGTCAGTGAGGTCAAGGGGTTGCCAAGTCGAGGAACGGCGAGCGGAGCTCCAGGACGTTATGGAGGAGTACCTCAAGCGCTGCCGGATGCACTTGAAGGATGAGCAGAAGCTGAGAGAAGACACCCAGCGTCTGGAGGGCCAGCTGAGCTACTTGCTGACCCAGCTGAAGAACACCATGCTCAGGGAAGGCCCCAGCTCCAAGGCCCTGAAGCACTGGGCCAGCGGCGCCGCCTTTCACACGCAGATGCTGCTGCACCTGACCAGGCTAGAGCAGAGAGGAGACCCGCTGGTCGTCCAGGCTGCAATGGAGCAGTACCAAGAGGACTTCAGAGAGATTCTACCTGCGTACAGATGCTACAAAGCCAGTACGGTGACTGTGATAAAGTGTAGGGGAGGGCTGCAGACCGGGGAGGATCCTCTGACTGAGGGGAGTGTGACTGGGTTCACTGTGGTGGATAAAGAGTTAGGGAAGAGTGTGAGTGTACCCCTACCTGAGGACGCTCCCCCTGGCATTGTCCTGATCACTTCAGATATGTGTGCTCAAGCCTATTTAGAGCGACTGTTCTCTCCACAAGGCCCCATTGCAGACCTGGAGAGGTACTTTCTCAACAGCAGAGAGAGTCTACGCATGAAGTTGATGGTACAAGAACCAACGGACCCCAACGAGAGGCTGAGCATAGTGGAAACAGAACCCCTAGACAGAAGATAGCACATGTTCATGTTGACTTTCATACAGGCAAAGGCAAGATGCAAAATCCACAGAACTGAACGAACACTCTTGACTAAATGTGCATTTATTGTATTGTATGTATGATCAAATGTTGAATAATAATCTGGTTTATTCAATGCTAA
>XM_021613337.2
ACACACTCCCCGGTAAATGCCTTACAGTAAGGGAAGAGCCCAAAGCTAAACGAACGCAGTTGATATGTGAAGTGTTGTTCGATTATTTGTAACGTTTTTTTATGGCATGGTTATTCATACTGAGAGAATGGCGATATGATGAAATCAACAACTTCCTTTCTGTGCACTGCTTTTTTCTCATCGTGcatttacatcaacaacacacTCGCCTGCCCACCCCCAGATATCCTGACGTTCATCATGGGGCAGTTGTTGGCCTCAGAAAAGGAGCAGTCGGAGGCTCAGGTTGCTATTGGCTCTCTGCTCTACTCCGCCATGTTGGAGGCCGGTGCTCTGCCTGATGTTGCCGTCGACCACTATCTGCTAGCTAATCCAGAGAGCCTAGACTCCAGGGCCCACCTACAGGACCACCTCCGCCAGCTGCAGGGGCACGTAGGTAACCGGGCGCCcacctacctgaaggagctgatCAGCCGCCTGGTCGCTTTCTCTGACGAGCCCAAGGTTGCAGGCCTGGTGGGCTTGgtggtctccatggtgatggaGACGGCATACGCCTCGTCCAGGGGGTCAGTGAGGTCAAGGGGTTGCCAAGTCGAGGAACGGCGAGCGGAGCTCCAGGACGTTATGGAGGAGTACCTCAAGCGCTGCCGGATGCACTTGAAGGATGAGCAGAAGCTGAGAGAAGACACCCAGCGTCTGGAGGGCCAGCTGAGCTACTTGCTGACCCAGCTGAAGAACACCATGCTCAGGGAAGGCCCCAGCTCCAAGGCCCTGAAGCACTGGGCCAGCGGCGCCGCCTTTCACACGCAGATGCTGCTGCACCTGACCAGGCTAGAGCAGAGAGGAGACCCGCTGGTCGTCCAGGCTGCAATGGAGCAGTACCAAGAGGACTTCAGAGAGATTCTACCTGCGTACAGATGCTACAAAGCCAGTACGGTGACTGTGATAAAGTGTAGGGGAGGGCTGCAGACCGGGGAGGATCCTCTGACTGAGGGGAGTGTGACTGGGTTCACTGTGGTGGATAAAGAGTTAGGGAAGAGTGTGAGTGTACCCCTACCTGAGGACGCTCCCCCTGGCATTGTCCTGATCACTTCAGATATGTGTGCTCAAGCCTATTTAGAGCGACTGTTCTCTCCACAAGGCCCCATTGCAGACCTGGAGAGGTACTTTCTCAACAGCAGAGAGAGTCTACGCATGAAGTTGATGGTACAAGAACCAACGGACCCCAACGAGAGGCTGAGCATAGTGGAAACAGAACCCCTAGACAGAAGATAGCACATGTTCATGTTGACTTTCATACAGGCAAAGGCAAGATGCAAAATCCACAGAACTGAACGAACACTCTTGACTAAATGTGCATTTATTGTATTGTATGTATGATCAAATGTTGAATAATAATCTGGTTTATTCAATGCTAA

Function

NR:

description
uncharacterized protein LOC110530352 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986600.1 False 1380 mRNA 0.52 2 80383566 80386413
XM_021613346.2 False 1345 mRNA 0.54 2 80384541 80386413
XM_021613337.2 True 1421 mRNA 0.53 2 80384640 80386413

Neighbor

gene id symbol gene type direction distance location
LOC110530346 LOC106577158 coding upstream 19540 80359816 ~ 80364026 (+)
arhgef33 LOC106577154 coding upstream 119832 80248099 ~ 80267460 (+)
slc29a1a LOC106577101 coding upstream 349789 79956334 ~ 80033777 (+)
vip LOC106577104 coding upstream 454657 79924696 ~ 79928909 (+)
bcl2l11 bcl2l11 coding upstream 601319 79766233 ~ 79782247 (+)
LOC110532748 LOC106577167 coding downstream 628292 81014705 ~ 81056605 (+)
LOC110530417 LOC106577168 coding downstream 670582 81056995 ~ 81078956 (+)
zcchc24 LOC106577169 coding downstream 697621 81084034 ~ 81175099 (+)
LOC118966718 NA coding downstream 945133 81331546 ~ 81332112 (+)
ipyr ipyr coding downstream 1233807 81620220 ~ 81635022 (+)
G90528 NA non-coding upstream 25966 80357379 ~ 80357600 (+)
G90527 NA non-coding upstream 27842 80355319 ~ 80355724 (+)
G90446 NA non-coding upstream 165514 80217712 ~ 80218052 (+)
G90055 NA non-coding upstream 205491 80177604 ~ 80178075 (+)
G90542 NA non-coding downstream 17102 80403515 ~ 80408049 (+)
G90556 NA non-coding downstream 50469 80436882 ~ 80439031 (+)
G90671 NA non-coding downstream 267492 80653905 ~ 80757902 (+)
G90724 NA non-coding downstream 342110 80728523 ~ 80754315 (+)
G91051 NA non-coding downstream 371582 80757995 ~ 80758220 (+)
acoxl acoxl other upstream 618207 79720751 ~ 79765359 (+)
G89667 NA other upstream 833915 79549017 ~ 79549651 (+)
G87159 NA other upstream 2813096 77570015 ~ 77570470 (+)
G86614 NA other upstream 3259139 77123935 ~ 77124427 (+)
G86019 NA other upstream 3747630 76631745 ~ 76635936 (+)
G91064 NA other downstream 378701 80765114 ~ 80766155 (+)
G91541 LOC106591086 other downstream 1151918 81538331 ~ 81541400 (+)
G91779 NA other downstream 1491126 81877539 ~ 81879178 (+)
LOC110530526 LOC106577204 other downstream 1519719 81906132 ~ 81907399 (+)
LOC110530572 LOC106577202 other downstream 1742231 82128619 ~ 82163498 (+)

Expression


Co-expression Network