LOC110530369 (LOC106577163)


Basic Information

Item Value
gene id LOC110530369
gene name LOC106577163
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 80903337 ~ 80905779 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613366.2
gtgTGGGTGGGTTAAGGAAGCAGGGCTTTAAAGGCAGAAGTGTTTAGGTCACAGGTCTCACTTTAGGGAGAACTGTGTTGGGCACACTCCCACATCAACAAAACGCCAACACACAGGTAGACCTTGACACTTTGGGAATATGGCTTCCAGCGCCTCCACTAACCCTCTGCCCAGTGGCACCAGTGTGTTCACCACTGTTCCAGACCTCTTCTTCATCCCTGAGTTTataTTCGGAGGTCTGGTGTGGACTCTGGTGGCCTCCACAAAAGTGCTGATTGCGAACCCTCAGGGCTGGGTgatgtttgtctctgtgttctgCTTCATCTTCACTACCCTGTGGTTCCTCATCTTCATCAGTGGAGCCAATAAGAGCAGCATCTGGCCTACACTGgaTGTTGTGTATCATTCCCTTGCAGCCTTCTTCTACCTCAGTGCAGCAGTGGTACAGGCCTACATCACCATTAGTCTGAAATCAGTTACCAGTACTTTCTTCAAAGAATACCAATTGGATATTGCTGCAGTGGTGATGTGTTATGTGGTGACTCTGCTCTACACCCTCCATGCCATCTTCTCTACGATGAGATGGAAGAGTTCCTCATGAAGACCAGCATCCACAAGACAACAGACAAAGGGACAACAGACATTAGAGAAGGCTTTGATATGACATCAATTGTAATCTATCTTTATTTCTACATTATTTTCTTCCTGCAAATACCGTAAACCAATTTGGAGTGAAATGCATATACAATATAAAtaaaaagataaataaatatattttatacttaa

Function

NR:

description
myelin and lymphocyte protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613366.2 True 786 mRNA 0.44 4 80903337 80905779

Neighbor

gene id symbol gene type direction distance location
slc8a1b LOC106577160 coding downstream 256197 80409477 ~ 80647140 (-)
thumpd2 thumpd2 coding downstream 526413 80364027 ~ 80376924 (-)
LOC110530293 LOC106577155 coding downstream 553494 80266640 ~ 80349843 (-)
LOC110530266 LOC106577153 coding downstream 666907 80221016 ~ 80236430 (-)
LOC110530258 LOC106577097 coding downstream 764885 80072570 ~ 80138452 (-)
LOC118965579 LOC106577163 coding upstream 14169 80919948 ~ 80922357 (-)
nphp1 LOC106577164 coding upstream 34436 80940215 ~ 80966643 (-)
LOC110530390 LOC106577181 coding upstream 70213 80975992 ~ 80991714 (-)
ppifa LOC106577170 coding upstream 263023 81168802 ~ 81174063 (-)
LOC110532756 LOC106577174 coding upstream 270066 81175845 ~ 81449471 (-)
G91198 NA non-coding downstream 41315 80861804 ~ 80862022 (-)
G91169 NA non-coding downstream 61286 80841760 ~ 80842051 (-)
G91160 NA non-coding downstream 66336 80836784 ~ 80837001 (-)
G91147 NA non-coding downstream 76400 80826728 ~ 80826937 (-)
G91142 NA non-coding downstream 81185 80821945 ~ 80822152 (-)
G91928 NA non-coding upstream 108754 81014533 ~ 81015155 (-)
G91930 NA non-coding upstream 110357 81016136 ~ 81016356 (-)
G91932 NA non-coding upstream 113041 81018820 ~ 81019368 (-)
G91939 NA non-coding upstream 117472 81023251 ~ 81023528 (-)
G91942 NA non-coding upstream 122895 81028674 ~ 81029019 (-)
G90382 NA other downstream 761180 80141559 ~ 80142157 (-)
LOC110530200 NA other downstream 1005497 79862081 ~ 79917875 (-)
G90190 NA other downstream 1015157 79886675 ~ 79888180 (-)
G90081 NA other downstream 1367765 79534758 ~ 79535572 (-)
G89418 NA other downstream 1852846 79049811 ~ 79050491 (-)
G91941 NA other upstream 122129 81027908 ~ 81028612 (-)
G91943 LOC106577167 other upstream 125053 81030832 ~ 81031358 (-)
G91947 NA other upstream 129796 81035575 ~ 81036138 (-)

Expression


Co-expression Network