zcchc24 (LOC106577169)


Basic Information

Item Value
gene id zcchc24
gene name LOC106577169
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81084034 ~ 81175099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986774.1
GCTCTGGGGTGGCTGCCCCACTGCAAATAAAGGGAGATAACGGGCCGTGAGTAGCGGCTGAAAACGTTTTATACTGACATGTTAGAGCAATGACTTTTGCGTAACCGCGTAAAATCTGGGACTAGGCTCCCAGCACGAGGATGATATAGGGTTCTTACGGGAAGAGGAACAAGAAACGATTGCCACGGCCCGGTGGGAAAAAGAAAACGGCGAATCCGTTGaagtttagaaagagagagtgagcgacAGTGAGCAGGATTCTCAAAATTGAAAGCAATCCAAAAACATAGCTGCGGTGGAAGAGCGAGTGTACCCATTTGAAAGATGAGCTTGATGTCTGCCATAGACACCAGTGCCTCCGTGTACCAGCCTGCACAGCTACTGAATTGGGTATACCTCTCTTTGCAAGACACTCACCAGACCAGCGCTTTTGACGCCTTTAGACCCGAACCCAACTCTTCCCACCCGGAGCTGAACTACTGCAAGACTCCTGCGGCGGACCTGAGCTCGTCCCTAAACTCCAACTATCTCAACAACTTTTTTCAGCTCCAGCGGAATGAGGCGTTGAATAACAGCGTGTATAAGAATGTCTCGCCATACGGCTCGCTCAACAACATCGTTGATGGACTCAACACCCTGACAGACCACTTCTCCgacctttccctctcctcagaGTCCCGCAAGCCAAGTAAGAGACCCCCACCCAACTACCTGTGCCACCTCTGCTTCAACAAGGGCCACTACATCAAAGACTGCCCCCAGGCAAGGCCTAAAGGCGAGGGTCTAACTCCGTACCAGGGGAAGAAGAGGTGTTTTGGAGAGTACAAATGTCCCAAGTGTAAGAGGAAGTGGATGAGTGGCAACTCCTGGGCCAACATGGGACAAGAATGTATCAAGTGCCACATCAACGTCTACCCACACAAGCAGCGTCCATTGGAGAAGCCTGATGGCCTGGACGTCTCAGACCAGAGTAAGGAGCACCCTCAGCACCTGTGTGAGAAATGCAAAGTCCTGGGCTACTACTGCCGACGAGTGCAATAATAccttactaacctgaaccctccAATTTCCTCAAAAAGAGAGGAACCATTTCATGTCCCTCGCCTCCTCCTCCGTCAGAGGGAAACCTAGCAACCCTCCTGTACTGCCTTCCCATTTTCCTCTTCCCGCTCCTGGGAAAGAGTGGAACCTCACTGTCCTCACCAATACTGCCTCCCTTGCCTCCCCTCCATCctttctcaccctctccccctctccacatcacctcccatcacctctccctcccctctcccctctatcacctctgcctcccctctccccatcaccccc
>XM_036986783.1
GCTCTGGGGTGGCTGCCCCACTGCAAATAAAGGGAGATAACGGGCCGTGAGTAGCGGCTGAAAACGTTTTATACTGACATGTTAGAGCAATGACTTTTGCGTAACCGCGTAAAATCTGGGACTAGGCTCCCAGCACGAGGATGATATAGGGTTCTTACGGGAAGAGGAACAAGAAACGATTGCCACGGCCCGGTGGGAAAAAGAAAACGGCGAATCCGTTGaagtttagaaagagagagtgagcgacAGTGAGCAGGATTCTCAAAATTGAAAGCAATCCAAAAACATAGCTGCGGTGGAAGAGCGAGTGTACCCATTTGAAAGATGAGCTTGATGTCTGCCATAGACACCAGTGCCTCCGTGTACCAGCCTGCACAGCTACTGAATTGGGTATACCTCTCTTTGCAAGACACTCACCAGACCAGCGCTTTTGACGCCTTTAGACCCGAACCCAACTCTTCCCACCCGGAGCTGAACTACTGCAAGACTCCTGCGGCGGACCTGAGCTCGTCCCTAAACTCCAACTATCTCAACAACTTTTTTCAGCTCCAGCGGAATGAGGCGTTGAATAACAGCGTGTATAAGAATGTCTCGCCATACGGCTCGCTCAACAACATCGTTGATGGACTCAACACCCTGACAGACCACTTCTCCgacctttccctctcctcagaGTCCCGCAAGCCAAGTAAGAGACCCCCACCCAACTACCTGTGCCACCTCTGCTTCAACAAGGGCCACTACATCAAAGACTGCCCCCAGGCAAGGCCTAAAGGCGAGGGTCTAACTCCGTACCAGGGGAAGAAGAGGTGTTTTGGAGAGTACAAATGTCCCAAGTGTAAGAGGAAGTGGATGAGTGGCAACTCCTGGGCCAACATGGGACAAGAATGTATCAAGTGCCACATCAACGTCTACCCACACAAGCAGCGTCCATTGGAGAAGCCTGATGGCCTGGACGTCTCAGACCAGAaggacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtc

Function

NR:

description
zinc finger CCHC domain-containing protein 24-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986774.1 False 1329 mRNA 0.53 4 81084034 81158425
XM_036986783.1 True 1029 mRNA 0.52 5 81084034 81175099

Neighbor

gene id symbol gene type direction distance location
LOC110530417 LOC106577168 coding upstream 5078 81056995 ~ 81078956 (+)
LOC110532748 LOC106577167 coding upstream 27429 81014705 ~ 81056605 (+)
LOC110530352 LOC106577159 coding upstream 697621 80383566 ~ 80386413 (+)
LOC110530346 LOC106577158 coding upstream 720008 80359816 ~ 80364026 (+)
arhgef33 LOC106577154 coding upstream 820300 80248099 ~ 80267460 (+)
LOC118966718 NA coding downstream 156447 81331546 ~ 81332112 (+)
ipyr ipyr coding downstream 445121 81620220 ~ 81635022 (+)
LOC110530473 LOC106577216 coding downstream 460295 81635394 ~ 81641798 (+)
tysnd1 tysnd1 coding downstream 466874 81641973 ~ 81645418 (+)
LOC110530482 LOC106577211 coding downstream 600062 81775161 ~ 81777001 (+)
G91316 NA non-coding upstream 5787 81076625 ~ 81078247 (+)
G91317 NA non-coding upstream 14562 81068763 ~ 81069472 (+)
G91313 NA non-coding upstream 47839 81035694 ~ 81036195 (+)
G91311 NA non-coding upstream 51211 81032549 ~ 81032823 (+)
G91429 NA non-coding downstream 109470 81284569 ~ 81285562 (+)
G91432 NA non-coding downstream 112174 81287273 ~ 81287590 (+)
G91435 NA non-coding downstream 115586 81290685 ~ 81290919 (+)
G91438 NA non-coding downstream 117983 81293082 ~ 81293299 (+)
G91439 NA non-coding downstream 120282 81295381 ~ 81295597 (+)
G91064 NA other upstream 317879 80765114 ~ 80766155 (+)
acoxl acoxl other upstream 1318675 79720751 ~ 79765359 (+)
G89667 NA other upstream 1534383 79549017 ~ 79549651 (+)
G87159 NA other upstream 3513564 77570015 ~ 77570470 (+)
G86614 NA other upstream 3959607 77123935 ~ 77124427 (+)
G91541 LOC106591086 other downstream 363232 81538331 ~ 81541400 (+)
G91779 NA other downstream 702440 81877539 ~ 81879178 (+)
LOC110530526 LOC106577204 other downstream 731033 81906132 ~ 81907399 (+)
LOC110530572 LOC106577202 other downstream 953545 82128619 ~ 82163498 (+)
G92511 NA other downstream 967025 82142124 ~ 82142587 (+)

Expression


Co-expression Network