LOC118965609


Basic Information

Item Value
gene id LOC118965609
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81465550 ~ 81532357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053019.1
gctgcatggccttcatcaggaagtacaaaaaaaaatacaatgtcCTCACTTGAACAGCTTTTCCAATTAGCCCTAattggaagagggagtggttacaaaATTGATTAGACACACCTAGTAAGaaatactatacacattaaaaggtgaaatactgtagctaGGTTATCATGCAAATACAACTCCAAGCTAGAAGTATCAGAACACTTAGAAAGGTAGTTgtaaccttaaatatgactgggagaagtgtcaagaataagaaagcaatatattctatagtacactagaacacagcaaaacatgaacaacaacagtctAAACATAGCTGAGGGCAATTGAACAAAATGTTCACAagatgacagcaaatggacccatcacgaccctacaggaaggGTCATCATTGCAGATGGGAAGGAGTTTTTTATTTCCAGTGTTTGTAATACCTGGACATttacACCCGCAGGTTTTCCGGAGTGCAGCCCGTCGTGGTTTCCTGTTGGACTTGCCAAGTGCAGTATTTACGGAAACTGTTGCCGGGCAAAATGTTCCTAACAGGGTTCCGTCTGCGGAACACTGACTGAACACCCTAAAGGTCAGGGTAGGGTCACCCAGAACAGGGACTGCCTCGCACACCAGTCAGTGCATGGTGGGTGGGACCATCTTCTTTTTTTATCTCACAGACTCTCGGCAACTTGACTGGAACACTCCTGGGTACACTCAACATGGCCACCGGTCCACCCATCAAGGAAGGTTGACCTGAATGGGAACTGAGAACTGATCGTCAATCCCACCTCAGACCTCAAAACAGTATGCCTAAAAGCACCAGCAGGTGGCAGTATTCACAATGAATTCCCCTGCTGTATAGGGAGGCCATCCCAATCCTggagtctctctttctctttctctctttctctttttctctctctctgtctctgtcctctttcaATGAATCCTCACACTCTTTGAGggccctcctctacccctcctcagCCCTCTCACCATCCTAAAGGATTAACACTCACTTGGGTCGTTGGAGGACGATTTGGGTCACGGGAGAACAGTACATTTCTTTTTTGGGTCTCAAACTGAGTGTGCAACATTATGTTAATATAAGCTTCATTTTGAAAGCGAATGTTTTTGTAAAAACAAAAGAAGGTTATTAAGAATAGTTCTTGATAATGATCAACCACACGAATGGTGTTAGGTGTGAATCAACGTGTGGTTATTGCCCTTTATGAATCTTCTCTATCTGTGACTTCTGCTGTGAGGGAACCCTGGGCTGTCCTGTCATCTGTGTATGTCTGTCCCAGCTGTGTGATGTCATCAGAAGGAAGTTCTTCCACCAGGCCAGACACAACCTGTTTGCTCCCGTCAGGGGCCAAGGGCCAGGGGGCCGCCGTAACACACGGTAACCTGACACGCCATCAATGTCGGGGAGAAAACTGCTGGTCTCTCCCAGACAAGGGCGTTATTTATTTTCTCTGGACTTGAGGAAATTCAATTCCTCTTCCTCCTAGTCACTCAGCCTTTGCAGCCTTCAGACTGAGGCTTGTCTTGAACTCTCAGACAGAGAAAAGACCCCATTTTGAGAGACATAACAGAATGGTTTTGAGGTCAGTGAGAGAATTATAGAGTTGTATCACATTCATTTTGTTTCTTGAGCAATTTGTCATTTGATCCAATCAATGTTTCAAATGTTTCTCAGAAAGCATTGGCTGGTGCTAGGCTAGCCGcagagaggacagacacagagacgacTCTCATGATTTTATGTAATCTCAGACTTCTTACACATGCTTCCCTCACTCCAGCCAGATCTCAGGATTATTCACTTTTCTGCCTCATCAAGTCATTCTAGGATTAGAGGCGTGAGAAGGATAAATGTGCATTGCATCCCTGTAAATAATCAGAAGTCATGTAAATACTTCAGTTTGAAAACTAGCTTGTCCAAAAACGTGGTCACTTGGCAAAACGTTGCCCGGTATGGTGTAAATTGAGCCACGGGACATGGTAAGTTAAGCTACCTACACATTTTttgtactgaatgaaatattaccacaACCTCTTAAAACTAtcttatttcccaaacacaattcaacacaatcacttTTTTGTATTTTAACAATTTGAAGCATATTTTAACACAAGCTTAACTCCTAACAAACACGTTGTACTTTTTAAAACAAttttaacataggccaggccctgttgttacctcatatcccagggATAATAGCTTGTATTACACCTGGGAAAAAGACActgctcaacttgccattggctcaacttaccccaaggcaaacattttgacaatattagcccacacagttacaaggatgcactttcttGCTAGGTTTTGGACCTCATATGGAAGCTTACAGAGACCCTCTGAAGCATTGAACAATCTTTaaatgatctactttggtttagatacaagcatcacgAAACCTCTAACACAGTTAAGTAATTTGACTTGTCGAAaatctttttcattttttttttacctaagtTGCTTACCACCTTTTCCATGTGTGTTTAATAAAGATTGAGTGGTTTCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053019.1 True 2557 mRNA 0.42 3 81465550 81532357

Neighbor

gene id symbol gene type direction distance location
LOC110532756 LOC106577174 coding downstream 16079 81175845 ~ 81449471 (-)
ppifa LOC106577170 coding downstream 291487 81168802 ~ 81174063 (-)
LOC110530390 LOC106577181 coding downstream 473836 80975992 ~ 80991714 (-)
nphp1 LOC106577164 coding downstream 498907 80940215 ~ 80966643 (-)
LOC118965579 LOC106577163 coding downstream 543193 80919948 ~ 80922357 (-)
rps24 LOC106577218 coding upstream 5994 81538351 ~ 81542584 (-)
qrfpra LOC106577227 coding upstream 12868 81545225 ~ 81557378 (-)
LOC110530475 eif4ebp2 coding upstream 75121 81607478 ~ 81629726 (-)
LOC110530466 LOC106577213 coding upstream 116055 81648412 ~ 81725766 (-)
LOC110530522 LOC106577205 coding upstream 331467 81863824 ~ 81905659 (-)
G92097 NA non-coding downstream 10518 81404393 ~ 81455032 (-)
G92099 NA non-coding downstream 57568 81407286 ~ 81407982 (-)
G92089 NA non-coding downstream 70707 81371301 ~ 81394843 (-)
G92088 NA non-coding downstream 88238 81369050 ~ 81377312 (-)
G92193 NA non-coding upstream 52910 81585267 ~ 81587688 (-)
G92233 NA non-coding upstream 144920 81677277 ~ 81679005 (-)
G92176 NA non-coding upstream 246202 81778559 ~ 81784757 (-)
G92269 NA non-coding upstream 247066 81779423 ~ 81784353 (-)
G92277 NA non-coding upstream 267042 81799399 ~ 81799636 (-)
G91947 NA other downstream 429412 81035575 ~ 81036138 (-)
G91943 LOC106577167 other downstream 434192 81030832 ~ 81031358 (-)
G91941 NA other downstream 436938 81027908 ~ 81028612 (-)
G92566 NA other upstream 628050 82160407 ~ 82161743 (-)
LOC110532782 LOC106577197 other upstream 761456 82291777 ~ 82301867 (-)
LOC100301648 LOC106577193 other upstream 1417257 82949609 ~ 83267163 (-)
G94201 NA other upstream 1951699 83484056 ~ 83485937 (-)

Expression


Co-expression Network