rps24 (LOC106577218)


Basic Information

Item Value
gene id rps24
gene name LOC106577218
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81538351 ~ 81542584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613497.2
AATTTTGGTCGCACCGCTTCCATTCAGGCATTTGGTTGGCCAGCTTCGGGCCCTTCCTCCTTTTCCGCATCCCTGAGAGGCTGATGCCAAGATGAACGACACAGTAACAGTCAGAACCCGGAAGTTTATGACAAACCGGCTGCTTCAGAGGAAGCAAATGGTTGTTGATGTCCTCCATCCAGGCAAAGCCACAGTCCCTAAGACTGAGATCAGGGAGAAGCTGGCCAAAATGTACAAGACCACCCCCGATGTGGTGTTCGTCTTCGGCTTCAGGACACAGTTTGGTGGTGGCAAGACGACAGGTTTCGCCATGGTCTACGACTCTCTCGACTACGCTAAGAAGAACGAGCCCAAGCACAGACTGGCCAGGCACGGTCTCTATGAGAAGAAGAAGTCCTCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTACGAGGTACCAAGAAAGCCAGTGTGGGTGCTGCTGGCAAAAAGAAGAAATGAGGTCTGTTCCAGTGAGCCCGGAGAATCAGGGATGGTCCTCGTGCTCAAGATGTTCTTGTATATTGTCATCAAATAAAACGTTTGGAAAAGTCA
>XM_021613506.2
AATTTTGGTCGCACCGCTTCCATTCAGGCATTTGGTTGGCCAGCTTCGGGCCCTTCCTCCTTTTCCGCATCCCTGAGAGGCTGATGCCAAGATGAACGACACAGTAACAGTCAGAACCCGGAAGTTTATGACAAACCGGCTGCTTCAGAGGAAGCAAATGGTTGTTGATGTCCTCCATCCAGGCAAAGCCACAGTCCCTAAGACTGAGATCAGGGAGAAGCTGGCCAAAATGTACAAGACCACCCCCGATGTGGTGTTCGTCTTCGGCTTCAGGACACAGTTTGGTGGTGGCAAGACGACAGGTTTCGCCATGGTCTACGACTCTCTCGACTACGCTAAGAAGAACGAGCCCAAGCACAGACTGGCCAGGCACGGTCTCTATGAGAAGAAGAAGTCCTCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTACGAGGTACCAAGAAAGCCAGTGTGGGTGCTGCTGGCAAAAAGAAATGAGGTCTGTTCCAGTGAGCCCGGAGAATCAGGGATGGTCCTCGTGCTCAAGATGTTCTTGTATATTGTCATCAAATAAAACGTTTGGAAAAGTCA
>XM_021613515.2
AATTTTGGTCGCACCGCTTCCATTCAGGCATTTGGTTGGCCAGCTTCGGGCCCTTCCTCCTTTTCCGCATCCCTGAGAGGCTGATGCCAAGATGAACGACACAGTAACAGTCAGAACCCGGAAGTTTATGACAAACCGGCTGCTTCAGAGGAAGCAAATGGTTGTTGATGTCCTCCATCCAGGCAAAGCCACAGTCCCTAAGACTGAGATCAGGGAGAAGCTGGCCAAAATGTACAAGACCACCCCCGATGTGGTGTTCGTCTTCGGCTTCAGGACACAGTTTGGTGGTGGCAAGACGACAGGTTTCGCCATGGTCTACGACTCTCTCGACTACGCTAAGAAGAACGAGCCCAAGCACAGACTGGCCAGGCACGGTCTCTATGAGAAGAAGAAGTCCTCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTACGAGGTACCAAGAAAGCCAGTGTGGGTGCTGCTGGCAAAAAGTGAGCCCGGAGAATCAGGGATGGTCCTCGTGCTCAAGATGTTCTTGTATATTGTCATCAAATAAAACGTTTGGAAAAGTCA
>XM_036986845.1
AATTTTGGTCGCACCGCTTCCATTCAGGCATTTGGTTGGCCAGCTTCGGGCCCTTCCTCCTTTTCCGCATCCCTGAGAGGCTGATGCCAAGATGAACGACACAGTAACAGTCAGAACCCGGAAGTTTATGACAAACCGGCTGCTTCAGAGGAAGCAAATGGTTGTTGATGTCCTCCATCCAGGCAAAGCCACAGTCCCTAAGACTGAGATCAGGGAGAAGCTGGCCAAAATGTACAAGACCACCCCCGATGTGGTGTTCGTCTTCGGCTTCAGGACACAGTTTGGTGGTGGCAAGACGACAGGTTTCGCCATGGTCTACGACTCTCTCGACTACGCTAAGAAGAACGAGCCCAAGCACAGACTGGCCAGGCACGGTCTCTATGAGAAGAAGAAGTCCTCCAGAAAACAGCGCAAGGAACGCAAGAACAGAATGAAGAAAGTACGAGGTACCAAGAAAGCCAGTGTGGGTGCTGCTGGCAAAAAGGTAACTTGGCTGTTCCTCCTATGGTGCATTCCTCTTGCTACAGTATGGGTGCGTCTCAATAGTCACCATTTTACACAAGCTGCTTTTGTTGTCCTTCCTCTGCTTTGATTTGAAAACGCAGTG

Function

NR:

description
40S ribosomal protein S24 isoform X1

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02974 RP-S24e, RPS24; small subunit ribosomal protein S24e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613497.2 False 586 mRNA 0.50 7 81538351 81542584
XM_021613506.2 False 583 mRNA 0.50 6 81538351 81542584
XM_021613515.2 False 565 mRNA 0.51 5 81538351 81542584
XM_036986845.1 True 607 mRNA 0.51 4 81540550 81542584

Neighbor

gene id symbol gene type direction distance location
LOC118965609 NA coding downstream 5994 81465550 ~ 81532357 (-)
LOC110532756 LOC106577174 coding downstream 88880 81175845 ~ 81449471 (-)
ppifa LOC106577170 coding downstream 364288 81168802 ~ 81174063 (-)
LOC110530390 LOC106577181 coding downstream 546637 80975992 ~ 80991714 (-)
nphp1 LOC106577164 coding downstream 571708 80940215 ~ 80966643 (-)
qrfpra LOC106577227 coding upstream 2641 81545225 ~ 81557378 (-)
LOC110530475 eif4ebp2 coding upstream 64894 81607478 ~ 81629726 (-)
LOC110530466 LOC106577213 coding upstream 105828 81648412 ~ 81725766 (-)
LOC110530522 LOC106577205 coding upstream 321240 81863824 ~ 81905659 (-)
LOC110530583 LOC106577201 coding upstream 607543 82150127 ~ 82156558 (-)
G92134 NA non-coding downstream 33300 81504560 ~ 81505051 (-)
G92097 NA non-coding downstream 83319 81404393 ~ 81455032 (-)
G92099 NA non-coding downstream 130369 81407286 ~ 81407982 (-)
G92089 NA non-coding downstream 143508 81371301 ~ 81394843 (-)
G92193 NA non-coding upstream 42683 81585267 ~ 81587688 (-)
G92233 NA non-coding upstream 134693 81677277 ~ 81679005 (-)
G92176 NA non-coding upstream 235975 81778559 ~ 81784757 (-)
G92269 NA non-coding upstream 236839 81779423 ~ 81784353 (-)
G92277 NA non-coding upstream 256815 81799399 ~ 81799636 (-)
G91947 NA other downstream 502213 81035575 ~ 81036138 (-)
G91943 LOC106577167 other downstream 506993 81030832 ~ 81031358 (-)
G91941 NA other downstream 509739 81027908 ~ 81028612 (-)
G92566 NA other upstream 617823 82160407 ~ 82161743 (-)
LOC110532782 LOC106577197 other upstream 751229 82291777 ~ 82301867 (-)
LOC100301648 LOC106577193 other upstream 1407030 82949609 ~ 83267163 (-)
G94201 NA other upstream 1941472 83484056 ~ 83485937 (-)

Expression


Co-expression Network