LOC110530473 (LOC106577216)


Basic Information

Item Value
gene id LOC110530473
gene name LOC106577216
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81635394 ~ 81641798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613563.2
ATTTCCGGTGAACTGTCAAATTTCGACCTGTCATCCACGGAGAAAGCCTGGACCAAAAGTAACAGGACGGAGTGTTAGAACCACTGAGACAAGGTGAAGACAACAGACATGTCCTTTATATTTAACTGGATCTACAGAGGCCTCAGTGGTGTGCTGCAGTTACTAGGTTTATATAAGAAGTCTGGGAAACTGGTGTTCCTTGGTTTGGACAATGCTGGGAAAACAACACTACTGCACATGCTCAGAGATGACCGACTGGGACAGCATGTGCCAACACTACACCCCACATCAGAAGAGCTGACCATTGCTGGGATGACATTCACAACATTTGATCTTGGTGGTCACACACAAGCCAGGAGAATCTGGAAGAACTACCTCCCAGCTATAAACGGTATAGTCTACATGGTGGATTCGGCAGACCATGAGAGACTACAAGAAGCCAAAATTGAACTGGATGCGCTGTTAACAGACGACACCATCTCCAACGTGCCTGTACTTATCCTGGGGAATAAGATCGACCGTCCAGAGGCCATCAGTGAAGACGCACTCAGAGGGATGTTCGGGCTCATTGGACACACTACTGGAAAGGGTAATGTGTCACTGAAGGAGCTGAACCTGAGGCCCATGGAGATCTTCATGTGCAGTGTTCTGAAGAGACAGGGATATGGAGATGGTTTCCGCTGGCTCTCACAGTACATTGACTGATCTATATATCACTCCCATCTTATCTCTCTTTTGCCTGATTCACACGATAGAGCTAACCTGAACCTTACTGGGTGGGCTTCATCATTTGTTTTCTAattgtcctttccagcatggTTCCAGTAACTATGATCGATGTGTAATGCAGGCCAGCAAGGCTCAATAGTGTGAAAAGGAAGAGTATTTGTTTATCAACTGTTTTGTATGCACAAGAGTACAGGCCTCACACATCTACCTGCTGGAAAAGCTATCAACTGCTAGCATTCATTGTAATTTTTGCATTTGAGTGTGCCCTCAGTAAGTAAATATATTTCTAAGAAAAATGTACTTTTATTGATAAACTTTCAGTATTTTTTGTTGTAGCCCCGGATAAgcacacctcattcaactcatgGAGGCTTGATAataaattgacaagttgaatcaattCTGGTTTGTTTGGGGCTACAATAAAAATATGTGCTGTTGGGGAAACACTGAGCTATTAAAATATTCAGGCCTAGTGATTGTTTGATAACCCTCTAACAGTTGAACCCATTGATAATTGGTCGTCTGAGCCCTATGTAGTGAATTCAAACTTCCTTGTCTAAGCCAAGTATCAACCTGCAAACCCAAGATTTCGTAGTTTACACATTTCGTAGTTTTCAATTATATATTATCGGTTACTTACTGGTGGTGAACATTTAAGGATACCTCATGTCTGTCAAACCATTCTTATTAATATGATTAAGTTAGTTAGGCAATCCCCTCTATGTTCGGCAACGTTACCTCTACACTTATAGGGTAGGACATGCCATCGCTTTGAACCAGTTTGTAACCCcggtttattttttaaatcggtGGCATTTGATTACAGAGGAGTGCTTATTGGTGTAACAGTTCCGCGTTTTCTTTTCGCCATTGCTGATGTTGCCTTCCACGTAATAtaggcctgggttcaaatactattagaaatatttcaaacactttgtACTTCTGGGACTTTTCTGTTGGTTCCATTgcaacaggcaagctcaatcaagcacagctggAGTATTTTACCAATGAGGACAAAGTTGTCAAATGAATGTTTTTGATCGATCAATTCAAGTTGAATCACTACCAACTGATGCCATGAATGTGACTACAAGTGCATTATCACTTTTTATTTATTAATGCTTGTTTGTAATACAAAGGTGCAGTATTTTGTAATACCAGGGTTTTATTACAACCACGTTGTCAGTCACAGACGATGTATGTCATTTCAACTACCAGTACCTACCTACTGTATCGATGGTTTTTGTTACTGTAAAATAAGTACTTGGTGATTATTGGCTGCTCATAGCTATAATATGAGGGTACTTGTGTGGTACTGAAGAATATAGGCTTTGTAGGAAATACACAATATATGTGAGTGCAATAGATAGAGGGTACTTTTTAtcctttttgtacataatgtgaAATTATTCTGCATGCCCTCTtatcaaaataaatattttggaCAATC

Function

NR:

description
PREDICTED: GTP-binding protein SAR1b-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07953 SAR1; GTP-binding protein SAR1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613563.2 True 2188 mRNA 0.40 7 81635394 81641798

Neighbor

gene id symbol gene type direction distance location
ipyr ipyr coding upstream 372 81620220 ~ 81635022 (+)
LOC118966718 NA coding upstream 303282 81331546 ~ 81332112 (+)
zcchc24 LOC106577169 coding upstream 460295 81084034 ~ 81175099 (+)
LOC110530417 LOC106577168 coding upstream 556438 81056995 ~ 81078956 (+)
LOC110532748 LOC106577167 coding upstream 578789 81014705 ~ 81056605 (+)
tysnd1 tysnd1 coding downstream 175 81641973 ~ 81645418 (+)
LOC110530482 LOC106577211 coding downstream 133363 81775161 ~ 81777001 (+)
LOC110532764 NA coding downstream 146065 81787863 ~ 81790971 (+)
scdb LOC106577210 coding downstream 162016 81803814 ~ 81812914 (+)
LOC110530514 LOC106577205 coding downstream 182794 81824592 ~ 81884237 (+)
G91652 NA non-coding upstream 25751 81607137 ~ 81609643 (+)
G91541 LOC106591086 non-coding upstream 93994 81538331 ~ 81541400 (+)
G91503 NA non-coding upstream 240344 81394341 ~ 81395050 (+)
G91498 NA non-coding upstream 244093 81387354 ~ 81391301 (+)
G91488 NA non-coding upstream 262931 81364149 ~ 81372463 (+)
G91678 NA non-coding downstream 35482 81677280 ~ 81679008 (+)
G91685 NA non-coding downstream 46044 81687842 ~ 81688700 (+)
G91703 NA non-coding downstream 87690 81729488 ~ 81729709 (+)
G91705 NA non-coding downstream 90570 81732368 ~ 81732661 (+)
G91706 NA non-coding downstream 91064 81732862 ~ 81733299 (+)
G91064 NA other upstream 869239 80765114 ~ 80766155 (+)
acoxl acoxl other upstream 1870035 79720751 ~ 79765359 (+)
G89667 NA other upstream 2085743 79549017 ~ 79549651 (+)
G87159 NA other upstream 4064924 77570015 ~ 77570470 (+)
G91779 NA other downstream 235741 81877539 ~ 81879178 (+)
LOC110530526 LOC106577204 other downstream 264334 81906132 ~ 81907399 (+)
LOC110530572 LOC106577202 other downstream 486846 82128619 ~ 82163498 (+)
G92511 NA other downstream 500326 82142124 ~ 82142587 (+)
G92575 trmt13 other downstream 539148 82180946 ~ 82181796 (+)

Expression


Co-expression Network