LOC110530466 (LOC106577213)


Basic Information

Item Value
gene id LOC110530466
gene name LOC106577213
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81648412 ~ 81725766 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986874.1
ctccctctttttttcttcCAGCAGCAGGAAGGCGCAATCAGGTCGCATTCTACTCCTCTTCTCATCCTCGTGAAGAGAAGCTAGAACGAAGTGCTGCGCGTGTTTTCTAACCGCACCATGGTGGGAATGACGGAATTGGGGTGCCTTTTCGTCCCGGTGATGATGCTGGTGGGGTTCACCTTGCAAGCGGAAATTAACAacgggaaagaggaggagaaaaagggGAATTTCATGGAAGACGAGCATTGGCTGTCCACCATTTCACAGTACAGCCGCAAGATCAAGCATTGGAATCGCTTCAGAGACgaTGACTATGTGAGGACCTGGGATGAGAATCAGGGAGGCTCTAATGAAAATGTTGACACCACCAAAGACCCCTGTCAGAAGGTGAAGTGTAGCCGAAACAAGGTGTGTATCGCCCAGGGATACCAGAGGGCTGTGTGTGTCAACCGCAAGAAGCTCGAGCACAGACTGAAGCAGCCTGCCCTGAGGTCTCCTGAAGGAGGATGTCAGCCctgtcctttctcctcctctggtcCTGTGTGTGGCTCTGACGGACACAACTACGCCTCCCAGtgtaaattGGAGCAGCAGGCGTGCCTCACAGGGAAGGAGTTGACTACGAAGTGTTCAGGACTTTGTCCCTGTCCAACCGCGACCCCAACCAAAGAGACAGAGGTCAAGCATGagaGTTGTACAGGGCAGGACCTGTCTGATCTGGGGGACAGACTGAGGGAATGGTTCCAGCTGCTGCAGGGCAACGCCAAGCTGAACAACAACAGCAGGACTGGAGCCAGTAACACAGCAGAGGCTACCTCTGGATCAGtcctgGACAGGAGCGTAGTGGTCAGCTGTAAGGACTCTGTAGGCTGGATGTTCTCTAAGCTGGACACCAACAGTGATCAGTATCTGGACCAGGCCGAGCTGGCAGCCATTAACCTGGACAAGTATGAGGTCTGCATCCGACCCTTCTTCAACTCCTGTGACTCCTACAGGGACGGGAAGGTTTCTACAGCCGAGTGGTGCCTCTGCTTCTGGAGACAGAAGCCCCCCTGCCTGGCTGAGCTGGAGAGGATCCAAGTTCAGGAGGGAGGCAAGAACAAACTAGgctTGTTTATCCCTAGCTGTAATGAGGATGGATACTACAGGAAGCTGCAGTGTGATCAGGCCAGGGGAGAATGCTGGTGTGTCGACCAACAGGGAGGGGAACTAGCCAGCTCCAGAATCCATGGCAACCCCGACTGTGaTGACGCGGTGGCATATTCAGGTGATTTTGGCAGTGGGGTCGGATGGGAGGATGAGGAAGATAAAGAAGCGGAGGAGAatgcagaggaggaggaaggagaggtgggagaggcagATGATGAAGGATATATTTGGTGAAGAAAACAATGAAGTCTAGCTAGTCCAACATTACTACCGGAGCAtctcaacttctctctctctctctctctcacacacacacacacacacacatccacacccacacacacacacacaaataatgaTCCTGGAAACCTGAAGAGATGGACACAATTGAAAAAATTGtttggagaagaggaggggtggtgggttggagaagaggaggggtggtgggTTGGAGAAGAGGGATGTG
>XM_036986871.1
ctccctctttttttcttcCAGCAGCAGGAAGGCGCAATCAGGTCGCATTCTACTCCTCTTCTCATCCTCGTGAAGAGAAGCTAGAACGAAGTGCTGCGCGTGTTTTCTAACCGCACCATGGTGGGAATGACGGAATTGGGGTGCCTTTTCGTCCCGGTGATGATGCTGGTGGGGTTCACCTTGCAAGCGGAAATTAACAacgggaaagaggaggagaaaaagggGAATTTCATGGAAGACGAGCATTGGCTGTCCACCATTTCACAGTACAGCCGCAAGATCAAGCATTGGAATCGCTTCAGAGACGAAGTAGAGgaTGACTATGTGAGGACCTGGGATGAGAATCAGGGAGGCTCTAATGAAAATGTTGACACCACCAAAGACCCCTGTCAGAAGGTGAAGTGTAGCCGAAACAAGGTGTGTATCGCCCAGGGATACCAGAGGGCTGTGTGTGTCAACCGCAAGAAGCTCGAGCACAGACTGAAGCAGCCTGCCCTGAGGTCTCCTGAAGGAGGATGTCAGCCctgtcctttctcctcctctggtcCTGTGTGTGGCTCTGACGGACACAACTACGCCTCCCAGtgtaaattGGAGCAGCAGGCGTGCCTCACAGGGAAGGAGTTGACTACGAAGTGTTCAGGACTTTGTCCCTGTCCAACCGCGACCCCAACCAAAGAGACAGAGGTCAAGCATGagaGTTGTACAGGGCAGGACCTGTCTGATCTGGGGGACAGACTGAGGGAATGGTTCCAGCTGCTGCAGGGCAACGCCAAGCTGAACAACAACAGCAGGACTGGAGCCAGTAACACAGCAGAGGCTACCTCTGGATCAGtcctgGACAGGAGCGTAGTGGTCAGCTGTAAGGACTCTGTAGGCTGGATGTTCTCTAAGCTGGACACCAACAGTGATCAGTATCTGGACCAGGCCGAGCTGGCAGCCATTAACCTGGACAAGTATGAGGTCTGCATCCGACCCTTCTTCAACTCCTGTGACTCCTACAGGGACGGGAAGGTTTCTACAGCCGAGTGGTGCCTCTGCTTCTGGAGACAGAAGCCCCCCTGCCTGGCTGAGCTGGAGAGGATCCAAGTTCAGGAGGGAGGCAAGAACAAACTAGgctTGTTTATCCCTAGCTGTAATGAGGATGGATACTACAGGAAGCTGCAGTGTGATCAGGCCAGGGGAGAATGCTGGTGTGTCGACCAACAGGGAGGGGAACTAGCCAGCTCCAGAATCCATGGCAACCCCGACTGTGaTGACGCGGTGGCATATTCAGGTGATTTTGGCAGTGGGGTCGGATGGGAGGATGAGGAAGATAAAGAAGCGGAGGAGAatgcagaggaggaggaaggagaggtgggagaggcagATGATGAAGGATATATTTGGTGAAGAAAACAATGAAGTCTAGCTAGTCCAACATTACTACCGGAGCAtctcaacttctctctctctctctctctcacacacacacacacacacacatccacacccacacacacacacacaaataatgaTCCTGGAAACCTGAAGAGATGGACACAATTGAAAAAATTGtttggagaagaggaggggtggtgggttggagaagaggaggggtggtgggTTGGAGAAGAGGGATGT

Function

NR:

description
testican-2

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K08136 SPOCK; testican

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986874.1 False 1615 mRNA 0.53 10 81648412 81725766
XM_036986871.1 True 1623 mRNA 0.53 11 81648413 81725766

Neighbor

gene id symbol gene type direction distance location
LOC110530475 eif4ebp2 coding downstream 18686 81607478 ~ 81629726 (-)
qrfpra LOC106577227 coding downstream 91034 81545225 ~ 81557378 (-)
rps24 LOC106577218 coding downstream 105828 81538351 ~ 81542584 (-)
LOC118965609 NA coding downstream 116055 81465550 ~ 81532357 (-)
LOC110532756 LOC106577174 coding downstream 198941 81175845 ~ 81449471 (-)
LOC110530522 LOC106577205 coding upstream 138058 81863824 ~ 81905659 (-)
LOC110530583 LOC106577201 coding upstream 424361 82150127 ~ 82156558 (-)
LOC110532767 LOC106577224 coding upstream 457127 82182893 ~ 82187206 (-)
LOC110530609 LOC106577197 coding upstream 465152 82190918 ~ 82198422 (-)
LOC118966721 LOC106577224 coding upstream 484736 82210502 ~ 82218883 (-)
G92193 NA non-coding downstream 60724 81585267 ~ 81587688 (-)
G92134 NA non-coding downstream 143361 81504560 ~ 81505051 (-)
G92097 NA non-coding downstream 193380 81404393 ~ 81455032 (-)
G92176 NA non-coding upstream 52793 81778559 ~ 81784757 (-)
G92269 NA non-coding upstream 53657 81779423 ~ 81784353 (-)
G92277 NA non-coding upstream 73633 81799399 ~ 81799636 (-)
G92257 NA non-coding upstream 83583 81809349 ~ 81812912 (-)
G92284 NA non-coding upstream 92568 81818334 ~ 81820763 (-)
G91947 NA other downstream 612274 81035575 ~ 81036138 (-)
G91943 LOC106577167 other downstream 617054 81030832 ~ 81031358 (-)
G91941 NA other downstream 619800 81027908 ~ 81028612 (-)
G92566 NA other upstream 434641 82160407 ~ 82161743 (-)
LOC110532782 LOC106577197 other upstream 568047 82291777 ~ 82301867 (-)
LOC100301648 LOC106577193 other upstream 1223848 82949609 ~ 83267163 (-)
G94201 NA other upstream 1758290 83484056 ~ 83485937 (-)
G94613 NA other upstream 2075566 83801332 ~ 83802471 (-)

Expression


Co-expression Network