LOC110530482 (LOC106577211)


Basic Information

Item Value
gene id LOC110530482
gene name LOC106577211
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81775161 ~ 81777001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613590.2
TATTTATTTAGCTAGTTCCATTCTATAATTGTCTTTGGTGTAGTCCAGCTGGTCTGGTCGGTGGTGAAAGACATAGCACTCTTAgcacttattttatttattatttcatcGTCAATGGGTTTAAAAAATGTACTTTACCTTTTCTTATAACAACTCACTGGACGACAGGTTCCCTTCCTCCCCACAGGAAGACCTGGGTTCTCAACGGTTGTCCCGGGGGAATCTGGTGCAGAAACTAACCGTAATCAAAAGGATCAATCAACGGTTGGCAGACAAAGATCATCGAAGTTGGAATAGTGACACTGGATCAGTCACAGACATGTCCATGATATCAGAGTCTGACAGTGGTCTCTTCTACAGTCCACTGGAGGAGTCTCTCTGTGCCCACATTGTAAAGACCATTGTGGAGAGCCTCTCAGACGCTACGGACACTGTCCTGTGTTGCTCCAAACTGGTCCTACCAGATCCTCTCCTGCACAACATCAGTCGGGAGCTTCTCCATCTGGCTGCTAGTGAGCCTTGCGGCCTCAAGGGGGCGCTCATTgacctgtgtgtggagcaggggGACCAACAAGGAGAACTGTGTAGTGTGGAGCAGATAGCCGTTGACCATAACCTGGTTCCAACCTTCCATCTCACCCTCGTGCTACGGCCAGAGGTGGGGGGGTTGTGGCCCAAGGTGCAGAGGCTCTTTGGGGGCCGGAAGGCTGTGTCCCCCCAGAGGCAAAGTGGGAGACACACACTCAGGCTCAGTACCGGGTTCAGGGCTATCAAAAGAAAGCTATATAGTTCAGGAGAACTGCTCGTTGAAGAGTGCTGACCTGGCAAGAGCTATGGATGTTTTGTAGTAGATATCAGACCTGAGTCTAATAATACATATCTGAAATACTTTGATACACTTAGTATGCTGCACTTTGTTTGGTTTGCTTGGTGCAATGGAACCAGTGTAAtggtcccaaaagtgcaaatcaagcATGCTTCAATACTTTGACTATGGTCGGATGTATATAATATTGTCTGACTCTGGTCTGATGTATATATTGTCTATGACTCTGGACTGAAGACAACACTACATTGAGAGAAGCCTTGTATGGCTCTGTGTGATAGAAGTGATTTCCAATGTGGTCACCAATGTACCTAAAGAAAACTCACTCCACTTCTGAAGCTGTGTAGGTACCTTGAATAGTCAAATTCTGAAGATGCTTATAATTCCCATAGTCGGGAAAGAAAAGCTTGTGCAACAATGTTAACcatgtattatttttttgtatatgctaaaatgtattacatgttTTCTAGGGAACACATCTTATGGCAGCTTTTCCACATCAATTGACATGTGGAGACAATTGAATGTAAGATATGGCCATAAAGACAATGAAAAACTTCTGTTGTTGAACCATGGATTTGATTAGACAGTATTTATTTGAACCATGGATTTGATTAGAAAGTATTTGATACTCATATTCACCTGAACTGCTTTTTGTACTTTCTTTCAAGAACTTGAAACTGAAAaactaaaatacattttcaaattaaAATATTCATGTGAAA

Function

NR:

description
DNA damage-inducible transcript 4 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613590.2 True 1554 mRNA 0.43 2 81775161 81777001

Neighbor

gene id symbol gene type direction distance location
tysnd1 tysnd1 coding upstream 129743 81641973 ~ 81645418 (+)
LOC110530473 LOC106577216 coding upstream 133363 81635394 ~ 81641798 (+)
ipyr ipyr coding upstream 140139 81620220 ~ 81635022 (+)
LOC118966718 NA coding upstream 443049 81331546 ~ 81332112 (+)
zcchc24 LOC106577169 coding upstream 600062 81084034 ~ 81175099 (+)
LOC110532764 NA coding downstream 10862 81787863 ~ 81790971 (+)
scdb LOC106577210 coding downstream 26813 81803814 ~ 81812914 (+)
LOC110530514 LOC106577205 coding downstream 47591 81824592 ~ 81884237 (+)
fih1 LOC106577208 coding downstream 75647 81852648 ~ 81861895 (+)
LOC110530526 LOC106577204 coding downstream 129915 81906132 ~ 81907399 (+)
G91710 NA non-coding upstream 37457 81737502 ~ 81737704 (+)
G91709 NA non-coding upstream 38630 81736323 ~ 81736531 (+)
G91706 NA non-coding upstream 41862 81732862 ~ 81733299 (+)
G91705 NA non-coding upstream 42500 81732368 ~ 81732661 (+)
G91703 NA non-coding upstream 45452 81729488 ~ 81729709 (+)
G91721 NA non-coding downstream 780 81777781 ~ 81778177 (+)
G91731 NA non-coding downstream 24550 81801551 ~ 81801784 (+)
G91738 NA non-coding downstream 36842 81813843 ~ 81814164 (+)
G91773 LOC106577205 non-coding downstream 90454 81867455 ~ 81874732 (+)
G91541 LOC106591086 other upstream 233761 81538331 ~ 81541400 (+)
G91064 NA other upstream 1009006 80765114 ~ 80766155 (+)
acoxl acoxl other upstream 2009802 79720751 ~ 79765359 (+)
G89667 NA other upstream 2225510 79549017 ~ 79549651 (+)
G87159 NA other upstream 4204691 77570015 ~ 77570470 (+)
G91779 NA other downstream 100538 81877539 ~ 81879178 (+)
LOC110530572 LOC106577202 other downstream 351643 82128619 ~ 82163498 (+)
G92511 NA other downstream 365123 82142124 ~ 82142587 (+)
G92575 trmt13 other downstream 403945 82180946 ~ 82181796 (+)

Expression


Co-expression Network