Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110532764 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 81787863 ~ 81790971 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| tRNA (uracil(54)-C(5))-methyltransferase homolog |
| id | name | namespace |
|---|---|---|
| GO:0006396 | RNA processing | biological_process |
| GO:0001510 | RNA methylation | biological_process |
| GO:0008173 | RNA methyltransferase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110532764 | True | 484 | mRNA | 0.55 | 4 | 81787863 | 81790971 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110530482 | LOC106577211 | coding | upstream | 10862 | 81775161 ~ 81777001 (+) |
| tysnd1 | tysnd1 | coding | upstream | 142445 | 81641973 ~ 81645418 (+) |
| LOC110530473 | LOC106577216 | coding | upstream | 146065 | 81635394 ~ 81641798 (+) |
| ipyr | ipyr | coding | upstream | 152841 | 81620220 ~ 81635022 (+) |
| LOC118966718 | NA | coding | upstream | 455751 | 81331546 ~ 81332112 (+) |
| scdb | LOC106577210 | coding | downstream | 12843 | 81803814 ~ 81812914 (+) |
| LOC110530514 | LOC106577205 | coding | downstream | 33621 | 81824592 ~ 81884237 (+) |
| fih1 | LOC106577208 | coding | downstream | 61677 | 81852648 ~ 81861895 (+) |
| LOC110530526 | LOC106577204 | coding | downstream | 115945 | 81906132 ~ 81907399 (+) |
| LOC110530536 | LOC106577203 | coding | downstream | 119147 | 81910118 ~ 82005198 (+) |
| G91721 | NA | non-coding | upstream | 9686 | 81777781 ~ 81778177 (+) |
| G91710 | NA | non-coding | upstream | 50159 | 81737502 ~ 81737704 (+) |
| G91709 | NA | non-coding | upstream | 51332 | 81736323 ~ 81736531 (+) |
| G91706 | NA | non-coding | upstream | 54564 | 81732862 ~ 81733299 (+) |
| G91705 | NA | non-coding | upstream | 55202 | 81732368 ~ 81732661 (+) |
| G91731 | NA | non-coding | downstream | 10580 | 81801551 ~ 81801784 (+) |
| G91738 | NA | non-coding | downstream | 22872 | 81813843 ~ 81814164 (+) |
| G91773 | LOC106577205 | non-coding | downstream | 76484 | 81867455 ~ 81874732 (+) |
| G91826 | NA | non-coding | downstream | 158391 | 81949362 ~ 81949566 (+) |
| G91541 | LOC106591086 | other | upstream | 246463 | 81538331 ~ 81541400 (+) |
| G91064 | NA | other | upstream | 1021708 | 80765114 ~ 80766155 (+) |
| acoxl | acoxl | other | upstream | 2022504 | 79720751 ~ 79765359 (+) |
| G89667 | NA | other | upstream | 2238212 | 79549017 ~ 79549651 (+) |
| G87159 | NA | other | upstream | 4217393 | 77570015 ~ 77570470 (+) |
| G91779 | NA | other | downstream | 86568 | 81877539 ~ 81879178 (+) |
| LOC110530572 | LOC106577202 | other | downstream | 337673 | 82128619 ~ 82163498 (+) |
| G92511 | NA | other | downstream | 351153 | 82142124 ~ 82142587 (+) |
| G92575 | trmt13 | other | downstream | 389975 | 82180946 ~ 82181796 (+) |
