LOC110530514 (LOC106577205)


Basic Information

Item Value
gene id LOC110530514
gene name LOC106577205
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 81824592 ~ 81884237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613668.2
AAACTCTTTCGATAAATTAATTTTTCAGGGCGCAAATACCACCAGATCTATTTGAGATCAGTCGATTTCGGCCGGTTTAATATTAATTAACTTTATCCTGAATCCTTCAGAAGGCCGCGCGATGAAAAAGATTTCGGGCTGCTATTTGTCTGCGCGAGGCCCAGGGTGCCCTTTTGATCATTTCAGTCTCTCCTCGGTGTGCTCCTTCTGATTGGTCGAGGGAGTAAGAAGGGGAACATCTTTAATTAAGTAGATAATCTCTTGTTGGGATGAGAGTGGGTCAATTTCAGAGCCCCCCTCGAGTGAGTCCCGCATGAGAACCTTGGCATATACAGCTAGTGGAGTTGTGTATGTATGTAGGGTTGGTAGCCTCTCGCTATATCCCCTATTCTCCTTTAGAGAGCTGCTGAATGTGCATGCCATCTCTATCCTCTCTCGTCTCTTCTGGCAGGATGTTCATGCATTTGGAGGTCTTTTACTGTATCTTAATGTTGATGTCTCACATGACAACGTCTTGCTGCAGCTGGTCAGTGAATAATTTCCTTATGACTGGACCTAAGGTGTACCTGATTTACTCCAGCAGTGTAGCAGCCGGGGCTCAGAGCGGCATCGAGGAGTGTAAGTATCAGTTTGCCTGGGACCGATGGAACTGCCCTGAGAGAGCCCTGCAGCTGTCCACACACAGAAGCCTCCGCAGCGCGAACAGGGAGACAGCGTTTGTCCATGCCATCAGTTCAGCAGGGGTCATGTACACTCTGATGAGGAACTGCAGTCTGGGGGACTTTGACAACTGTGGCTGTGATGACACCAGGAACGGACAGCGGGGGGGTACAGGCTGGCAGTGGGGCGGCTGCAGTGACAACGTGGAGTTCGGTGAGGCCATCTCCAAGCAGTTTGTTGACACGCTGGAGACAGGCCAGGACGCACGGGCCGCCATGAACCTCCACAACAACGAGGCTGGACGCAAGGCAGTGAAAGGGACTATGCAGAAGACGTGTAAGTGCCATGGCGTCTCTGGGTCCTGCACCACACAGACCTGCTGGTTACAGCTCCCAGATTTCAGGGAGGTGGGAAACTATCTGAAGGAGAAGTACCACCGAGCACTGAAGGTGGACCTGCTCCGGGGGGCTGGGAACAGTGCAGCCAGTCGAGGGGCCATTTCCGAGACCTTCAGCTCCATCTCTCGTAAAGAACTGGTCCACCTAGAGGACTCCCCAGACTACTGCCTGGAGAACCGTACCCTGGAACTGCCCGGCACAGAGGGCAGAGAGTGCCTGAAGAAGGGCAAGAGCCTAAATAAGTGGGAGAAGCGTAGCTGCAAGAGGCTGTGCGGGGAGTGTGGTTtagcagtggaggagaggaaggcggAGTTGGTGTCCAGTTGCAATTGCAAGTTCCACTGGTGCTGCGCGGTAAAGTGCGAGCAGTGCCGCAAGACAGTGACCAAGTACTTCTGCGTGAAGAATGGGGGGCAGAGGGGGAAGAACGAGAGCGCCGGCAGCCGTAGGAAGAACCTGAGGCTGAGGAAGAAGCACTGAGCGGCATCCATCTtcctcaccatcatcatcatcactgccaCACTCCATGTCTTCTCACAAGCTGATTTTCACAGACCTCTGTGCACTGAAGCTGTGCCCCTCTCAAACATTTCTACAACACGCTTTCTGCTTTTGTTCTAAAGACataattgaaaatgtatttattgaatAAGACTAGTATTGTTATTATCCTAATCAAACGTTTAATAGTGGGGgagaaaatgtgtaaaaaaaaacatgttgatgAAACTACATGATAGAGAAAGGAGGGTAACTATTACTTGTCTAGAACTGATGGTATACATATATTTAacagtatatatttttacaacttttttcCCCAATTATATATAAGTCATTGGGCATTTAAAGCATGTTACATACGGCCGCTCTGAATAATCTCCTTCATATTTGATAGCTTGAACAACTCTTCCTAAATGGTCAGTCCATGGCATACCTCAACAACATCTTATTTATTGTCATATGTACCACCAATGAGCTATGCCATTTCTGATTGGTCAGTTTATCAGACATTCCTTCCTGTCATGATGACAACTCCAGCCCAAGCTCTCGCTACGCGTGGCAGTGCCGCCAGCCCTGACCAGCCCTCTCCAACCCTGACCAGCCCTCCCctccccagcccagccctctcctgccctgccctcctctcccttcccttcccagcCTTGCCTTAAGGATGTATTTAATTGTAAATAAAATTAAGCACTTTGTTCTGTATATTGTTAATTTATTGCGCATGTTTTTCCCAAGTTGTTGCTTTATTGTTGATATTTTCTTTAAAACTTTTGTAATTAAAAAAGTATAATCTTAAACCCCCTATTATATTAATTAATTGAGCATGCCCATCACCCATTTCACACCCATTCATTTCAGAAGTGTTGAATTAATTTCAGAAGTGTTTAAATAAAATGCATGATTATTTCTAATATTCCCCCTGTGTGACATATAAATCACCAATGTTCAGCAGTGGTAGGCTACAACACAACCTGTGTCTTGTTACATTGTTCACTTGGGGATCTGATAACCCTCTGGGacaaataaacaacaa
>TU101040
TGCCTGAAGAAGGGCAAGAGCCTAAATAAGTGGGAGAAGCGTAGCTGCAAGAGGCTGTGCGGGGATGGTTCTCTCCCTGACAGTTGACCAGGAAGTCGTTGAGGTGCATGATGGTCATGCCCAGAGCTCCCAGCGAGGCACTCTCCACGCCAGTACCATTGGTCACGATGCTGGCTGCAGCTATGGCGTCTGAAATATGCTTCTGATTGTCTGACATGTGTCTCATGATCCAGATGGAAAGACCAAAGTCCAGGCCATTACGTGTCAGAAGGTCTAGGATGGTGGGGAAACACAAATAAAGACTTTTACACTTGACTTCAAAGCAAATATGAGTAGCTGAGTttatttacatacacagccctgattggctgataggatgGTCTAGAGCTCACCCCCTTACCCAGACGAATGGTCATTGGTCTATTATAATCAGATCAaattgtgatgtcatgatctgGGCCAAAAACTCCATTGCATCTCAACATGCTGAAATTCAAGGCATTCAAGTCAATTTCAGAGTGTTATTTCGAACTCAGTgtggaaataaataaaacaataagaatATCATGTCTTTAACTccactgcccctttaagggctTTTCACACTGCACAGGCCGTCTTATCCTAGGGCTCAGAGATCCCTTTAAATCTGTAGTTTGAAGACTGTTATTCCTAGACTTgtaccagatctgtttgtgcttctcTCACCAACTCCAGCAGTCCTTGACATGCCAAGCATGGCCATACAGCacatacagatctgggaccaggcttcaTTACTCCTAAATCAtctaaatggaattgaccccaactggGCAGGTAACTCACCCAAGAAACTCACCCAGGAAACTCACCCCGGTAACGCACCCTGGTAATGCGCCCTGGTAACTCACATAGGAAACTGTTAAGGGAATGTTTAtctataatgactaattatgtatacatttcaatcaggatgtaCTAGTCAGAATACTGTTATGCTACTGTACATGTatgaattttctctcttgctcccagTATTGAATATAATGTAGTGAATGTAGTCGGGAGTTTAgtacaatgacggtctgttccttggtacaaatgaatgaactatctccagactgtctagaatgcttatctacaccgactgaccttggctctaggcgaggagggaaggcttgagagctatagagcctttctaccagtgtcaagaagagacggaacatttagaaaacactgacgtcattttcagtttataacctgtggtaaaatgtgtatgaacTCAGTACTCTCTTGATTAAAGGCTGTTACTTGACTTTTAAGACCGGGGCTATACCATTCCTATacaataagggtcttacaaattcttatgaattgacagagtgtttaattgtaattgggaattaaaacagaggaattaaattccttcaACAGAAACTCACCCAGGAGACTTACCCAGGAAACTCACCCAGGAAACTCACCCAGGAAACTCACCCAGATCTGGCTGTATTCCTGTGACTCTGTCGTCGATGCGGAGGTGAGTGTAGAGAGGAGCAGGTTCAGAGGCAGACTGACCACAGGACACAGCATGGGCATCAAACAAATTCTTCAGGTCCTTACGACTCCGGATACTACACACCAACATGGAAACAAAAAGTTGGAGGCCCCAATTCA
>TU101039
GGGGgagaaaatgtgtaaaaaaaaacatgttgatgAAACTACATGATAGAGAAAGGAGGGTAACTATTACTTGTCTAGAACTGATGGTATACATATATTTAacagtatatatttttacaacttttttcCCCAATTATATATAAGTCATTGGGCATTTAAAGCATGTTACATACGGCCGCTCTGAATAATCTCCTTCATATTTGATAGCTTGAACAACTCTTCCTAAATGGTCAGTCCATGGCATACCTCAACAACATCTTATTTATTGTCATATGTACCACCAATGAGCTATGCCATTTCTGATTGGTCAGTTTATCTCGCTACGCGTGGCAGTGCCGCCAGCCCTGACCAGCCCTCTCCAACCCTGACCAGCCCTCCCctccccagcccagccctctcctgccctgccctcctctcccttcccttcccagcCTTGCCTTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613668.2 False 2607 mRNA 0.47 7 81824592 81835491
TU101040 False 1656 lncRNA 0.38 2 81834156 81884237
TU101039 True 443 lncRNA 0.37 2 81834634 81835118

Neighbor

gene id symbol gene type direction distance location
scdb LOC106577210 coding upstream 11678 81803814 ~ 81812914 (+)
LOC110532764 NA coding upstream 33621 81787863 ~ 81790971 (+)
LOC110530482 LOC106577211 coding upstream 47591 81775161 ~ 81777001 (+)
tysnd1 tysnd1 coding upstream 179174 81641973 ~ 81645418 (+)
LOC110530473 LOC106577216 coding upstream 182794 81635394 ~ 81641798 (+)
fih1 LOC106577208 coding downstream 17157 81852648 ~ 81861895 (+)
LOC110530526 LOC106577204 coding downstream 71425 81906132 ~ 81907399 (+)
LOC110530536 LOC106577203 coding downstream 74627 81910118 ~ 82005198 (+)
LOC110530572 LOC106577202 coding downstream 293128 82128619 ~ 82163498 (+)
LOC110530588 LOC106577200 coding downstream 336585 82172076 ~ 82179077 (+)
G91738 NA non-coding upstream 10428 81813843 ~ 81814164 (+)
G91731 NA non-coding upstream 22808 81801551 ~ 81801784 (+)
G91721 NA non-coding upstream 46415 81777781 ~ 81778177 (+)
G91710 NA non-coding upstream 86888 81737502 ~ 81737704 (+)
G91709 NA non-coding upstream 88061 81736323 ~ 81736531 (+)
G91773 LOC106577205 non-coding downstream 31964 81867455 ~ 81874732 (+)
G91826 NA non-coding downstream 113871 81949362 ~ 81949566 (+)
G91829 NA non-coding downstream 116915 81952406 ~ 81952619 (+)
G91832 NA non-coding downstream 119863 81955354 ~ 81955569 (+)
G91837 NA non-coding downstream 128832 81964323 ~ 81964678 (+)
G91541 LOC106591086 other upstream 283192 81538331 ~ 81541400 (+)
G91064 NA other upstream 1058437 80765114 ~ 80766155 (+)
acoxl acoxl other upstream 2059233 79720751 ~ 79765359 (+)
G89667 NA other upstream 2274941 79549017 ~ 79549651 (+)
G87159 NA other upstream 4254122 77570015 ~ 77570470 (+)
G91779 NA other downstream 42048 81877539 ~ 81879178 (+)
G92511 NA other downstream 306633 82142124 ~ 82142587 (+)
G92575 trmt13 other downstream 345455 82180946 ~ 82181796 (+)
LOC110530624 cssa18h10orf11 coding downstream 572062 82456299 ~ 82916411 (+)
G91838 NA non-coding downstream 80616 81964853 ~ 81965227 (+)
G93204 NA other downstream 1204294 83088531 ~ 83089932 (+)

Expression


Co-expression Network