LOC110530572 (LOC106577202)


Basic Information

Item Value
gene id LOC110530572
gene name LOC106577202
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82128619 ~ 82163498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613766.2
TTGAAGGTACTGCATCATTCTGCCAGCCTCACAGATAGAATTTTAAGGTCTTTCGAGTGGGAGTAGATCGTCAGCTGGACAAAGCTTTTTTGAAGAATGACTTCGAGGTGCCCCAGATGCACAAAAGATGTGTTTTTTGCTGAGAAAGTGAGCTCGCTGGGGAAGAACTGGCACCGGTTCTGCCTGAAATGCAAACGCTGTAACAAAACCCTGTCGGCTGGCAACCACGCTGAGCATGATGGACTGCCCTACTGTCACAAACCATGCTACGGAACTCTCTTTGGACCCAAAGgtgtgAACATCGGAGGGGTAGGCTCCTACATCTACGAGACTCCTCAACCCACCTTCGACTGCCCCTCCGAGGGATCCCCCACCACACCATGGACCACCATGCAGGTCACCTGGAACCAGCCCAAAGTTCTTCCCCCTCCAACCAGGACATTTGCTGGAGAGACCTCACTCTGTCCTGGCTGTGAGAAAGTGGTCTATTTCGCAGAGAAGGTGATGTCCCTGGGTAGGAACTGGCACAGACCGTGCCTGCGCTGTGAGAGGTGTAAGAAGACactgacctctggtggacatgcTGAGCATGAAGGGATACCTTACTGCCATGTCCCTTGCTACGGCATCCTGTATGGACCAAAAGGAGTGAACATTGGCAACGTGGGCTGTTACATCTACGAGAAAGAAGGCATGGCGCAAACTGAAATACCCAGCCAGTCCTAGCCACACACTGAAAGTGAGATGAATGTTAATAGCCAATAGAAAACTCTGGTTAAATGTCCTCGGTTTGGGGTTTCAGTTTGATTTGGGTAATTTCAGTGACTGAATTGATTGAAATTACTGAATTGCGTGACTGAAGTTCTTGTGATGGAACCGACCACGCGATCACAGGTCAACATGAGGTCATGTTTCTTTATTTGTTTTCATGATCACAGAAATGATAACACATGGAAGGGACATTTACAAAAAACATTCTGCATTTTATTCTAATGTATTAACGTAATAATGTTTAGGAATATTTAAATCACGTTTGCAACCTAAAGTTATATAGCATTATACCGGCACACTTTAAGTgtttttacatatatatatatatatatatatatttaatatatgcgtgtacagtaccagtcagaagtttggatac
>XM_036986901.1
TTGAAGGTACTGCATCATTCTGCCAGCCTCACAGATAGAATTTTAAGGTCTTTCGAGTGGGAGTAGATCGTCAGCTGGACAAAGCTTTTTTGAAGAATGACTTCGAGGTGCCCCAGATGCACAAAAGATGTGTTTTTTGCTGAGAAAGTGAGCTCGCTGGGGAAGAACTGGCACCGGTTCTGCCTGAAATGCAAACGCTGTAACAAAACCCTGTCGGCTGGCAACCACGCTGAGCATGATGGACTGCCCTACTGTCACAAACCATGCTACGGAACTCTCTTTGGACCCAAAGgtgtgAACATCGGAGGGGTAGGCTCCTACATCTACGAGACTCCTCAACCCACCTTCGACTGCCCCTCCGAGGGATCCCCCACCACACCATGGACCACCATGCAGGTCACCTGGAACCAGCCCAAAGTTCTTCCCCCTCCAACCAGGACATTTGCTGGAGAGACCTCACTCTGTCCTGGCTGTGAGAAAGTGGTCTATTTCGAGAAGGTGATGTCCCTGGGTAGGAACTGGCACAGACCGTGCCTGCGCTGTGAGAGGTGTAAGAAGACactgacctctggtggacatgcTGAGCATGAAGGGATACCTTACTGCCATGTCCCTTGCTACGGCATCCTGTATGGACCAAAAGGAGTGAACATTGGCAACGTGGGCTGTTACATCTACGAGAAAGAAGGCATGGCGCAAACTGAAATACCCAGCCAGTCCTAGCCACACACTGAAAGTGAGATGAATGTTAATAGCCAATAGAAAACTCTGGTTAAATGTCCTCGGTTTGGGGTTTCAGTTTGATTTGGGTAATTTCAGTGACTGAATTGATTGAAATTACTGAATTGCGTGACTGAAGTTCTTGTGATGGAACCGACCACGCGATCACAGGTCAACATGAGGTCATGTTTCTTTATTTGTTTTCATGATCACAGAAATGATAACACATGGAAGGGACATTTACAAAAAACATTCTGCATTTTATTCTAATGTATTAACGTAATAATGTTTAGGAATATTTAAATCACGTTTGCAACCTAAAGTTATATAGCATTATACCGGCACACTTTAAGTgtttttacatatatatatatatatatatatatttaatatatgcgtgtacagtaccagtcagaagtttggatacac
>TU101849
GCCTCACAGATAGAATTTTAAGGTCTTTCGAGTGGGAGTAGATCGTCAGCTGGACAAAGCTTTTTTGAAGAATGACTTCGAGGTGCCCCAGATGCACAAAAGATGTGTTTTTTGCTGAGAAAGTGAGCTCGCTGGGGAAGAACTGGCACCGGTTCTGCCTGAAATGCAAACGCTGTAACAAAACCCTGTCGGCTGGCAACCACGCTGAGCATGATGGACTGCCCTACTGTCACAAACCATGCTACGGAACTCTCTTTGGACCCAAAGgtgtgAACATCGGAGGGGTAGGCTCCTACATCTACGAGACTCCTCAACCCACCTTCGACTGCCCCTCCGAGGGATCCCCCACCACACCATGGACCACCATGCAGGTCACCTGGAACCAGCCCAAAGGCAAGGGACAGTAGATCCCAGATCTATTTGTCATGCTAAACAATGTCCACAGGAGCTgagcaagacagcacaaaccgatttgggaccaggctaaagCGAGGGGagtagtagtattattaattAAGGGAGCTTAGAGTAGCATATTGTCTTGATGAAAAACAAATACCCTCCTTAGCTCTCGCAacctcgcgcacacacacactgttggttacgggcttgtaagtaagcatttcacggtatgtttgtattcggcgcatgtaccaataaagtttgatttgatttgaacctgtCCTTTTTATCAGGGCTGCTCAAATAAACTGGCCTTGCCAAGTGCTCCAAGTATGACCGTTAAGGGTTAAATATAGCAACataaagggaatagagagagggttaCTCACCATCAAATGGTTGTAACGACTGTCTTgtttcacacacaaacatacacacacttgtAATGACCCTCTGTTTGTCACTGGGGAGGAATGAGGCATTTTCATTGGCCAGCTTTGATTGGCTCACTTCCTGAAATATTTTGCCTTAATGAGGCTTTTCCTACAGACGAGCCAATTGTGTTAGTGACACTTCACATGTGACAGGGGACGTAATGTTCCAAGTAAAATTGACACATTACTTTGAGTTATATAAAAGGATGGCTTGTATCTAAGATACATTTCTAAGATATAAACCCTCTAAATCAGGACCAATGGTTTTGAAGTGATTTGCAGCACAAGAGATGTCTATCTCTGACTATGTCTTCAAAGAACCATCTCTGATTACAAGATTCAAGATTGACCAACAGATCTTTTTAAAAGATCTTCTCCACAATTAGTGATTAGCATTTCCTTTGAAGATTACAATTATTTTGACGGAAGGGGTGGGAGCATTGCTGATTGCTCATTATTACGATTACGATAAAAAAACTTTTTGCTACAGTATGTATCACACTGCGTTACTATTCAATCTGCAAACTGCGTGGTTCACTTAGAATAGATAAGTTGTGTATATTGAATCATTCTGTAAAGTAGgagattacatttattttacagtaGCAGCTGGACTTGGTCACTGGTATGCTGAGTTTGTGTCTGTTCTTATATTTGCTGTCTGGTTGGAGGAATACAATCTGCATGTTTCTGTGGTGTTAACTTCTGAGTTTAAGTGAGGTTAATTTATAAATTTATGTGGGGTGAACTTATGAATAACCTCCAGTCACTGTTGTTTTTCCCAGTTCTTCCCCCTCCAACCAGGACATTTGCTGGAGAGACCTCACTCTGTCCTGGCTGTGAGAAAGTGGTCTATTTCGCAGAGAAGGTGATGTCCCTGGGTAGGAACTGGCACAGACCGTGCCTGCGCTGTGAGAGGTGTAAGAAGACactgacctctggtggacatgcTGAGCATGAAGGGATACCTTACTGCCATGTCCCTTGCTACGGCATCCTGTATGGACCAAAAGGAGTGAACATTGGCAACGTGGGCTGTTACATCTACGAGAAAGAAGGCATGGCGCAAACTGAAATACCCAGCCAGTCCTAGCCACACACTGAAAGTGAGATGAATGTTAATAGCCAATAGAAAACTCTGGTTAAATGTCCTCGGTTTGGGGTTTCAGTTTGATTTGGGTAATTTCAGTGACTGAATTGATTGAAATTACTGAATTGCGTGACTGAAGTTCTTGTGATGGAACCGACCACGCGATCACAGGTCAACATGAGGTCATGTTTCTTTATTTGTTTTCATGATCACAGAAATGATAACACATGGAAGGGACATTTACAAAAAACATTCTGCATTTTATTCTAATGTATTAACGTAATAATGTTTAGGAATATTTAAATCACGTTTGCAACCTAAAGTTATATAGCATTATACCGGCACACTTTAAGT
>TU101852
GCCTCACAGATAGAATTTTAAGGTCTTTCGAGTGGGAGTAGATCGTCAGCTGGACAAAGCTTTTTTGAAGAATGACTTCGAGGTGCCCCAGATGCACAAAAGATGTGTTTTTTGCTGAGAAAGTGAGCTCGCTGGGGAAGAACTGGCACCGGTTCTGCCTGAAATGCAAACGCTGTAACAAAACCCTGTCGGCTGGCAACCACGCTGAGCATGATGGACTGCCCTACTGTCACAAACCATGCTACGGAACTCTCTTTGGACCCAAAGgtgtgAACATCGGAGGGGTAGGCTCCTACATCTACGAGACTCCTCAACCCACCTTCGACTGCCCCTCCGAGGGATCCCCCACCACACCATGGACCACCATGCAGGTCACCTGGAACCAGCCCAAAGGCAAGGGACAGTAGATCCCAGATCTATTTGTCATGCTAAACAATGTCCACAGGAGCTgagcaagacagcacaaaccgatttgggaccaggctaaagCGAGGGGagtagtagtattattaattAAGGGAGCTTAGAGTAGCATATTGTCTTGATGAAAAACAAATACCCTCCTTAGCTCTCGCAacctcgcgcacacacacactgttggttacgggcttgtaagtaagcatttcacggtatgtttgtattcggcgcatgtaccaataaagtttgatttgatttgaac
>TU101853
GCCTCACAGATAGAATTTTAAGGTCTTTCGAGTGGGAGTAGATCGTCAGCTGGACAAAGCTTTTTTGAAGAATGACTTCGAGGTGCCCCAGATGCACAAAAGATGTGTTTTTTGCTGAGAAAGTGAGCTCGCTGGGGAAGAACTGGCACCGGTTCTGCCTGAAATGCAAACGCTGTAACAAAACCCTGTCGGCTGGCAACCACGCTGAGCATGATGGACTGCCCTACTGTCACAAACCATGCTACGGAACTCTCTTTGGACCCAAAGgtgtgAACATCGGAGGGGTAGGCTCCTACATCTACGAGACTCCTCAACCCACCTTCGACTGCCCCTCCGAGGGATCCCCCACCACACCATGGACCACCATGCAGGTCACCTGGAACCAGCCCAAAGGCAAGGGACAGTAGATCCCAGATCTATTTGTCATGCTAAACAATGTCCACAGGAGCTgagcaagacagcacaaaccgatttgggaccaggctaaagCGAGGGGagtagtagtattattaattAAGGGAGCTTAGAGTAGCATATTGTCTTGATGAAAAACAAATACCCTCCTTAGCTCTCGCAacctcgcgcacacacacactgttggttacgggcttgtaagtaagcatttcacggtatgtttgtattcggcgcatgtaccaa
>TU101854
GCCTCACAGATAGAATTTTAAGGTCTTTCGAGTGGGAGTAGATCGTCAGCTGGACAAAGCTTTTTTGAAGAATGACTTCGAGGTGCCCCAGATGCACAAAAGATGTGTTTTTTGCTGAGAAAGTGAGCTCGCTGGGGAAGAACTGGCACCGGTTCTGCCTGAAATGCAAACGCTGTAACAAAACCCTGTCGGCTGGCAACCACGCTGAGCATGATGGACTGCCCTACTGTCACAAACCATGCTACGGAACTCTCTTTGGACCCAAAGgtgtgAACATCGGAGGGGTAGGCTCCTACATCTACGAGACTCCTCAACCCACCTTCGACTGCCCCTCCGAGGGATCCCCCACCACACCATGGACCACCATGCAGGTCACCTGGAACCAGCCCAAAGGCAAGGGACAGTAGATCCCAGATCTATTTGTCATGCTAAACAATGTCCACAGGAGCTgagcaagacagcacaaaccgatttgggaccaggctaaagCGAGGGGagtagtagtattattaattAAGGGAGCTTAGAGTAGCATATTGTCTTGATGAAAAACAAATACCCTCCTTAGCTCTCGCAacctcgcgcacacacacactgttggt
>TU101864
GCCTCACAGATAGAATTTTAAGGTCTTTCGAGTGGGAGTAGATCGTCAGCTGGACAAAGCTTTTTTGAAGAATGACTTCGAGGTGCCCCAGATGCACAAAAGATGTGTTTTTTGCTGAGAAAGTGAGCTCGCTGGGGAAGAACTGGCACCGGTTCTGCCTGAAATGCAAACGCTGTAACAAAACCCTGTCGGCTGGCAACCACGCTGAGCATGATGGACTGCCCTACTGTCACAAACCATGCTACGGAACTCTCTTTGGACCCAAAGGT
>TU101861
TACCAAATAGAGATATACACTACcatgtcaaacgttttagaacaccaactcattcaagggtttttctgtatttgtactattttctacattctagaataatagtgaagacgtcaaaactatgaaataacacatatggaatcatgtagtaaccaaaaaagtgttatattggagattcttcaaatagccaccctttgtcttgatgacagctttgcacactcttggcattctctcaaccagcttcatgaggtagtcagtcacctggaatacatttcaattaacaggtgtgccttcttaaaagttaatttggggaatttctttccttcttaatgtgtttgagccaatcagttgtgttgatatacagaagatagcccaatttggtaaaagaccaagtccatattatggtaagaacagctcaaataagcaaatagatttgacagtccattattactttaagacatgaaggtcagtcaatacggaacatttcaagaactttgaaagtttcttcaagtgtgcagttgcaaaaaccatcaggagctatgatgaaactgtctctcatgtagaaaatagtaaaaataaagagtaACCgttgaatgagtaggtgtgtccaaacttttgactggtactgtataaaatGTGTATACAACAATAGGCTCATATTCAATATTAAAGATTGATTGCATGCATTTGCCAATGGTTATGGTGAAGAATAATGCACAAAGAGTTATGATACATTATCAAAGATAATCTTGTTCCTCATTGATATGAAACAGAAAAGGAGTCTTTTCTAAATAAGATCATGTAATATTGGAATTAAGTGTAAATCATCATTTGTATGTGACGAGTAACACTTGAATTATGCTT
>TU101863
agcttttcacactcttggcattctctcaaccagcttcacctggaatgcttttcaaacagtcttgaaagagtttccacatatgctgagcacttgttggctgcttttccttcactctgcggtccaactcatcccaaaccatctcaattgggttgagctcgggtgattgtggaggcctggtTACCTGATGCAGCATCTGATTTGggctcatcaaaccaaaggacagatttccaccggtgtaatgtccattgctcgtgtttcttggcctaaatggtgtcctttggtagtggtttctttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613766.2 False 1150 mRNA 0.45 7 82128619 82148847
XM_036986901.1 False 1149 mRNA 0.45 7 82128619 82148849
TU101849 False 2280 TUCP 0.43 6 82128644 82148774
TU101852 False 679 TUCP 0.46 4 82128644 82145474
TU101853 False 657 TUCP 0.39 4 82128644 82145452
TU101854 False 602 TUCP 0.44 4 82128644 82145397
TU101864 False 269 lncRNA 0.49 3 82128644 82141173
TU101861 False 861 lncRNA 0.33 2 82129613 82150441
TU101863 True 295 lncRNA 0.47 2 82149032 82163498

Neighbor

gene id symbol gene type direction distance location
LOC110530536 LOC106577203 coding upstream 124966 81910118 ~ 82005198 (+)
LOC110530526 LOC106577204 coding upstream 221220 81906132 ~ 81907399 (+)
fih1 LOC106577208 coding upstream 266724 81852648 ~ 81861895 (+)
LOC110530514 LOC106577205 coding upstream 293128 81824592 ~ 81884237 (+)
scdb LOC106577210 coding upstream 315705 81803814 ~ 81812914 (+)
LOC110530588 LOC106577200 coding downstream 23227 82172076 ~ 82179077 (+)
LOC110530624 cssa18h10orf11 coding downstream 307450 82456299 ~ 82916411 (+)
LOC110530670 NA coding downstream 1258802 83407651 ~ 83442131 (+)
LOC110530741 LOC106577189 coding downstream 1303399 83452248 ~ 83484011 (+)
LOC110530763 LOC106577187 coding downstream 1362268 83511117 ~ 83667671 (+)
G92498 NA non-coding upstream 5613 82122726 ~ 82123006 (+)
G92494 NA non-coding upstream 11340 82116836 ~ 82117279 (+)
G92445 NA non-coding upstream 64447 82063834 ~ 82064172 (+)
G92424 NA non-coding upstream 91701 82036467 ~ 82036918 (+)
G92396 NA non-coding upstream 118404 82009999 ~ 82010215 (+)
G92523 NA non-coding downstream 11183 82160032 ~ 82161672 (+)
G92524 NA non-coding downstream 14724 82163573 ~ 82163891 (+)
G92582 LOC106608577 non-coding downstream 37507 82186356 ~ 82186571 (+)
G92584 NA non-coding downstream 39391 82188240 ~ 82189878 (+)
G92609 NA non-coding downstream 156512 82305361 ~ 82305574 (+)
G91779 NA other upstream 249441 81877539 ~ 81879178 (+)
G91541 LOC106591086 other upstream 587219 81538331 ~ 81541400 (+)
G91064 NA other upstream 1362464 80765114 ~ 80766155 (+)
acoxl acoxl other upstream 2363260 79720751 ~ 79765359 (+)
G92575 trmt13 other downstream 32097 82180946 ~ 82181796 (+)
G93204 NA other downstream 939682 83088531 ~ 83089932 (+)
G93362 NA other downstream 1184417 83333266 ~ 83333576 (+)
G92621 NA non-coding downstream 159177 82322675 ~ 82322884 (+)

Expression


Co-expression Network