XLOC_019820 (limk1b)


Basic Information

Item Value
gene id XLOC_019820
gene name limk1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 40805336 ~ 40835069 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039001
gtttcagctcattttatttaagtagtttgaaagagcaaaaaataaaaaataataataataaaattgagtgtatgctagataagttggcggttcattccgctgtggcaaccgcagaataataaagggactaagccaaaaagaaaatgaatgaatgtgttgggAGCTTTTTTTGAAATTGAGGGAAAATATATAGCCAACAAGTGattaataatactgacttcaactgcattacATAGGCTACTACATACATATTAATGTCGttttgttgaatttatttaaattgcctttctcCTTCTACATCTTCCCTTTTAAAAGCCTGCATGTACAGTAACTGATCCACAAATGTGTGGCGAGTATTTCCAAAGCAACATCCCGATTTCTCCCGCAtgaagcacacgcacacacaaactgtCCTTCAGTCTCGGCGGTCATAGTTCATCACGAGGGCATCAGCAGGTGACAGGCTGCAGTACATACAGTAACTTAATCCTCCGACAGCATATTCATTCAGTCTGCACACCAAAAGTAGAGAAGGTGGGCTAAAGTTAGCAGGAGGGGGAGGGAATGTCTCGTTCACGGTTCAGACACTTGCCAGGAAGCAGAAGCGCAGCTCAGTATTGCAGATAAGAAAGAAAAGTTTTGAGTCTGTTTGCAAGTGTTTTCCTCTCCTCCCACTTCACTCCACCCATCAAATGAGTGGGGGACGGTGAAAAGACTAGTACAGCTAGTCACCACTATGATCAAGTCTAGTCAGGACCTGTATTGCCGGAGAGGAGGAAAGGCAAGGTGTTGTGAATGTAATTCTGTTCTTGCTGACTGGTACTATGAAAGAGATGGACAGTTCTTCTGTAAGAAACATTACTTGTCTCGGTTTGCGGAGCAGTGCTATGGCTGCACGGAGTCCATCAACACTGGTCCCATCATGGTGGCCGGGAAGAATAAATACCACCCGGAGTGCTTTCTCTGTGAAAGCTGTGATGTCTTCATTGGAGATGGTGATTCTTTCGCTTTAGTGGATTACACCAACTTATACTGTGGTCAATGTCATTACCAGAAGGTGTCGACACAGCATTTGGCAGCAAAAGGTTCACCGCTTCCTCATATGGTGACATCGATGTCATTTCCTCCCTCTGCAGAAAGCAGACAAGGTTTATTCTTCACTGTGGAGAAGAAAGACAAAGAGCATTTGGTCACTGTTTCTCAGCTGGACTTGCATAACCTGAGTGCTGAAGTTAAACCCTTGATCCATGTTGGAGACCGGATTCTTGAGATCAATGGAATTTCTGTTCACAACATTCCACTCAATGAGATCAATCTGGTGATTCATGATACAGAGCACTGGCTACAAATCACTATTGAACACAACCCTAAAGACCACATAAAACAGGAGGACCTGTCTGGCCTGCTGGGAGAAGAACTGGACCAGCCTGGAAATCTAGGCTTCTTTCCCCTTCCCAACAACAGACAAATAAGCCATCGATCCAAAAATATtttGCGCAGTTGCAGTATTGATAAAGTTCCATGTTTGCAACGACACGCTGCACTTCTTTCCCACAGAAGAGACATTAATCGTTCAGAGTCTCTGCGTTTTGACGCTAATGACAAAACGCAACGAATCTTCCGACCTTCCGACCTAATATATGGGGAGATTCTGGGAAAAGGCTGTTTTGGACAGGCCATAAAGGTGACGCATTTGGAGACAGGAGAGGTCATGGTGATTAAGGAACTACTTCAATTCGATGAAGAGACTCAGAAAACATTCCTGAAAGagGTCAAAGTAATGAGATGCCTTGAACATCCAAATGTCTTAAAGTTCATCGGAATTCTCTACAAAGACAAGCGGCTGAACCTTATCTCTGAATATGTGCAAGGGGGAACGCTGAGGGACACTATCCTGAAAATGGCCTCTGATCACCCTTGGAATCTTAGAGTGAGCTATGCTAAGGACATCGCTGCTGGAATGGCTTACCTACATTCAATGAACGTCATCCATCGGGATCTGAACTCACACAACTGCTTTGTCCGAGAGAATCAGACTGTGGTAGTTGCTGACTTTGGTTTGGCGCAACTTGTGAAGGACGAAAAGACATCTTCTCCTGGACAAATGTCCAAACTGAACAAGCTTGGGCGTAAGAAACGGTACACGGTGGTGGGAAACCCCTATTGGATGGCACCAGAAATGATTAATGGTAAAATTTATGATGAACGTGTTGACATTTTCTCATTCGGGATCGTGCTTTGTGAGATAATTGGAAGAGTATATGCCGATCCGGATTTCCTGCCTCGCACGCAGGAATACGGATTGAATGTGAAAGAATTCCTGGAGCGCTGTTGGTCTAAAGATTGTCCTGCTGCTTTCTTTCCCATTGCGGTTCTGTGTTGTGCACTGGAAGCTGAAAAACGTCCTGTTTTTGCCAAATTAGAGGAGTGGCTGGAGAATGTGATGATGCACTTGGAGATGGGACTTCCTCTGATGTCAGAACTGCTTAAGGTCCGACAATCCTTTTGGGAGAACCACAGCCAGCCAAGACCTTATGGAATTTCTTCCAAACCCATGGAGAGCTCAGCCTTTGGCAGAAGCTGA
>TCONS_00039002
TGTTTTCCTCTCCTCCCACTTCACTCCACCCATCAAATGAGTGGGGGACGGTGAAAAGACTAGTACAGCTAGTCACCACTATGATCAAGTCTAGTCAGGACCTGTATTGCCGGAGAGGAGGAAAGGCAAGGTGTTGTGAATGTAATTCTGTTCTTGCTGACTGGTACTATGAAAGAGATGGACAGTTCTTCTGTAAGAAACATTACTTGTCTCGGTTTGCGGAGCAGTGCTATGGCTGCACGGAGTCCATCAACACTGGTCCCATCATGGTGGCCGGGAAGAATAAATACCACCCGGAGTGCTTTCTCTGTGAAAGCTGTGATGTCTTCATTGGAGATGGTGATTCTTTCGCTTTAGTGGATTACACCAACTTATACTGTGGTCAATGTCATTACCAGAAGGTGTCGACACAGCATTTGGCAGCAAAAGGTTCACCGCTTCCTCATATGGTGACATCGATGTCATTTCCTCCCTCTGCAGAAAGCAGACAAGGTTTATTCTTCACTGTGGAGAAGAAAGACAAAGAGCATTTGGTCACTGTTTCTCAGCTGGACTTGCATAACCTGAGTGCTGAAGTTAAACCCTTGATCCATGTTGGAGACCGGATTCTTGAGATCAATGGAATTTCTGTTCACAACATTCCACTCAATGAGATCAATCTGGTGATTCATGATACAGAGCACTGGCTACAAATCACTATTGAACACAACCCTAAAGACCACATAAAACAGGAGGACCTGTCTGGCCTGCTGGGAGAAGAACTGGACCAGCCTGGAAATCTAGGCTTCTTTCCCCTTCCCAACAAC

Function

symbol description
limk1b Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in actin cytoskeleton organization and positive regulation of stress fiber assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm; neuron projection; and nucleus. Orthologous to human LIMK1 (LIM domain kinase 1).

GO:

id name namespace
GO:0051496 positive regulation of stress fiber assembly biological_process
GO:0006468 protein phosphorylation biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0043005 neuron projection cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-106 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in actin cytoskeleton organization and positive regulation of stress fiber assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm; neuron projection; and nucleus. Orthologous to human LIMK1 (LIM domain kinase 1).

Ensembl:

ensembl_id ENSDARG00000003022

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00039001 False 2584 mRNA 0.44 15 40805336 40835069
TCONS_00039002 True 806 mRNA 0.46 6 40820892 40834413

Neighbor

gene id symbol gene type direction distance location
XLOC_019819 zgc:162239 coding downstream 5932 40786804 ~ 40799404 (-)
XLOC_019818 apbb3 coding downstream 22943 40731111 ~ 40782393 (-)
XLOC_019817 pomp coding downstream 87658 40712757 ~ 40717678 (-)
XLOC_019816 arxb coding downstream 129112 40670996 ~ 40676224 (-)
XLOC_019815 pcyt1bb coding downstream 174686 40618615 ~ 40630650 (-)
XLOC_019821 elnb coding upstream 4788 40839857 ~ 40880353 (-)
XLOC_019822 yipf5 coding upstream 95108 40930177 ~ 40938382 (-)
XLOC_019823 plac8l1 coding upstream 181660 41016729 ~ 41070182 (-)
XLOC_019824 msx2b coding upstream 309845 41144914 ~ 41147818 (-)
XLOC_019825 CU570984.1 coding upstream 416362 41251431 ~ 41251548 (-)
XLOC_019814 NA non-coding downstream 225529 40528787 ~ 40579807 (-)
XLOC_019802 NA non-coding downstream 880892 39923770 ~ 39924444 (-)
XLOC_019801 NA non-coding downstream 893229 39905903 ~ 39912107 (-)
XLOC_019794 NA non-coding downstream 1443160 39359151 ~ 39362176 (-)
XLOC_019793 NA non-coding downstream 1468240 39328103 ~ 39337096 (-)
XLOC_019828 CABZ01034722.1 non-coding upstream 516476 41351545 ~ 41351665 (-)
XLOC_019831 NA non-coding upstream 755801 41590870 ~ 41593163 (-)
XLOC_019838 NA non-coding upstream 1208905 42043974 ~ 42048805 (-)
XLOC_019840 NA non-coding upstream 1315291 42150360 ~ 42156252 (-)

Expression


Co-expression Network