LOC110530588 (LOC106577200)


Basic Information

Item Value
gene id LOC110530588
gene name LOC106577200
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82172076 ~ 82179077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613789.2
GAATCTGCAAGTATTTTTTTAGACAGGCAAACATGTGACAGGTAGAGGGGTCTTTCGGTTGATAGGCTGGATTTCATTACATTGCAGTCTCCTTCAAGTCGCCCTCCAACCGGTGAAGTTTACTGCTAGCCTTATCTTTTACTGGTGTAATGGCTGTGCCTCCATCATATGGTGACCTCGGCAAGTCCGCCAAGGACATCTTCAGCAAAGGCTATGGGTTCGGCCTGGTGAAGCTTGATGTGAAGACCAAGTCCGGCAGCGGAGTGGAGTTCAAAACAGCTGGCTCCACCAACACAGACACCAGCAAGGTGGCGGGCAGCCTGGAAACCAAATACAAGAGGTCAGAGTACGGCCTGACCTTCACAGAGAAGTGGAACACTGACAACACCCTGGGAACAGAGATCACCGTCGAAGACCAGATTGTCAAGGGTCTGAAGCTGACATTTGACACAACCTTCTCACCAAACACTGGCAAGAAGAGCGGCAAAGTCAAGACCGCCTACAAGCGCGAGTTTGTCAACCTGGGCTGTGACGTTGACTTTGACTTCGCTGGCCCCGCTATCCATGGAGCGGCCGTCGTTGGTTACGAGGGCTGGCTTGCCGGCTACCAGATGACTTTTGACACGGCCAAGTCTAAGATGACCCAGAACAACTTCGCTGTGGGATACAAGACCGGAGACTTCCAGCTACACACCAACGTTAATGACGGTGTACAGTTTGGTGGCTCAATCTACCAGAAAGTGAGTCCAGCGCTGGAGACAGCGGTCAACCTTGCCTGGACTGCCGGCAGCAACAGCACAAGCTTCGGCATCGCAGCCAAATACCAGCTGGACAAGAGTGCCTCCATCAGTGCTAAAGTGAACAACATCAGCCTGGTCGGTCTTGGATACACCCAGACGCTGAGACCAGGTGTGAAACTCACGCTCTCTGCCCTGGTGGACGGCAAGAGCATCAACACTGGAGGCCACAAGCTGGGCCTGGGGTTGGAACTGGAGGCCTAAACTATCGTCACGGCGAAGGGGATAAGGGAATATCAGCAGAATCTGGCCTTATGATGTATTTCCAACTCAAACCAGCAAGAGGATGTACCATGGAAAGGGGCGTGTTCAGAGGCTACAACAACAAGAGAAAGAAGCACTACggtcttttattttttacagttttatgACGGTAGCTATTTCCGTCATTCTTTGGTGTACATGTTTGCTTTGTAGTTTCCATTAAAAGACACTTGCAGTGGGTCAGTAATTTATA

Function

NR:

description
voltage-dependent anion-selective channel protein 2-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0031101 fin regeneration biological_process
GO:0044070 regulation of anion transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG:

id description
K15040 VDAC2; voltage-dependent anion channel protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613789.2 True 1254 mRNA 0.51 9 82172076 82179077

Neighbor

gene id symbol gene type direction distance location
LOC110530572 LOC106577202 coding upstream 23227 82128619 ~ 82163498 (+)
LOC110530536 LOC106577203 coding upstream 168423 81910118 ~ 82005198 (+)
LOC110530526 LOC106577204 coding upstream 264677 81906132 ~ 81907399 (+)
fih1 LOC106577208 coding upstream 310181 81852648 ~ 81861895 (+)
LOC110530514 LOC106577205 coding upstream 336585 81824592 ~ 81884237 (+)
LOC110530624 cssa18h10orf11 coding downstream 277222 82456299 ~ 82916411 (+)
LOC110530670 NA coding downstream 1228574 83407651 ~ 83442131 (+)
LOC110530741 LOC106577189 coding downstream 1273171 83452248 ~ 83484011 (+)
LOC110530763 LOC106577187 coding downstream 1332040 83511117 ~ 83667671 (+)
LOC110530841 LOC106613168 coding downstream 1542782 83721859 ~ 83798056 (+)
G92524 NA non-coding upstream 8185 82163573 ~ 82163891 (+)
G92523 NA non-coding upstream 10404 82160032 ~ 82161672 (+)
G92498 NA non-coding upstream 49070 82122726 ~ 82123006 (+)
G92494 NA non-coding upstream 54797 82116836 ~ 82117279 (+)
G92582 LOC106608577 non-coding downstream 7279 82186356 ~ 82186571 (+)
G92584 NA non-coding downstream 9163 82188240 ~ 82189878 (+)
G92609 NA non-coding downstream 126284 82305361 ~ 82305574 (+)
G92621 NA non-coding downstream 143598 82322675 ~ 82322884 (+)
G92671 NA non-coding downstream 144414 82323491 ~ 82323707 (+)
G92511 NA other upstream 29489 82142124 ~ 82142587 (+)
G91779 NA other upstream 292898 81877539 ~ 81879178 (+)
G91541 LOC106591086 other upstream 630676 81538331 ~ 81541400 (+)
G92575 trmt13 other downstream 1869 82180946 ~ 82181796 (+)
G93204 NA other downstream 909454 83088531 ~ 83089932 (+)
G93362 NA other downstream 1154189 83333266 ~ 83333576 (+)

Expression


Co-expression Network