LOC110532782 (LOC106577197)


Basic Information

Item Value
gene id LOC110532782
gene name LOC106577197
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82291777 ~ 82301867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110532782
ACTCTGGTTAAATAGTAGACCTTCAATAATGTCTCTTTGGTGTTCACTCTATATAGCTGAATAGACACACTTCCAAAATGGCTCCAGATATCAAGATGTATTTCTGCTTTCAGCTTGTTCTTGCACTAACAGGCACAGGAATAGGATCTGCCCTGCCAGGTAAGAGCCACAGTGGAGGGAAGAACAACCTAGTGCTGCAGTATGTCGTGAACAACTCACTGAGAGAACATCCTGTCATGACCAAACTCAGACTGAAAACCCTTGAGGACCCATGGAGCATCATGCTGGTTGCTAGTGAACAAGCACAACTGATGGCAAATCTGGCCAAACTGATCAATGCCAGCAAAACCATTGAAATTGGGATGTACACAGGGTACAACACCCTGTTGGTTGTACCACAAAACCAGCCCCCAACTGGAgaccagtgcgcctccacagcccaggaAAGTCCTGTGCCAGCTCGCCGCACTTGCCGTGCTAAGGTTGTCATCTGTCCAGGACActttgtgccagctctacgctccagacctacagtgcgcctccacagtccggTACATCCTGTGCCAGCGCCACGCACCAAGCCTCCTGTGCGTCTCCCCAGCCCGGCCGGAGTCGAGGATAAAATTACTGTCCATCTTCAAATGTGTATAAAAACACTGGATGAGTTGATAGCTGCTGGGGAAGTTGGAACCTATGACTTTGTTTTCATCGATGCGGATAAAAGGAACTATGACAGATATTACGAGAAGTCTCTTGAGCTTGTGAGACAAGGGGGCATCATTGCCATCGATAATGTACTCTGAAGTGGTAAAGTGGTGGACCCTGCTCCTGATGACCTGACCTCCCAGGCTCTGGACAAGCTCAACAAGAAACTCCACACAGACCAGAGGATTGATCTGAGCATGCTCACTGTGGGCAACGGACTCGCCCTGGCCATCAAACGCTAACGATAACCCATGCTAACTCATACTAACCCGTGATGACTCATGCTTAACCCATGCTTA
>TU102059
GTCTATCACCTGTCTATCTAATTACACTTCCTTGACCTGTCTTTCTGACCTTCTGACCACAGGACACCTCACCTGTATCTCTGATCCCCCCACCTTCTTCCCCCAGGTACTCTGAAGTGGTAAAGTGGTGGACCCTGCTCCTGATGACCTGACCTCCCAGGCTCTGGACAAGCTCAACAAGAAACTCCACACAGACCAGAGGATTGATCTGAGCATGCTCACTGTGGGCAACGGACTCGCCCTGGCCATCAAACGCTAACGATAACCCATGCTAACTCATACTAACCCGTGATGACTCATGCTTAACCCATGCTTACTCCAAACCCACTGT
>TU102078
tgaggcacgacatttgCCCTAAGGAGCGTGTCCTCAGTTTaatgccacctgagtcagctctctgTACTCGTCCTGAGGAGCATGCTAGCCGTCTGTTGAAGACTGTACCGCCACGCACCAGGTCTCCGGTACGCTTCCCCAGCCCTGCATGTCCTGTGCAAGCTCTCCATACTCACTTTGAGGAGCGTGTTATCGTTCCGGTACAATGTGTGCCGGTTCTACGCACCGTAGAACTGGAgaccagtgcgcctccacagcccaggaAAGTCCTGTGCCAGCTCGCCGCACTTGCCGTGCTAAGGTTGTCATCTGTCCAGGACActttgtgccagctctacgctccagacctacagtgcgcctccacagtccggTACATCCTGTGCCAGCGCCACGCACCAAGCCTCCTGTGCGTCTCCCCAGCCCGGTATAAAATTGTGCGTTTTTCCACAATACTGGCATGTGTTGCTGGTCGAGTGAGGATtggaaaatgt
>TU102047
CTTCAATAATGTCTCTTTGGTGTTCACTCTATATAGCTGAATAGACACACTTCCAAAATGGCTCCAGATATCAAGATGTATTTCTGCTTTCAGCTTGTTCTTGCACTAACAGGCACAGGAATAGGATCTGCCCTGCCAGGTAAGAGCCACAGTGGAGGGAAGAACAACCTAGTGCTGCAGTATGTCGTGAACAACTCACTGAGAGAACATCCTGTCATGACCAAACTCAGACTGAAAACCCTTGAGGACCCATGGAGCATCATGCTGGTTGCTAGTGAACAAGCACAACTGATGGCAAATCTGGCCAAACTGATCAATGCCAGCAAAACCATTGAAATTGGGATGTACACAGGGTACAACACCCTG

Function

NR:

description
catechol O-methyltransferase domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110532782 False 1004 mRNA 0.45 8 82291792 82301867
TU102059 False 331 lncRNA 0.51 1 82291777 82292107
TU102078 False 491 TUCP 0.56 1 82293813 82294303
TU102047 True 366 TUCP 0.45 4 82295312 82301847

Neighbor

gene id symbol gene type direction distance location
LOC110530601 LOC106577224 coding downstream 3245 82275069 ~ 82288547 (-)
LOC110532773 LOC106600083 coding downstream 25774 82258046 ~ 82266018 (-)
LOC118966722 LOC106600083 coding downstream 46160 82232580 ~ 82245632 (-)
LOC118966721 LOC106577224 coding downstream 72909 82210502 ~ 82218883 (-)
LOC110530609 LOC106577197 coding downstream 93370 82190918 ~ 82198422 (-)
LOC110530617 zn503 coding upstream 137275 82439142 ~ 82442325 (-)
LOC100301648 LOC106577193 coding upstream 647742 82949609 ~ 83267163 (-)
LOC110530648 LOC106577192 coding upstream 970662 83272529 ~ 83374623 (-)
LOC110530724 anx11 coding upstream 1085130 83386983 ~ 83409300 (-)
LOC110532793 lox5 coding upstream 1374197 83676064 ~ 83701456 (-)
G92633 NA non-coding downstream 272 82246850 ~ 82291520 (-)
G92632 NA non-coding downstream 20458 82270655 ~ 82271334 (-)
G92631 NA non-coding downstream 68033 82200416 ~ 82223759 (-)
G92630 NA non-coding downstream 88520 82202855 ~ 82203272 (-)
G92637 NA non-coding downstream 102227 82188300 ~ 82189565 (-)
G92661 NA non-coding upstream 35 82301902 ~ 82302118 (-)
G92669 NA non-coding upstream 12456 82314323 ~ 82314551 (-)
G92642 NA non-coding upstream 21038 82322905 ~ 82323402 (-)
G92677 NA non-coding upstream 28746 82330613 ~ 82330927 (-)
G92689 NA non-coding upstream 35470 82337337 ~ 82337579 (-)
G92566 NA other downstream 130049 82160407 ~ 82161743 (-)
LOC110530475 eif4ebp2 other downstream 674468 81607478 ~ 81629726 (-)
LOC110532756 LOC106577174 other downstream 1110329 81175845 ~ 81449471 (-)
G91947 NA other downstream 1255654 81035575 ~ 81036138 (-)
G91943 LOC106577167 other downstream 1260434 81030832 ~ 81031358 (-)
G94201 NA other upstream 1182189 83484056 ~ 83485937 (-)
G94613 NA other upstream 1499465 83801332 ~ 83802471 (-)
LOC110531033 LOC106577242 other upstream 1856956 84157529 ~ 84256949 (-)
G94821 NA other upstream 1901620 84203487 ~ 84204464 (-)
LOC110532782 LOC106577197 other upstream 1706 82291777 ~ 82301867 (-)

Expression


Co-expression Network