LOC110530624 (cssa18h10orf11)


Basic Information

Item Value
gene id LOC110530624
gene name cssa18h10orf11
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82456299 ~ 82916411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986902.1
gtaccataggacggcgcacaattagcccagcgtcgtccgggtttggtcgtcattgtaaataagaatttgttcttagctgacttgcttGGTAGAATTAAAACATTATAATAATTGCTTAAAGTTCAGAATGTCTCCAAAACCATATCAATGTCTAGACAGAGCATTTGGGCAGAAAGGTACGTGGAATGACTCCAATGCAATGTAAGCAAGCAGGTCGGATCTGCTGGATACCAATTACAGGTGCATCAGGCTATAATTGCAAATTAATCAGGTTACCAGTATCAGCTAATGGTCCCCAGTGAACCCCAAACAAATAGTGTGTAAGTAGGCTAAGTATCCAGGAACAATAACTAAGAATATAGGCCTATGGCATTTTAGGTTAAGGACTGTCACCACCACTCTGAAATGCGACACAAGCGAATCCTGCCATAATACTAGTAATAGCGCGTTTCCGCATTGGATCAGCTGATTCGGAGGAAGTATGCGGAAGAAGTAAATTCGAAACCTCAAGTAAAGCAAACAAAATAGTGAACTTTTTTGGAAAGCTACTGACAGTAAAGTTTTACAATTGTATTTTAAAGCAGAAGAGTACCTGTACCAGTTCCACTCCAGTAGTTATTTCACAGAGGTAGCCTAGTAACTGAACTGTCATCATCATGGCATGCAGCGACTCTATGGTCACAATGAATGGAACCCAAGTTTCCTATATTGGACATGACTGTGAGGACATCCCAGAGTTCCTTGGAAAAAAATATGGATGCTTGGCACGACGGCTAGATCTCAGCTTCAATCAGCTAAGGTCACTGGCTGGCCTGAAAGCGTTCACTGGGCTGGAAGAACTGGTCGTCGACAACAATCTGCTCGGAAACGACCTCCAGTTGCCCAGGTTACCCACCCTCCACACCCTGACACTCAATAAGAACCAACTGACTGACATCGAGGCACTGCTGGAACACTTGGCGGAGGCAACTCCGTCGCTGCAGTACCTCAGCCTGCTGGGAAACGAGGCCTGTCCCAACCAGCTGGTCAGCCTGGACAAGGATGAGGATGACTACCAGAGATACAGGTACTTTGTTCTGCACAAGCTACCCACCCTAAAGTTCCTAGACACTAGGAAGGTTTGTAAGACAGAACAGCAGGAGGCTGAGGCACGGGGAGCCTTCATGAAGGTGGTTAAACCCAAGTCATCAGACATGGGGGCCCCAGGTGACCCTAAGTCTGAGAGTTCCTCCACACTCTACACCCCTCTACCCAGAGGCTCTAGAGACGGCAAGAACCACAAAGGTGTGCTCGCCAAGTGCCGTTACATCTACTATGGAAAGCATTCAGAAGGCAACCGGTTCATCCGCAATGACCAACTCTAATGGACcgacggagacacacacacacacacacacacacacacacatacacacacacacacacacacgcacacacgcgtacatgc
>TU102222
GGAGGAAGTATGCGGAAGAAGTAAATTCGAAACCTCAAGTAAAGCAAACAAAATAGTGAACTTTTTTGGAAAGCTACTGACAGTAAAGTTTTACAATTGTATTTTAAAGCAGAAGAGTACCTGTACCAGTTCCACTCCAGTAGTTATTTCACAGAGGTAGCCTAGTAACTGAACTGTCATCATCATGGCATGCAGCGACTCTATGGTCACAATGAATGGAACCCAAGTTTCCTATATTGGACATGACTGTGAGGACATCCCAGAGTTCCTTGGAAAAAAATATGGATGCTTGGCACGACGGCTAGATCTCAGCTTCAATCAGCTAAGGT

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein C10orf11 homolog isoform X2

GO:

id name namespace
GO:0030318 melanocyte differentiation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986902.1 False 1447 mRNA 0.47 7 82456299 82916411
TU102222 True 329 lncRNA 0.57 2 82456771 82458136

Neighbor

gene id symbol gene type direction distance location
LOC110530588 LOC106577200 coding upstream 277222 82172076 ~ 82179077 (+)
LOC110530572 LOC106577202 coding upstream 307450 82128619 ~ 82163498 (+)
LOC110530536 LOC106577203 coding upstream 452646 81910118 ~ 82005198 (+)
LOC110530526 LOC106577204 coding upstream 548900 81906132 ~ 81907399 (+)
fih1 LOC106577208 coding upstream 594404 81852648 ~ 81861895 (+)
LOC110530670 NA coding downstream 491240 83407651 ~ 83442131 (+)
LOC110530741 LOC106577189 coding downstream 535837 83452248 ~ 83484011 (+)
LOC110530763 LOC106577187 coding downstream 594706 83511117 ~ 83667671 (+)
LOC110530841 LOC106613168 coding downstream 805448 83721859 ~ 83798056 (+)
LOC110530850 LOC106577251 coding downstream 882020 83798431 ~ 83817516 (+)
G92796 NA non-coding upstream 21716 82434323 ~ 82434583 (+)
G92795 NA non-coding upstream 22006 82434039 ~ 82434293 (+)
G92739 NA non-coding upstream 84685 82371378 ~ 82371614 (+)
G92736 NA non-coding upstream 86934 82369048 ~ 82369365 (+)
G92693 NA non-coding upstream 116332 82339730 ~ 82339967 (+)
G93123 NA non-coding downstream 33227 82949638 ~ 82955415 (+)
G93248 NA non-coding downstream 242725 83159136 ~ 83159605 (+)
G93312 NA non-coding downstream 356123 83272534 ~ 83272768 (+)
G93315 NA non-coding downstream 362075 83278486 ~ 83278881 (+)
G93313 NA non-coding downstream 366295 83282706 ~ 83283084 (+)
G92575 trmt13 other upstream 274503 82180946 ~ 82181796 (+)
G92511 NA other upstream 313712 82142124 ~ 82142587 (+)
G91779 NA other upstream 577121 81877539 ~ 81879178 (+)
G93204 NA other downstream 172120 83088531 ~ 83089932 (+)
G93362 NA other downstream 416855 83333266 ~ 83333576 (+)
G94463 NA other downstream 1128900 84045311 ~ 84048149 (+)
G92961 NA non-coding downstream 253002 82711138 ~ 82711436 (+)
G92971 NA non-coding downstream 263516 82721652 ~ 82722203 (+)
G93013 NA non-coding downstream 326599 82784735 ~ 82785170 (+)
G93023 NA non-coding downstream 336931 82795067 ~ 82795648 (+)
G93050 NA non-coding downstream 369545 82827681 ~ 82828274 (+)

Expression


Co-expression Network