LOC110530850 (LOC106577251)


Basic Information

Item Value
gene id LOC110530850
gene name LOC106577251
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83798431 ~ 83817516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614140.2
ACTGTCAGGGATAGCGGGCTATGCCATTCACATGCTCTTGAACTAAAAAGGCTTCCGTATATTTTTGAGTGATTCGTGACGCACCAGCTCCGAACGGACAGGATCATTTCTACAGGCAAGATGGCGACTTCGGAGCCGGTAAGCGAGATCGAGAATGCACCTGAAACAGAAGAGCCCCAACCTGAAGTAATCCCCACTGCACCACCTTTGGTCACTGATTCCGAGCAGTACATCAAACACCCCCTGCAAAACAAATGGGCCCTGTGGTATTTCAAAAATGACAAGAGCAAAAGCTGGACAGAGAACCTCCGTCTCATCGCAAAATTTGACACAGTGGAAGACTTCTGGGCATTATATAACCACATACAGCAGCCCAGTAAGTTAGGCTTCGGCTGTGACTACTGCTTATTTAAGGATGGGGTGAAGCCTATGTGGGAGGATGACAAGAACAAGCTGGGTGGGAGGTGGCTGATGACCCTCAGCAAACAGCAGAGACAAATCGACCTTGACCGCTACTGGATGGAGACACTGTTGTGTTTAATTGGCGAGTCGTTTGACGAGGCCAGTGAAGACGTGTGTGGAGCGGTGGTCAACGTCAGACCCAAGGGAGATAAAATATCcatctggactgggaactgtcagaACAAGGAAGCCATCGTGGCGATAGGacaacAGTATAAAGAGCGCCTGAGTATCCCCATCAAGCTCCTGATTGGCTACCAGTCGCATGACGACACGTCTAGCAAGAGTGGTTCCACCACAAAGAACATGTACTCAGTCTGATCAACAACACCCACCCCCAACTCAACTACAAACCCactagagctgggcgatatggaccaAAATCCATATCACGATAAATTGACTGAATTATCACGATAAATTGAATGATAagtttataacattaatgtgcaccacagttattttttatattacccctacaactactactactactactactttgaATGTTGTTGctatcaattgtcccattaataGTTAATTAGCTAATTTATTTCATTTggaacttcacatttctctagtaggGTCCTATGGGTAATGAACGATATCAGCCAAATGTCCACAATAAGTGGTCAGTGTTGATACTTTTcagtttatcgtcccagctcaCTGCATCACCAACACATTCATACTTTTCAGTTGTCAACTACTGTTAGTGTCCTTCCTCTTTACAGACGAGAGAATTGTTCAAACGTGTACAAAGTTAGGGCCGCCTCCCTGACACCTGATTGTCCGGCTGGCTAAATGACGTATCTTGTACAGAAGAAAAGGAGAACAGCTGAAGCTGTTGGGATTTGAGCTAGAAGATCTTAAATAAATGACTTAATTTTAGAATTGGTGAGTATATGTGAATAATAATGCCAGTGGCTTCCCCCTACTCGTGTAGCTGGGAGAAGATGTTTAAGGCCTGGTtaaaaacaccttcctctgcTGTAAACCCAATTCCTTTTCTCATGCAGAGTTTACCACTTTCTGTTATGAAAAGCGTTTCTCACCAACCACCCAGGATAGGAAAAAATACCAGATTAATTTACTCAGATTTTAAAGGGTAGCCAGCATTTTAACCTGCTTTACCTGGAGGTGTTTAGCATGATAAGGGATTGCAGATGCATCTGCTACAGAAAAGACAACAGTATCAAAAAAGAAAAACGTTTGTAAAGAATAGTAGTGGTCACACGGTCTTAAGTGTGAACATTTTGGAAGAAAGACCACGAAGTTCCAGCCATGCTGGGATTGAGGATTGTTTGCTTGTAAAACTTTTTTTCTCCCCCCTTTCCCTATTTATTTATGATTATATCCATTTGAGGTTAAACTACTTAGTTGGAGGGCAAccattaaaaaaaactaaatttctctacactattttttttttttttttttgttattgagGATGTTAATGACATGGACTACTGCTTAATATAGAACCTTTTTTACAGTGTATCATAGCAAGTAAAGATGCCTGGACAAGTTTTAGGTCTGCTTCTCACCGTTTTCTTCCTGTAACATTTCGCACTACTCTCTGGGGCTGGTGCGAGTGGAGAAGAAAGGATATCTTCCTCTCTATCCATCGTTAAATGATTTTGCTCATAATGTATCTTAATGTATATTACCTTCTTTCAAGTAAAGGTTAAGTGCTTTGCATTAAAACCAGAACCACGCCGTC
>XM_021614147.2
ATTTCTACAGGCAAGATGGCGACTTCGGAGCCGAATGCACCTGAAACAGAAGAGCCCCAACCTGAAGTAATCCCCACTGCACCACCTTTGGTCACTGATTCCGAGCAGTACATCAAACACCCCCTGCAAAACAAATGGGCCCTGTGGTATTTCAAAAATGACAAGAGCAAAAGCTGGACAGAGAACCTCCGTCTCATCGCAAAATTTGACACAGTGGAAGACTTCTGGGCATTATATAACCACATACAGCAGCCCAGTAAGTTAGGCTTCGGCTGTGACTACTGCTTATTTAAGGATGGGGTGAAGCCTATGTGGGAGGATGACAAGAACAAGCTGGGTGGGAGGTGGCTGATGACCCTCAGCAAACAGCAGAGACAAATCGACCTTGACCGCTACTGGATGGAGACACTGTTGTGTTTAATTGGCGAGTCGTTTGACGAGGCCAGTGAAGACGTGTGTGGAGCGGTGGTCAACGTCAGACCCAAGGGAGATAAAATATCcatctggactgggaactgtcagaACAAGGAAGCCATCGTGGCGATAGGacaacAGTATAAAGAGCGCCTGAGTATCCCCATCAAGCTCCTGATTGGCTACCAGTCGCATGACGACACGTCTAGCAAGAGTGGTTCCACCACAAAGAACATGTACTCAGTCTGATCAACAACACCCACCCCCAACTCAACTACAAACCCactagagctgggcgatatggaccaAAATCCATATCACGATAAATTGACTGAATTATCACGATAAATTGAATGATAagtttataacattaatgtgcaccacagttattttttatattacccctacaactactactactactactactttgaATGTTGTTGctatcaattgtcccattaataGTTAATTAGCTAATTTATTTCATTTggaacttcacatttctctagtaggGTCCTATGGGTAATGAACGATATCAGCCAAATGTCCACAATAAGTGGTCAGTGTTGATACTTTTcagtttatcgtcccagctcaCTGCATCACCAACACATTCATACTTTTCAGTTGTCAACTACTGTTAGTGTCCTTCCTCTTTACAGACGAGAGAATTGTTCAAACGTGTACAAAGTTAGGGCCGCCTCCCTGACACCTGATTGTCCGGCTGGCTAAATGACGTATCTTGTACAGAAGAAAAGGAGAACAGCTGAAGCTGTTGGGATTTGAGCTAGAAGATCTTAAATAAATGACTTAATTTTAGAATTGGTGAGTATATGTGAATAATAATGCCAGTGGCTTCCCCCTACTCGTGTAGCTGGGAGAAGATGTTTAAGGCCTGGTtaaaaacaccttcctctgcTGTAAACCCAATTCCTTTTCTCATGCAGAGTTTACCACTTTCTGTTATGAAAAGCGTTTCTCACCAACCACCCAGGATAGGAAAAAATACCAGATTAATTTACTCAGATTTTAAAGGGTAGCCAGCATTTTAACCTGCTTTACCTGGAGGTGTTTAGCATGATAAGGGATTGCAGATGCATCTGCTACAGAAAAGACAACAGTATCAAAAAAGAAAAACGTTTGTAAAGAATAGTAGTGGTCACACGGTCTTAAGTGTGAACATTTTGGAAGAAAGACCACGAAGTTCCAGCCATGCTGGGATTGAGGATTGTTTGCTTGTAAAACTTTTTTTCTCCCCCCTTTCCCTATTTATTTATGATTATATCCATTTGAGGTTAAACTACTTAGTTGGAGGGCAAccattaaaaaaaactaaatttctctacactattttttttttttttttttgttattgagGATGTTAATGACATGGACTACTGCTTAATATAGAACCTTTTTTACAGTGTATCATAGCAAGTAAAGATGCCTGGACAAGTTTTAGGTCTGCTTCTCACCGTTTTCTTCCTGTAACATTTCGCACTACTCTCTGGGGCTGGTGCGAGTGGAGAAGAAAGGATATCTTCCTCTCTATCCATCGTTAAATGATTTTGCTCATAATGTATCTTAATGTATATTACCTTCTTTCAAGTAAAGGTTAAGTGCTTTGCATTAAAACCAGAACCACGCCGTC

Function

NR:

description
eukaryotic translation initiation factor 4E-like isoform X2

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03259 EIF4E; translation initiation factor 4E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614140.2 False 2185 mRNA 0.42 7 83798431 83817516
XM_021614147.2 True 2065 mRNA 0.41 7 83798536 83817516

Neighbor

gene id symbol gene type direction distance location
LOC110530841 LOC106613168 coding upstream 375 83721859 ~ 83798056 (+)
LOC110530763 LOC106577187 coding upstream 130760 83511117 ~ 83667671 (+)
LOC110530741 LOC106577189 coding upstream 314420 83452248 ~ 83484011 (+)
LOC110530670 NA coding upstream 356300 83407651 ~ 83442131 (+)
LOC110530624 cssa18h10orf11 coding upstream 882020 82456299 ~ 82916411 (+)
zgc:110319 nfu1 coding downstream 23240 83840756 ~ 83851899 (+)
LOC110530876 LOC106577249 coding downstream 35050 83852566 ~ 83889994 (+)
LOC110530893 LOC106577247 coding downstream 86266 83903782 ~ 83951597 (+)
zgc:154058 LOC106577246 coding downstream 159602 83977118 ~ 84031022 (+)
LOC110530965 fam213a coding downstream 265474 84082990 ~ 84097350 (+)
G93525 NA non-coding upstream 21530 83776547 ~ 83776901 (+)
G93524 NA non-coding upstream 22025 83775980 ~ 83776406 (+)
G93523 NA non-coding upstream 23381 83774552 ~ 83775050 (+)
G93522 NA non-coding upstream 25510 83772374 ~ 83772921 (+)
G93519 NA non-coding upstream 33300 83764216 ~ 83765131 (+)
G94401 NA non-coding downstream 54992 83872508 ~ 83935450 (+)
G94440 NA non-coding downstream 131189 83948705 ~ 83948936 (+)
G94449 NA non-coding downstream 149035 83966551 ~ 83966754 (+)
G94451 NA non-coding downstream 150364 83967880 ~ 83968109 (+)
G94452 NA non-coding downstream 155755 83973271 ~ 83973671 (+)
G93362 NA other upstream 464855 83333266 ~ 83333576 (+)
G93204 NA other upstream 708499 83088531 ~ 83089932 (+)
G92575 trmt13 other upstream 1616635 82180946 ~ 82181796 (+)
G94463 NA other downstream 227795 84045311 ~ 84048149 (+)
LOC110532822 LOC106577256 other downstream 565241 84373236 ~ 84410052 (+)
G95702 NA other downstream 1322624 85140140 ~ 85141006 (+)
G95821 NA other downstream 1417305 85234821 ~ 85235394 (+)
G96133 NA other downstream 1820231 85637747 ~ 85638055 (+)

Expression


Co-expression Network