LOC110530866 (nfu1)


Basic Information

Item Value
gene id LOC110530866
gene name nfu1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83814162 ~ 83851846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614159.2
GGAGCACTCTGCAGAGCTTGGAGAGGGGAAATCCAGGGTCCCCACCCCCAACACAGGCTTACCAGGGATGAACTTCAAGCTCCGTGGGTTTGGTGTGTCCTGTGTCTGAATGGACAAGTGTCGCACTGAAACATAATGGACAAGGTGGTGCCATTTGTGTGGATGACTGACTCTGCTGAAGGAGGAATCTCACAGTGCCAGACTGAGACCGACAGTGTCTGGACCCGGAGCGTCCCCACtgtacttctactgctgctggtCTCTCTCACCAAACTACCAAGACATGGTCCTCTGGAGTctactccccatctccctctccttagTGTCTCTCATTGGAACCTGGGTGACGTATGGCCTGGCGTACAGCTATGACCATGTGTGTTCCCTCAACAACTGGGCCCCTGGGAACCACTGCAGAGACAATACATCAATAGCTTGTTGTCAAGTCCCAACCATAAGCTCGAGTGGAACAAGCTTACCAGAAAGCTCATTGTTCACAGCCACCTTTAATGCGGGTTCATTTCTGTTTATGGTGTTCTGTATCTTCCACCATGCTCACATCTTGGAGAGGAACAGTGTCCACTCCATGCTCAGTAGAATCGCCCTGGTGTTTGGTGGAGTGGCGGCTGTCGGGGCCTTTGTGGCTGGGAACTGCAACcccgAGTACCTGAAGCTGGCCCATTACCTGGGGGCTGCGGTGAGCTTCCTGTGTATCTGTTTCTATAGTCTGCTCCTCACAGTGCTCACAAGGAAGTGTGTTCTGACCCAGATGGAGTGGTTCCTCTACCCTGCACGGGTCACCTCTACTGTGGTCCAGATCATTGTCACCATTGGCTACACCATCTTGTTTGTACAGGAGGAATACCTGTACAAGCACTCAGCTGCCGTGTTTGAGTGGATAATGAGTGTCAATCTGGAGCTGTTTGAGCTCAGCTTTGCTGTGGAGTTCTGTTttttctcctcctccatgttgtCCACGCTGCTGGTGAAAAGAGATGAGGAGAAGCCTATCCTTCTAGCCTGAGGAGAGAAGATGCTGGGCTGGCTACTGTAAGAGACACTGGGGTCTAGTTCATTAGACATGAAATGGAAGAAACCGGtccgaaacagagagagattagctGGACCTGATtgccattttaaaacattttgttacGGTGTGCCTTAATGACACGAGCCAGTAGTTTGCAAACTTTTCTTTGTTGTGACAGATCTAAAGCTTGTGGAATTGGACCCACCAAGTAAAGGGAACAATTGTTTGTAACCAGGACCCAGTCTGGCTGCGATCAAAAACGACTCTGAGTTGGCCACGACCCACCGTTTGGGAAACACTGACGTAGGGGCATCATGAGGATAATATATCTGACCTTTGACTTTGCTCCCGGACCAACTCTCATTTTTgaggattatttatttattctatttttttttatcaggGCTGACATAGTTCTTATGCAGCCCCTAAAGAAAAACAGAAAGAGGAGTTCTTACTGTCACACCAAATCAATGTACTTCGTATTGGGGAGTATTTCTGGATGCTTTCAAAAGGGAAAACTTGATCCTACAATCTTCATTGCCACTGATGAACCAATACCAGAATACCTCAGCATTTGAGTAGTAGTCACTGTAAGCACTAAAGTCACTATTTCTGTTCCTAGGTCCTGAATTGATCAAAGTGGCATTTACCATTTGATGGGCCATGGAGAATGTTCAATGATGTTTGTTAGCTCTTTTTTCAATATGTTGTCTATTTGTGTAAAACATGACATCTTGGTGGCATCACTGTGCTATTGAAGTATACCAGTTAACAACAACATAATTACTTGTTGtataaaaatgtaattgtttGCAAAGTAAAGTATTGAAGGGTAATGTTGCGACGGAATCTAAGCCCAATAATCTCTTCTGACAGCCTTAACATTAAACAGATGATCAAGTAGCTGATGTGTTTCTGGGTGGCGAGAAGAGAAGCCAGTGATGATTGTAAACCTGCGATACAACAGGTGTGAAGGAGGCAGGTGTGGCGGTTGATTAATGAACAGCCATCTTTGTATTTGTGATAGATCATTCTGAAAAGCTTTCTGGAGGCAGAACAGTTGGTTGTACTACTGCATTCCTGTCAGATGAGAGAAAAACCAAAACATAAACAATCATTTATCCAGAAA
>TU104315
GTGGTTCTGGTTTTAATGCAAAGCACTTAACCTTTACTTGAAAGAAGGTAATATACATTAAGATACATTATGAGCAAAATCATTTAACGATGGATAGAGAGGAAGATATCCTTTCTTCTCCACTCGCACCAGCCCCAGAGAGTAGTGCGAAATGTTACAGGAAGAAAACGGTGAGAAGCAGACCTAAAACTTGTCCAGGCATCTTTACTTGCTATGATACACTGTAAAAAAGGTTCTATATTAAGCAGTAGTCCATGTCATTAACATCctcaataacaaaaaacaaaaacaaaaa
>TU104314
ACAAAGACAGCAAAGCTATATCAAAAGGTTATTCCCACAAGTTTTGGTTTCTGAAAACAAGAGCAATATAATAATACAACGAGATGATTCCACGAATGGGACAAAATAACCATTACATTTTCCTTTGTGATACTAGTATGATTCGGACTTCTGTATCAGCCATATGAGATTGCAGCTGGAACTGTTACAATTGCAATGCATATACAAGTGAATGGGTGATTAGTATCCATTCAAAGAACTTGAATCATTGCGCAACATTTATCACAGTATTTCACATAAAGCTTTCTTTAAGAGTAGATGTACTGCAATCTATATGATGAATATAAATTAAtcttggttaacccagaactaaagtatTGTGGAATTGGTCAGATGCTCgattaagttctgggtccatacgTATTAGGAGAAGATACAGAACGAGAATCGGAACGAAGAGCTCCACTCTCTCTGCAATTTACAGGCAAGTCAAAATGGGCCGaatgtcccctctccttccaaaATGTGAAAGATGCCAACACCTACAAAATCGTGATgtgtccaaataaccagtgaaGAAAAACCCAAGCAACAGAATTAATGCTGCTCGTTATGTCATGCATCCCGTTGACATATCTATGATACCATTTGTTTACGTCGTCTCTCCACGAGAGATTAAATATAAATGAGCATGTGCCCATGCCAtaaatgtaaatgtgttaatgtgatTACTATGTGTAGACTCCTGAACAATGCATTCACAAAGAAACATATACAGCTAAATCATTTTGTCGTTTTAACTGTGCCATATCTTGTGATCATTTCATATAAACAATTGGTCATGCTTGGCCTAGGGATAGATTTAAACCATATCCCTTAACTCAAACCATCACAGAATGTCCTTTCATcagagaatatatatatttttttaaacatatgaGGGTAAATTTGTAACTCAACCTGCaaagaaataaatataaaatatataacatAACTGCCTTCTTCAGAGTTTTCGGCCTTTACAATGGAAGAGAAACAGTAtaaatgtgtcagtgtgtggccTGGCTTCATTGTAATAGTAATATACAGTATTTGAGTAAATGAAAGACAAAAACAACAGCCTACAGCACACTACAGTTGGTATTTTGAAAGGGCAATGCTGAATATTATTTTAAAACATGAACATTGCACTAAGGTAGCGGAAGCAGTATCTACCTGGTTTGCAAGGCTTCTATACAACAGACTTTATCTATAGGCCTGGGGGCTGACAGAAGTTTTATATGTCTCCTAACTTGCGTTCCAACTCGGTGAAAACCGTTGCATTTACATGATCCACTTCATCTTCCACCTGTTCCACGTCATCCACCTCAGGGATGTAGAACTGCAGCATGTTCTGGATGCCATTCTTCAGGGTGACAGTAGAGCTGGGGCAGCCGGTGCATGAGCCAACCAGCTTCAGCTTCACCGTGCCGTTCTCAAAGCCCTTGAAGATGACATCACCGCCATCCTCCATCACCGTGGGCCTGATCCGTGTATCTAGAAGCTCCTTTATCATTGAAACAATTTCATCATCATCTTCAgagtgaTGCTCTCATGGTGGGTAACCCCAGTGGTTATGGGGTCTCCACTGTCAAAGAACTTAGTGATAGCATCCATGGCATGGTGCTTGATGTCCGTCCACTCCACATCATCATCTGCCTTGGTCACTGTGATGAAGTCAGGACCATAGAACACACTTTTCACTCCTTCGATTCCAAACAGGTCCCTGGCTAAGGAGGAGCACTCTGCAGAGCTTGGAGAGGGGAAATCCAGGGTCCCCACCCCCAACACAGGCTTACCAGGGATGAACTTCAAGCTCCGTGGGTTTGGTGTGTCCTGTGTCTGAATGGACAAGTGTCGCACTACGAACTGTGGGGGTCCAGTCAGAGGCAGAAGTTGAACTTTTCTGTAGTTCGGGCCAATGCATTGTGTGTGGAACTGGTTTCTCGTGTTGATTGGAAACCTAAAATGTGATGTATTTCGTGACTGAATCAACCGTTGAAGACTCCATCTTATGCGGGCAGccatttcatttgtttttaaagtgAGGACCCAAGACACAGCTGGCTTCACATATCCTGTTTGAAATAGATTCCAATTGCTCCACAATTACCTTTTTAATCGTTAGTTTGATAAGTAAATGTTCTTATTCATTACAATAAACAAACATCAATTCAAACTATATAGCTTATAGATACTCTCGAAGTACAAATAttgtctcccgagtggcgcagtggtctaaggcactgcctatgtgcta

Function

symbol description
nfu1 Predicted to enable 4 iron, 4 sulfur cluster binding activity and iron ion binding activity. Predicted to be involved in iron-sulfur cluster assembly and protein maturation by iron-sulfur cluster transfer. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 1. Orthologous to human NFU1 (NFU1 iron-sulfur cluster scaffold).

NR:

description
NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614159.2 False 2165 mRNA 0.46 8 83826949 83841893
TU104315 False 295 lncRNA 0.45 2 83814162 83817510
TU104314 True 2278 lncRNA 0.41 8 83840597 83851846

Neighbor

gene id symbol gene type direction distance location
LOC110530770 slc25a16 coding downstream 105035 83713352 ~ 83721914 (-)
LOC110532793 lox5 coding downstream 125493 83676064 ~ 83701456 (-)
LOC110530724 anx11 coding downstream 417649 83386983 ~ 83409300 (-)
LOC110530648 LOC106577192 coding downstream 452326 83272529 ~ 83374623 (-)
LOC100301648 LOC106577193 coding downstream 559786 82949609 ~ 83267163 (-)
si:ch211-198a12.6 LOC106577248 coding upstream 109164 83951057 ~ 83956958 (-)
LOC110532804 NA coding upstream 124272 83966165 ~ 83967505 (-)
LOC110530927 LOC106577245 coding upstream 189661 84031554 ~ 84104730 (-)
LOC110530947 LOC106577244 coding upstream 255734 84097627 ~ 84110671 (-)
LOC110531009 NA coding upstream 280798 84122691 ~ 84126832 (-)
G94374 NA non-coding downstream 28938 83794650 ~ 83798011 (-)
G94372 NA non-coding downstream 35383 83791307 ~ 83791566 (-)
G94370 LOC106577185 non-coding downstream 40552 83786173 ~ 83786397 (-)
G94369 NA non-coding downstream 41234 83785368 ~ 83785715 (-)
G94368 NA non-coding downstream 42533 83784093 ~ 83784416 (-)
G94656 LOC106577249 non-coding upstream 43209 83885102 ~ 83885935 (-)
G94655 NA non-coding upstream 46204 83888097 ~ 83889981 (-)
G94630 NA non-coding upstream 107009 83948902 ~ 83950168 (-)
G94693 NA non-coding upstream 116715 83958608 ~ 83958847 (-)
G94702 NA non-coding upstream 126934 83968827 ~ 83969103 (-)
G94613 NA other downstream 24478 83801332 ~ 83802471 (-)
G94201 NA other downstream 341012 83484056 ~ 83485937 (-)
LOC110532782 LOC106577197 other downstream 1525102 82291777 ~ 82301867 (-)
G92566 NA other downstream 1665206 82160407 ~ 82161743 (-)
LOC110531033 LOC106577242 other upstream 316930 84157529 ~ 84256949 (-)
G94821 NA other upstream 361594 84203487 ~ 84204464 (-)
LOC110532813 LOC106613040 other upstream 449867 84291760 ~ 84331700 (-)
G95494 NA other upstream 886971 84728864 ~ 84729423 (-)
G95624 NA other upstream 1137840 84979733 ~ 84980272 (-)

Expression


Co-expression Network