si:ch211-198a12.6 (LOC106577248)


Basic Information

Item Value
gene id si:ch211-198a12.6
gene name LOC106577248
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83951057 ~ 83956958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614203.2
CTACAATGCGTTGTTGGCGCCAGAAGATCAGTGGCGCAAGCTctacagaaagcgagagaggaaGACATTGCAGACAGTCGCAAGCAAGCATCCAGGAGAAATCGGTTGTGCAGAGCCCTTAAActttttgtttcatcataccCCGAAGACAAAGAGGTCTCTGACTGACTGAGAATCTAAGCACTACTACCACCAACCCTGTTGTGCTAGCCATACTAAGTGGATCTCTTCCTACCCCAAGTCCCTCTAAGCTTCCCGTCCGGCTCTAAAACGGAGGTCGTCGGGCTGGAGTGTGTTCTCATGGCTGATTCAGAGACTGAGTGTGACACACCCGGCCTTGACACGCTGGGGTCGGAGTGTGTCATTGCCCACAGCCAGGTTGACCTGCATTATGCGGCCGAGACGGAGATCATGACAGAGGAGAAACGTGGCCTGGAGCTGGAGATCCACGGGGCAGACCTGGCCAAGATCCAAGGGCTCACTGCCGTGGCCTGTGTGGACGCCATCGTCACAGAGACTGACCACGACTACGTGACCAAGCCGGACCACCACGGGGAGATCCAGTGCTTCACCATGGGGGGCGAGGGCAAAGGGGAGGCGCTGCTGGGAGAGGTGCTGCTAAAAACAGAGACTGAACATGTGGTTAAGGTGGAGTCGGACCACGTGGGCGGCGAGCTGACGGTGGAGTCCGAGAATGGTGTGGTTATCCACGAGGCCCACGGCCTGCAGTGCAACGAGTGCGGAGAGATCTTCGGCAGCATGGCCGACCTGCACCAGCACTTTGAGATCCACAAGGCCACCAACCCTTACATCTGCGTGCACTGTGGCGATAGCTTCGCTGTGGAGTCGAGCCTCAAGCAGCACATGAAGATCCACATGAAAGAGAAAGCGTATGCCACCACAGGTGTGGAGATGGTGGGAAAGGGGGTGATTGATGCTTTCAATCTAAAATCTCACCAGATGATCCACAGCCCGGAGAAGCCCCACCGTTGCTCGGAATGTGGCAAGAGCTTTGCGGCAGCCATCACCTTGCGGGAGCACATGAAGATGCACTCAGAGGATAAGCCGTATAAGTGTACCCAGTGCAGGAAGAGCTTCATCCGACGGCGCCACCTCAAGAAGCACCAGGAGCTCCACGCCAGGGAGAAGCCCTTCACATGTTCCCAGTGCGGAAAGGGCTTCACCACGGCCTCTAGCCTGAAGCAGCACCAGAAAACCCACGCAGGGGACAAGCCTCACCGCTGTACACAGTGCGGGAAGTGCTTTGCCGCAGCCGCAACTCTGCGGGAGCACCAGCGCATCCACTCTGGGGAGAAGCCCTACAAGTGCAACCAGTGCAGGAAGAGCTTTGTCCGCAAGCGCCACCTTAAGAAGCACCAACTGGTCCACTCGGGTGGGAAACCCTACTCCTGCGCCCAGTGCGACAAGAGCTTCAACCACTCCTCCTCGCTCTCCCGGCACCACAAGGTCCACCTGGAAGCACGcatctactcctctcctccccagggCAAGGCCTTCTCCTACGGGTCCACTATGAAGCAGCAGTCAAGGATGCACCAGGGGGGAGGCGCGGGAGACAAACCGTACACCTGCAACCACTGCGACAAGAGCTTCAATCATTCCTCCTCCCTGTCCCGCCACCAAAGAGTCCACTCGGAGGGGAAGAGCTACACCTGCGGCCACTGTGGGAAGAGGTTCAACCACTCCTCTTCCCTGTCCAGGCACCAGCGTGTTCACCAGgagcagaagcagcagcagcaacaggtaGTGGTGCAGCAACAGTACAGCGCCGTTCCCTCGACGAAGGGATTCCCCCACACCACCATCCTCAAACAGCGTATCCTGGCCAGCGAGAAGCCATACAggtgctcccagtgtggaaaagGCTTCAACCATTCATCTTCTCTCTCCAGGCATCATAGAATCCACATCGACCAGTGAGATCCCTACACACACCTACTCtgtctttcactcacacacagccCTGACCGACACCCACCCCTGTGATGTTTCTGTTCTACCAATCGGTCCCGAGCTCCAGACGACAAGGACTACAGCCAATAAAACCCGGCCAGCTCTCCCAGTAACAGTGTAGTGGTCAGGGGCAGAGTTTAATTTGTCTCTGTGTGGAGCAGTCGATACAAATGGACGATGACACAACCAAAATATCCTTTTCGAAAGGAGAGAAATAAAAGTTCTAGCCTGAACTTATAATAACCCTTTACAGACGAGCTGTTGAAGTTGGGTTGCTTGACAAGTTCCTAGGACTTTCAGATCAGTTAGTTTTGAATAAATTGTGTGATAGACATTTTGAATGAGCCTGTGTTTCTCCTTTGTGATTGTGATTCTTTGCTCCAGAACCCCCTCTTTTTGATTGCTTTTAAAGAAAAGAAAAATGATTTGATAATCTAGATAAATGTTACCTGACTAACGGAGAGAAACACTTGTCGTTATTCCACTCGTGCATAATTCTCCCCCTACTATATGGAGTGCTTTTCCGATCTAACCCTCGTTGAGGTCAATCTCCCACTCTTGGCTACTGATGCAACTTGCGATCAAGTCATACTGTCTTGATGGCATAAATTAGCAATTTTTCAAATGTGCATTTTTTTTAACCCATCTTACCACCTGTAAACTCATGGGGGGAGACAGATCCTATGTAAATAATTGTTGATTTATCCTTTTTTATATATCTGTATAGGTGACTACTGTGCAGTTTTGTTCCAGaaattagatgtattttttttatagtaACATCCACATACTCTCACCTCCCTTCTCCAGATTCCTTTTCATTAATTGTTTTTGTTACAGAGCTACCAGGAAATGTTGCTACTGCTCTCGTATGTACATACTGTCATATCTGGGTTTCCATCCAGTGAGATGCAGCTCCATGTGGATGGGTATGTACCCAGTGATGTGGTCTGTATTGTACAGCTAAAGTGTGGAGAGCAATACTGCCTCTGTATTTTGGGATGCAATTAACAGTCACGAAAAGGAGAAATGGACAAAATCAccgttaaaaaaaataaactatCTGGTAGCATTATCTGAAGTTGACTTGCGTCTGTTTTTAATTGATTCCCTATCCAGTTCTTTCAGCACCAAATGTAACATCATTATTAGATAGACGATGGACTCTGATGTTCAAGAGTTATTTCTTTACTCATTCAATTAGCAGTGTATAGAATTATAGTTGATTTCACTGAATGGTTTTGGGAGTAGAAGTGCCCAAATTGGACAGTGTAATAATAGGTTGTGTTTACTACCTATCTAGACGACTATAGGTTGCTTTTAGTTATCTAGACGACTATAGGTTGCTTTTAGTGACACCACTCTTGACTTTGAACTTCCAGGTTTTCCAAATTCCATGGGATTACGCCTTTTTATTTACTGTTCTGTGTatacattttaattttttttttttttttttaaataccgtTTGGGTCATTTTGAAAGGGAAGAATAGCTATTatactgttttaaaaaaaataaaaaatatgggaAGGAATTTTTATTTTGAGCAGACTTtattatttttacccctttttgaATAACGATAGCATAGGCCTATTCCTTGTCAGATAGGTGCCTTACTGCATGCTGTAGAAATGTATGCCGAGCTGtcataaaacaaacaaaaaaacttaTGGGTTGGCAACTCCTTTATTCTTAACTTACACCCAGCATTTTAAGTTGATGTCATTACTTTATTATTTTTGGGCTTCTATGTACATTGTGTTTGCACACTGTTACATCTTCATTGTCATTTAATTTTTTCTCCTGTCTTTGTTGATTGGCATTCAATGTAGATTTTCTTCAAGGTTGAATTAAGGAAGTGAGAATGTTTTTGATCCCTATATGGCTCTGATAACTGTAGAGGTCCCACCCAGCTCCACCTCTCCCCACATTTCTGACTGCTACATATATGGATAAATAAAAGTTGACTGTCAACA

Function

NR:

description
zinc finger protein 883-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614203.2 True 3956 mRNA 0.47 2 83951057 83956958

Neighbor

gene id symbol gene type direction distance location
LOC110530866 nfu1 coding downstream 109164 83814162 ~ 83851846 (-)
LOC110530770 slc25a16 coding downstream 229143 83713352 ~ 83721914 (-)
LOC110532793 lox5 coding downstream 249601 83676064 ~ 83701456 (-)
LOC110530724 anx11 coding downstream 541757 83386983 ~ 83409300 (-)
LOC110530648 LOC106577192 coding downstream 576434 83272529 ~ 83374623 (-)
LOC110532804 NA coding upstream 9207 83966165 ~ 83967505 (-)
LOC110530927 LOC106577245 coding upstream 74596 84031554 ~ 84104730 (-)
LOC110530947 LOC106577244 coding upstream 140669 84097627 ~ 84110671 (-)
LOC110531009 NA coding upstream 165733 84122691 ~ 84126832 (-)
LOC110531033 LOC106577242 coding upstream 200571 84157529 ~ 84256949 (-)
G94630 NA non-coding downstream 889 83948902 ~ 83950168 (-)
G94655 NA non-coding downstream 61076 83888097 ~ 83889981 (-)
G94656 LOC106577249 non-coding downstream 65122 83885102 ~ 83885935 (-)
G94374 NA non-coding downstream 153046 83794650 ~ 83798011 (-)
G94693 NA non-coding upstream 1650 83958608 ~ 83958847 (-)
G94702 NA non-coding upstream 11869 83968827 ~ 83969103 (-)
G94707 NA non-coding upstream 18054 83975012 ~ 83975273 (-)
G94708 NA non-coding upstream 19639 83976597 ~ 83976815 (-)
G94613 NA other downstream 148586 83801332 ~ 83802471 (-)
G94201 NA other downstream 465120 83484056 ~ 83485937 (-)
LOC100301648 LOC106577193 other downstream 989735 82949609 ~ 83267163 (-)
LOC110532782 LOC106577197 other downstream 1649210 82291777 ~ 82301867 (-)
G92566 NA other downstream 1789314 82160407 ~ 82161743 (-)
G94821 NA other upstream 246529 84203487 ~ 84204464 (-)
LOC110532813 LOC106613040 other upstream 334802 84291760 ~ 84331700 (-)
G95494 NA other upstream 771906 84728864 ~ 84729423 (-)
G95624 NA other upstream 1022775 84979733 ~ 84980272 (-)

Expression


Co-expression Network