Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110532804 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 83966165 ~ 83967505 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| LOW QUALITY PROTEIN: toll-like receptor 4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110532804 | True | 813 | mRNA | 0.45 | 3 | 83966165 | 83967505 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:ch211-198a12.6 | LOC106577248 | coding | downstream | 9207 | 83951057 ~ 83956958 (-) |
| LOC110530866 | nfu1 | coding | downstream | 124272 | 83814162 ~ 83851846 (-) |
| LOC110530770 | slc25a16 | coding | downstream | 244251 | 83713352 ~ 83721914 (-) |
| LOC110532793 | lox5 | coding | downstream | 264709 | 83676064 ~ 83701456 (-) |
| LOC110530724 | anx11 | coding | downstream | 556865 | 83386983 ~ 83409300 (-) |
| LOC110530927 | LOC106577245 | coding | upstream | 64049 | 84031554 ~ 84104730 (-) |
| LOC110530947 | LOC106577244 | coding | upstream | 130122 | 84097627 ~ 84110671 (-) |
| LOC110531009 | NA | coding | upstream | 155186 | 84122691 ~ 84126832 (-) |
| LOC110531033 | LOC106577242 | coding | upstream | 190024 | 84157529 ~ 84256949 (-) |
| LOC110532813 | LOC106613040 | coding | upstream | 324788 | 84291760 ~ 84331700 (-) |
| G94693 | NA | non-coding | downstream | 7318 | 83958608 ~ 83958847 (-) |
| G94630 | NA | non-coding | downstream | 15997 | 83948902 ~ 83950168 (-) |
| G94655 | NA | non-coding | downstream | 76184 | 83888097 ~ 83889981 (-) |
| G94656 | LOC106577249 | non-coding | downstream | 80230 | 83885102 ~ 83885935 (-) |
| G94702 | NA | non-coding | upstream | 1322 | 83968827 ~ 83969103 (-) |
| G94707 | NA | non-coding | upstream | 7507 | 83975012 ~ 83975273 (-) |
| G94708 | NA | non-coding | upstream | 9092 | 83976597 ~ 83976815 (-) |
| G94759 | NA | non-coding | upstream | 75131 | 84042636 ~ 84043307 (-) |
| G94613 | NA | other | downstream | 163694 | 83801332 ~ 83802471 (-) |
| G94201 | NA | other | downstream | 480228 | 83484056 ~ 83485937 (-) |
| LOC100301648 | LOC106577193 | other | downstream | 1004843 | 82949609 ~ 83267163 (-) |
| LOC110532782 | LOC106577197 | other | downstream | 1664318 | 82291777 ~ 82301867 (-) |
| G92566 | NA | other | downstream | 1804422 | 82160407 ~ 82161743 (-) |
| G94821 | NA | other | upstream | 235982 | 84203487 ~ 84204464 (-) |
| G95494 | NA | other | upstream | 761359 | 84728864 ~ 84729423 (-) |
| G95624 | NA | other | upstream | 1012228 | 84979733 ~ 84980272 (-) |
