LOC110530927 (LOC106577245)


Basic Information

Item Value
gene id LOC110530927
gene name LOC106577245
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84031554 ~ 84104730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614226.2
ATATATAGGACCATGTGTAGATAGTCCAGGAGTTCTGTTGGATAGACAGTCAATTGGCAGcaaccctctcgctctcttttttctctctcgctgtacCTTCTCTCTCTCAAGAGAACGAGCTGGGATATAAAGCTCTCACTGGAAAGTTTCTCTCTGTTTTTTTTAGTGGTTCTGAGCACCTGCCTGTGTCAAAATGAGTGACACTCTGCTGGATGATGGGTCCTTCATGTTCACTTCGGAGTCTGTTGGAGAGGGACATCcagACAAGATATGTGATCAGATCAGTGATGCTGTCCTGGATGCTCACCTGAAGCAGGACCCAAATGCCAAGGTCGCCTGTGAGACGGTTTGTAAGACTGGCATGGTGCTGCTGTGTGGAGAGATCACGTCCCGGGCCAATGTAGACTACCAGAAGGTTGTCAGAGACACCATACAACACATCGGTTATGACAACTCAGACAAAGGTTTTGACTATAAGACGTGTAATGTGTTGGTGGCTCTGGAGCAGCAGAGTCCAGACATCGCTCAGGGTGTCCACATCGACAGGAAAGAGGAAGACATGGGAGCTGGAGACCAGGGTCTGATGTTTGGCTACGCTACTGACGAGACAGAGGAGTGCATGCCTCTCACCATCGTCCTGGCTCACAAACTCAATTCCAAGATGGCCGAACTCAGACGCAACGGAACCATCCCCTGGCTCCGCCCCGACTCTAAAACACAAgtGACAGTACACTATGAGCAGGAGCACGGGGCAGTGATCCCTATAAGGGTCCACACCGTGGTCATCTCTGTTCAACACGATGACTTCATAGGCCTGGAGGAACAGAAGGAGGTGCTCAAGGAGAAGGTGATCAAGGTAGTGGTTCCGGCTAAGTACCTGGATGATAAGACCATCTACCATCTTCAGCCCAGTGGGCGCTTCGTCATCGGAGGACCCCAGGGTGATGCTGGAGTGACGGGTAGGAAGATCATCGTTGATACGTACGGAGGCTGGGGGGCCCATGGTGGGGGAGCTTTCTCTGGTAAAGACTTCTCCAAGGTGGACCGCTCGGCTGCCTATGCTGCCCGCTGGGTGGCCAAGTCCCTGGTCAAGGCCAAACTGTGCAGGAGGGTGCTGGTTCAGgtATCCTACGCTATCGGAGTGGCTCACCCTCTGTCCATCTCCGTGTTCACCTACGGCTCGTCACAAAAGTCAGAGAGAGAGCTGCTGCAGATCGTAAACAAGAACTTTGACCTACGACCTGGTGTCATTGTCCGGGAACTGAACCTGAAGAGGCCAATCTACCAGAAGACAGCGTGCTACGGCCACTTTGGCCGGAGTGAGTTTACCTGGGAAGTCCCCAAGGAGCTCAACTACTAAACATCTCCCCCTGGTGGTCAAGTATATAACAAACTCTTAAACACCCCCGTGGTTAAATATGTAACAAGTATATAACGATCCCTCCCAGAGATAGAAAACAGGCCCCCTCTACGGGCTACAACCACAAATGGTTCTGCTTTTTCATTGGCTAGTGTTGAGGTTAAGGTTTAGGATTAGGGTGAAGGGAGATGTTTTTGGTTAGTGCTAAACAATCATTTATGTGATTGTAGCCCATAGAGGGGTTTGTTTGTTAATGCTTCTTATCTTGAATAAGAGGGATGCAACTTATAGAGGGGAATctttattctccctccctccctctctctctcctccatctctttttCTATCACATCAAACATTTCAGTCAAGAGAGAGGATGAACTCACTGTGATTTTAATCAGACAATCCACACATTTTCATTCAGATAAAAGGTGTCCTTTGTATAGTGTCTCACTTATGTGCCTTAGTATCAAAACAATGACATGTTAGAAGTATTACATGTGCAGAAGTATTTATTCACACTCACTCTGGACAAATAGTGATTCCATTGTCACTTCTGCTATtaaacaaagaaacaaagaaacaaatACAATTAATATATAAAGATaaatattgaatatatatatatatataaagcagagCATTTAGCCTCAAAACTGTGAATTAGTGATGTGTGGTTGGACTCATAACCAGCAGTCGGGTTTAGGGGCATGACATACAGTATTGTGTGGATGAAGTGCGGGTGAGTGGCgggcaggttgaataaagagaaaacagtGCATTAAAATTCATAAATGTATAATTCTTGTGCTATTCATACCTATGGGCTATTTTTATCTGCCGTTAGTGCGTAGCCTGAGCACCTAACTGTAGCGTGCCCAATACATGCAAATTCTCAAATTCTTTTGAGAATTTGGACAGAAAAAGTTTGTCGATCCACTGAGGCAAAAAAAGGACAATGTcggagtttaattcaataagagaaaaacTGAGAAATGGAGTGTTGAAAATAAATAGAAGGTAAGGCCAGGGAAAGATTTGGTAACGTGGTAACAGTGCCAgctatgttatgtgtgatgattgtgagacGCTATACAAATTCGATAGTCACAAGACTCGGACTTCAAAATGCACGTCAAGGGAACTGTTcggttcagatgggttaaatggaaaagTGACCTTACTGTAGGTCTACAACCCTTCACTTAACCTGatataatattaactcctgcaaaATTAAGCATTTGTTGCAGAAACATTATACACCAAATGGACATTTTGACTCGTAACAGAAGTGGGGAAATATTATGAGTGAGACAGAGTGAGAagttagggaccgtctgtaaaggtgGAGGTGCTATCTTTACCAGCCCCATAAAAGCTGatcgtatttcaaccacataaagcATGCATCCAAGCCAAACTGAAATCTTAAAACATGTTGGGTCATTTTAACAGCTGTTAATTTCCTGAAAACCAAtcaaactgattttttttttttgggggggggggggtccctctTTTTTTTGGTATTGCACCGGCCCCTAAACCTATTGTCTGCatgagagaagcagagatgaaaGAGAAAACAAACTTTACTAATGTCAACTGGATTGAAGCATTTATTCTATTGATTTATGCACAGCATGAgggtgttaaattaacacacacCTTATTTGCAATATTCACAGAATGCCTTGCCGTTcgagtgaattgtagagttaccacccatgactattTGTTAGTggcagagacatggttgttgcattcatccaTCATTCATGCTTTCCTGTGACTTTCACCAAGTGTGATTCTAAGCAAATATGTTATTATTGTttcacacaatacaacacatatttCACAAGGCCTGCAACTCACATCACTCTATATTGCTAAATGATGTGTAATTCCGGTTGGATTCCAGACAGATTGGGAATATCCAACATTTGGAATTTGATTCACCCGCAACCTGCATTTATAATGACAGCCGGGTTCGGAAGACTAAAATATCAGACTACCTAAAGCATTTCACAAACCTGTTGTTTTCGACGCATGTGataaaaacaatttgatttgatctaaacTGGAATACCATTACAGTAAAAGGTGCAAGAAGTCCaagtaacagattggattagtttcgaaaaatgtatgttatttatgagtagcataagattaattaatcaatcatCAATTAATAAACATGCAAAAACATACTGAAAAATGTTGACAGCAGATGGGAGTTTTATTCATAACATtggtaatttagctagctaacatacattttgagaaaacaaattatattaactggctagctagcaaCGTTTAGTGATCAATGAGACTGAGAGCTAGCTAACCAGCTGAGCTAGCAAACAATGTAACAAGTATAATTTCGGATTTTAAAAATACTCCCATCAATGGGCTCTGCATTTCAGGAATCACAGTAGCAAATACTCCTGGTGCACTATTCAATGAATTAGCAATTTAAACGTGACTTTTTTGAAGGAAACTCTGTTTGTGCCGTAGCCCTCGCTGTCTTTCATgtggtgcgttcgtaaattcaatcaggagtgccagagtgcgctcagaGTGCCCTCAGggagttcgtaaattcagagcgtttcgctctcgcTGCGTTCATAGCGGACACTGGGGACGAGGGGTAGGGTTGATCGAGTGTTCTGgcctagcttgctagctacttccagccACAAACGAGAGAACaaatcactgaccatttcaaTCGCCCTAGCAGTGCTGGTTAGCctattttcatgttatccagagcattggtgattAACTGCTGCGGGCTACAATTTAATTACGCATTTtatgccgacgtttactgacaccggccacattcaacgggtgttgagcgtctgtaaattcatcagttattctgcgctctggtacactcagacgagagtgctctgaaaccagagtagatagccagaaaTAATGTAAGAACCTTAAACGTTGGAAGTCAGAACCTTAAACGTTGGATGTCAGACTCGACGACAGTTACTCCCATTGGAGCGCTGCGATTGGTTGCCCAACATTTTGGGGCGGGGCTTAGCTGAGGGTTAATTGTGACGCTCGTCCCTACTTTTTAATGCTATTTTATGTTTATTTAGAAAAAATATACATGTAGTGATGTCTTCTGTTTGTATTGTATTGCAATTTGTAATGTTAtatttattacaaaaaaatataaaaaacgatATTATCCCCTCCACTCTGTCCATATCACCTCAAGATGGTGCTATACATCCTGTATTGGTAGTCATCCTTATTAATCAAAGCGGAATATGTATCTGCAGGTTCAAACCACATCCTTCAATCAACCAAATATTAGAAGGGAGATCACCCTCTAACTTGGTTTTCGGATTCAGTTACAACTTATCTTTGCTCTGTATCAAACTGGTTTATATTATATGTAGCTTTGTAAAGATCAAATTCACAAAAGTCTTAATTTTGTAATTATATCATCGATACCGCAGGGCAGTTTTTACaatgcactactactactactacacaacacCAACAACAGGTATGTAGGACGACACAGGTCTCTTATCCCAGGGAGGTCTTGGGCTGTATACGGTACCTCTTACCAGTGTGTTGCAGTTGACCAAATCTAGCAGTAGACATAGCTTTGAATAATGAGGCTTTATAACCACTTATAAGGCATCATAAGGATGCTTAATAACTGTTCATAAGGCCTTATAATGCTTTATGATGTGTCTATGAACCCCTGCTCAGTCCTGTTTGACAATGCTTTTTGTATCTTCATCTGTAGTATAGAGCTACTGTAGAGCTGCTGCTGGGATCTCGCTGTAAACAATATTATCCGCCTTGAATGAATGAACTGTTCTCATCTCTGATGGCTGATAAGGTTTGATGTATTTAGTATTCTGACTTGATTGTGAGTTAATTGTTGTGATTATTTTGCTATAGGCATAAATAGTCTATGAATAAATTGCCAAAGTGCATGCTGCCAACAGTAGGTATATTATTTTGTGGACATCTTAAAAGTTTCTACATTTGTACAATTGTATATGCCTGAGATGGTGCTTTCTGAGGATAATAACATTGAGCTTCCCAAACAAACATGACAGAGGTATTTTATGTTGACAGAATTTCCCTCTTTCATCCATTTTCTCAAACCATTTGAGACATTCACTTGAGTCTTATTTGAAAAGCAGtgataagctctctctctctctctctgtatagagGTATTTTGTATAGACTCTTGTCTGTTTACATTATAAGTCTTACTCTGAGTCGCTTGGcccagtattttttttaaagaccccAATGCAGTCAAAAACTTGATTTCCTAGTGTTTCATATATATAAAAAGTGCTGCATTGGACCGTTAAGGACCTAGTAGGGGAATAGTGTATAAAACAGTCTTCCAAAATATTTCAGAGGGCTGAGTTAGTGAAACCATAAGTAAAGGACTTGAAATACCACAGATGCTTTACCTGCCCATTGTTATAAACCATCCTGAGGGGTTTCATTTTTTATCTACATAAATGCGGGTGTTTCTGCCCTTCACCCTCTGCACCTGAGTCATTGTAGCCTTGAGATGTATTCAGCTGTACTGATCTAGCTATCACCTCTTCCTGTGTCCCAACCTTGTTGTCCTAAGGAAGTTtgcccccccccaaccctctTTACCTAGAAGTTACTGTATGCTTTTCTCCCCCCACCCTCAAACTCACAGTCCTAACAGTTGGCGTAGAATCCTGAAAATGTAAATAATtgttcacaataaaaaatatttaaaaacagaAA
>TU104441
CCCATGActgggtgtcccatagggcaattggcccagcgttgtccaggttagggtttggcctggggtaggccgtcattctaaataagaatttgttcttaactgacttgcctggttaaataaaggtaaaataaaataTCACCTCAAGATGGTGCTATACATCCTGTATTGGTAGTCATCCTTATTAATCAAAGCGGAATATGTATCTGCAGGTTCAAACCACATCCTTCAATCAACCAAATATTAGAAGGGAGATCACCCTCTAACTTGGTTTTCGGATTCAGTTACAACTTATCTTTGCTCTGTATCAAACTGGTTTATATTATATGTAGCTTTGTAAAGATCAAATTCACAAAAGTCTTAATTTTGTAATTATATCATCGATACCGCAGGGCAGTTTTTACaatgcactactactactactacacaacacCAACAACAGGTATGTAGGACGACACAGGTCTCTTATCCCAGGGAGGTCTTGGGCTGTATACGGTACCTCTTACCAGTGTGTTGCAGTTGACCAAATCTAGCAGTAGACATAGCTTTGAATAATGAGGCTTTATAACCACTTATAAGGCATCATAAGGATGCTTAATAACTGTTCATAAGGCCTTATAATGCTTTATGATGTGTCTATGAACCCCTGCTCAGTCCTGTTTGACAATGCTTTTTGTATCTTCATCTGTAGTATAGAGCTACTGTAGAGCTGCTGCTGGGATCTCGCTGTAAACAATATTATCCGCCTTGAATGAATGAACTGTTCTCATCTCTGATGGCTGATAAGGTTTGATGTATTTAGTATTCTGACTTGATTGTGAGTTAATTGTTGTGATTATTTTGCTATAGGCATAAATAGTCTATGAATAAATTGCCAAAGTGCATGCTGCCAACAGTAGGTATATTATTTTGTGGACATCTTAAAAGTTTCTACATTTGTACAATTGTATATGCCTGAGATGGTGCTTTCTGAGGATAATAACATTGAGCTTCCCAAACAAACATGACAGAGGTATTTTATGTTGACAGAATTTCCCTCTTTCATCCATTTTCTCAAACCATTTGAGACATTCACTTGAGTCTTATTTGAAAAGCAGtgataagctctctctctctctctctgtatagagGTATTTTGTATAGACTCTTGTCTGTTTACATTATAAGTCTTACTCTGAGTCGCTTGGcccagtattttttttaaagaccccAATGCAGTCAAAAACTTGATTTCCTAGTGTTTCATATATATAAAAAGTGCTGCATTGGACCGTTAAGGACCTAGTAGGGGAATAGTGTATAAAACAGTCTTCCAAAATATTTCAGAGGGCTGAGTTAGTGAAACCATAAGTAAAGGACTTGAAATACCACAGATGCTTTACCTGCCCATTGTTATAAACCATCCTGAGGGGTTTCATTTTTTATCTACATAAATGCGGGTGTTTCTGCCCTTCACCCTCTGCACCTGAGTCATTGTAGCCTTGAGATGTATTCAGCTGTACTGATCTAGCTATCACCTCTTCCTGTGTCCCAACCTTGTTGTCCTAAGGAAGTTtgcccccccccaaccctctTTACCTAGAAGTTACTGTATGCTTTTCTCCCCCCACCCTCAAACTCACAGTCCTAACAGTTGGCGTAGAATCCTGAAA
>TU104443
CCCATGActgggtgtcccatagggcaattggcccagcgttgtccaggttagggtttggcctggggtaggccgtcattctaaataagaatttgttcttaactgacttgcctggttaaataaaggtaaaataaaataTCACCTCAAGATGGTGCTATACATCCTGTATTGGTAGTCATCCTTATTAATCAAAGCGGAATATGTATCTGCAGGTTCAAACCACATCCTTCAATCAACCAAATATTAGAAGGGAGATCACCCTCTAACTTGGTTTTCGGATTCAGTTACAACTTATCTTTGCTCTGTATCAAACTGGTTTATATTATGTTTCTGCCCTTCACCCTCTGCACCTGAGTCATTGTAGCCTTGAGATGTATTCAGCTGTACTGATCTAGCTATCACCTCTTCCTGTGTCCCAACCTTGTTGTCCTAAGGAAGTTtgcccccccccaaccctctTTACCTAGAAGTTACTGTATGCTTTTCTCCCCCCACCCTCAAACTCACAGTCCTAACAGTTGGCGTAGAATCCTGAAA

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0006556 S-adenosylmethionine biosynthetic process biological_process
GO:0004478 methionine adenosyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614226.2 False 6163 mRNA 0.42 9 84031554 84048130
TU104441 False 1649 lncRNA 0.39 3 84031597 84104730
TU104443 True 534 lncRNA 0.43 4 84031597 84104730

Neighbor

gene id symbol gene type direction distance location
LOC110532804 NA coding downstream 64049 83966165 ~ 83967505 (-)
si:ch211-198a12.6 LOC106577248 coding downstream 74596 83951057 ~ 83956958 (-)
LOC110530866 nfu1 coding downstream 189661 83814162 ~ 83851846 (-)
LOC110530770 slc25a16 coding downstream 309640 83713352 ~ 83721914 (-)
LOC110532793 lox5 coding downstream 330098 83676064 ~ 83701456 (-)
LOC110530947 LOC106577244 coding upstream 49497 84097627 ~ 84110671 (-)
LOC110531009 NA coding upstream 74561 84122691 ~ 84126832 (-)
LOC110531033 LOC106577242 coding upstream 109399 84157529 ~ 84256949 (-)
LOC110532813 LOC106613040 coding upstream 244163 84291760 ~ 84331700 (-)
LOC110522386 LOC106577258 coding upstream 711968 84760098 ~ 84781879 (-)
G94708 NA non-coding downstream 54739 83976597 ~ 83976815 (-)
G94707 NA non-coding downstream 56281 83975012 ~ 83975273 (-)
G94702 NA non-coding downstream 62451 83968827 ~ 83969103 (-)
G94693 NA non-coding downstream 72707 83958608 ~ 83958847 (-)
G94630 NA non-coding downstream 81386 83948902 ~ 83950168 (-)
G94726 NA non-coding upstream 63867 84111997 ~ 84113710 (-)
G94783 NA non-coding upstream 66649 84114779 ~ 84115147 (-)
G94786 NA non-coding upstream 69848 84117978 ~ 84118226 (-)
G94790 NA non-coding upstream 73662 84121792 ~ 84122010 (-)
G94609 NA non-coding upstream 103226 84151356 ~ 84152116 (-)
G94613 NA other downstream 229083 83801332 ~ 83802471 (-)
G94201 NA other downstream 545617 83484056 ~ 83485937 (-)
LOC100301648 LOC106577193 other downstream 1070232 82949609 ~ 83267163 (-)
LOC110532782 LOC106577197 other downstream 1729707 82291777 ~ 82301867 (-)
G92566 NA other downstream 1869811 82160407 ~ 82161743 (-)
G94821 NA other upstream 155357 84203487 ~ 84204464 (-)
G95494 NA other upstream 680734 84728864 ~ 84729423 (-)
G95624 NA other upstream 931603 84979733 ~ 84980272 (-)
LOC118966724 LOC106613591 coding upstream 1057020 85161750 ~ 85171855 (-)

Expression


Co-expression Network