LOC110532822 (LOC106577256)


Basic Information

Item Value
gene id LOC110532822
gene name LOC106577256
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84373236 ~ 84410052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987428.1
CCATGTGAAATACTGGTGTCAAGGATTAGGGTGGGATGTATGTTCGTATGTAGTACGTACTGACCATCCTAAGAGCAGTGGTAAGACCTCAATCTCTGATGACATCAACAAGAGAATCTTCACTGTGACCATGACTGACCTGGCGTCATGGGACTATGGGAATTACAGGTGTGTTGTGGAGATCAATAGAGGAACAGATATCATGATACAATGGTTCTACCTGTCTGTCACTCCAGGTACTCCAGAACTCTATGTGGAACAACAGGAAGTGACTGGAGTAGAAGGAGGGAGTGTCACTGTctgttgttactatagtaactCTGGAGATATGAAGTGGTGCAGGATGGGTGGTGATTGTGTGAGTTGGTATTCTGGGACTTTACATGGAACATCAGTGACATTAACGCGGACTAGTGATGCCAACAACAGAAAAGTCTTAACAGTGACTATGAGTGGACTGAAGATGGAGAACACTGACTGGTATTGGTGTAGAGTTGGAGAAATAGAGATGCCTATTCACATCACTGTCAGTCAACAAACTGCAACACAGAGAACCTCTAAGATGACCTCAACAACCCAAGACCCAACCCCTCAACAACCCTCTGCCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAAGTCAAGGAGCTGAGGGGAACATGGAGGAAGTCCACCAGAGGTCCGTGAAAGTCCTACTCATCTCTCTGGGCatgttggtggtggtgacagctggtATCCTAGTAACATGGAAGATGTGGAGAAGGCATAAGGACAATAAGGCCAAGGACCAGACAACTAACAACTCAGTGGATCCATTTCCTGAAGCTGATGATGATGTCACATACAGCACTGTCATCCCCCAGCACAAGACCCAACTAAAAGGACAGACCAAGTCAGCAGAACCAGATgataatgtggtctacagctcACTAGCTCTACAGGTGACCACACAGcagagggcagcagcacAGCAGTGACTGACAGAGAAGACCTTTGTCTCGTCATTTTACTGGAAGGACAGAACACTCCCTTCTCCTGTGTCACAACATCTGTCTGCCTCCAATATGATTCTGTCATACCTCTTAACCCAACCCAGGTAGATCCCTCTATTCTTTAGTGTAATAAACTACTGAAGACAGTCTGCTGTGTTTGTTTTCATTATCACCACATACACTATCTGTTATATTAGTTATGTTCCATCCACCTTTTCACCTTGTCTCTTGTTGTTTACATGTTCATCTTATTTCTCTCATATATATAGTCAAATGTCCAATGCCAGTAACCAATCAGGAGTGTAAATTTAACGTACAAGCTGTGTAACAAAATAAATATGATGATGAGGCTGAATACAAAATGTACAGTTCCAatcaaaagtattcaccccccttggtatttttcctattttgttgcattacaacctgtaatttaaattgattatTTGGGGATTTAatttaatggacatac
>XM_036987429.1
CCATGTGAAATACTGGTGTCAAGGATTAGGGTGGGATGTATGTTCGTATGTAGTACGTACTGACCATCCTAAGAGCAGTGGTAAGACCTCAATCTCTGATGACATCAACAAGAGAATCTTCACTGTGACCATGACTGACCTGGCGTCATGGGACTATGGGAATTACAGGTGTGTTGTGGAGATCAATAGAGGAACAGATATCATGATACAATGGTTCTACCTGTCTGTCACTCCAGGTACTCCAGAACTCTATGTGGAACAACAGGAAGTGACTGGAGTAGAAGGAGGGAGTGTCACTGTctgttgttactatagtaactCTGGAGATATGAAGTGGTGCAGGATGGGTGGTGATTGTGTGAGTTGGTATTCTGGGACTTTACATGGAACATCAGTGACATTAACGCGGACTAGTGATGCCAACAACAGAAAAGTCTTAACAGTGACTATGAGTGGACTGAAGATGGAGAACACTGACTGGTATTGGTGTAGAGTTGGAGAAATAGAGATGCCTATTCACATCACTGTCAGTCAACAAACTGCAACACAGAGAACCTCTAAGATGACCTCAACAACCCAAGACCCAACCCCTCAACAACCCTCTGCCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAAGTCAAGGAGCTGAGGGGAACATGGAGGAAGTCCACCAGAGGTCCGTGAAAGTCCTACTCATCTCTCTGGGCatgttggtggtggtgacagctggtATCCTAGTAACATGGAAGATGTGGAGAAGGCATAAGGACAATAAGGCCAAGGACCAGACAACTAACAACTCAGTGGATCCATTTCCTGAAGCTGATGATGATGTCACATACAGCACTGTCATCCCCCAGCACAAGACCCAACTAAAAGGACAGACCAAGTCAGCAGAACCAGATgataatgtggtctacagctcACTAGCTCTACAGGTGACCACACAGagggcagcagcacAGCAGTGACTGACAGAGAAGACCTTTGTCTCGTCATTTTACTGGAAGGACAGAACACTCCCTTCTCCTGTGTCACAACATCTGTCTGCCTCCAATATGATTCTGTCATACCTCTTAACCCAACCCAGGTAGATCCCTCTATTCTTTAGTGTAATAAACTACTGAAGACAGTCTGCTGTGTTTGTTTTCATTATCACCACATACACTATCTGTTATATTAGTTATGTTCCATCCACCTTTTCACCTTGTCTCTTGTTGTTTACATGTTCATCTTATTTCTCTCATATATATAGTCAAATGTCCAATGCCAGTAACCAATCAGGAGTGTAAATTTAACGTACAAGCTGTGTAACAAAATAAATATGATGATGAGGCTGAATACAAAATGTACAGTTCCAatcaaaagtattcaccccccttggtatttttcctattttgttgcattacaacctgtaatttaaattgattatTTGGGGATTTAatttaatggacatac
>XM_036987433.1
GTATGTAGTACGTACTGACCATCCTAAGAGCAGTGGTAAGACCTCAATCTCTGATGACATCAACAAGAGAATCTTCACTGTGACCATGACTGACCTGGCGTCATGGGACTATGGGAATTACAGGTACTCCAGAACTCTATGTGGAACAACAGGAAGTGACTGGAGTAGAAGGAGGGAGTGTCACTGTctgttgttactatagtaactCTGGAGATATGAAGTGGTGCAGGATGGGTGGTGATTGTGTGAGTTGGTATTCTGGGACTTTACATGGAACATCAGTGACATTAACGCGGACTAGTGATGCCAACAACAGAAAAGTCTTAACAGTGACTATGAGTGGACTGAAGATGGAGAACACTGACTGGTATTGGTGTAGAGTTGGAGAAATAGAGATGCCTATTCACATCACTGTCAGTCAACAAACTGCAACACAGAGAACCTCTAAGATGACCTCAACAACCCAAGACCCAACCCCTCAACAACCCTCTGCCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAAGTCAAGGAGCTGAGGGGAACATGGAGGAAGTCCACCAGAGGTCCGTGAAAGTCCTACTCATCTCTCTGGGCatgttggtggtggtgacagctggtATCCTAGTAACATGGAAGATGTGGAGAAGGCATAAGGACAATAAGGCCAAGGACCAGACAACTAACAACTCAGTGGATCCATTTCCTGAAGCTGATGATGATGTCACATACAGCACTGTCATCCCCCAGCACAAGACCCAACTAAAAGGACAGACCAAGTCAGCAGAACCAGATgataatgtggtctacagctcACTAGCTCTACAGGTGACCACACAGGTCAGTGTTGGTGTCTCCTCTGTCTGTTGTACCAGATGATGCTGATCTCTCAACAAAGATACAGACAACACCACATTACTATGTGTACTAAACATCACTCTTTAACCACACAAATCTTTCTTAGCCTTTTTAGTTTGCTGCACTTAAACCTGTATCATCACTTTCTGAGAAGCGGACCTTGTCTTTACCATTGTCTGTAAGATTA
>TU104770
GATTGTGTGAGTTGGTATTCTGGGACTTTACATGGAACATCAGTGACATTAACGCGGACTAGTGATGCCAACAACAGAAAAGTCTTAACAGTGACTATGAGTGGACTGAAGATGGAGAACACTGACTGGTATTGGTGTAGAGTTGGAGAAATAGAGATGCCTATTCACATCACTGTCAGTCAACAAACTGCAACACAGAGAACCTCTAAGATGACCTCAACAACCCAAGATCCAACCCCTCAACAACCCTCTGCCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAAGTCAAGGAGCTGAGGGGAACATGGAGGAAGTCCACCAGAGGTTATTATCACTCCTTCAGATGTTTTATCCCACATGTTGTTAGATAATATGAACTCAGAGAAACATTACAATTCCATCATACACTACAACAGTTCATGCTAACCAAACACCCTCCCTAAATGCATATAGAGACCG
>TU104776
ATTAAATGTTAACTCTAATTTCAATGTGTTTTGTGTTGATGTGTCCACAGTGGGGTATGTTTCTGTGCAGACAGGAGGCTCCATCACCTTTCCATGTAGCTATGATCAGTATTACATAAACCACGTGAAGTACTGGTGTAAAGGATTAGTTTGGGAAGTATGTTCTTATGTAGTACGTACTGACCATCCTAAGAGCAGTGGTAAAAACTCAATCTCTGATGACATCAACAAGAGAATCTTCACTGTGACCATGACTAATCTGACGTCATGGGACTATGGGAATTACAGGTGTGTTGTGGAGATCAATAGAGGAACAGATATAATGATACATTGGTTCTACCTATCTGTCACTACAGGTACTCCAGAACTCTATGTGGAACAACAGGAAGTGACTGGAGTAGAAGGAGGGAGTGtcactgtc

Function

NR:

description
polymeric immunoglobulin receptor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987428.1 False 1469 mRNA 0.43 8 84373236 84387056
XM_036987429.1 False 1466 mRNA 0.43 8 84373236 84387056
XM_036987433.1 False 1050 mRNA 0.45 7 84373281 84386504
TU104770 False 467 TUCP 0.43 2 84382757 84410052
TU104776 True 421 lncRNA 0.34 2 84408267 84408984

Neighbor

gene id symbol gene type direction distance location
LOC110531025 NA coding upstream 221109 84133655 ~ 84152127 (+)
LOC110531002 NA coding upstream 261151 84108408 ~ 84112085 (+)
LOC110530965 fam213a coding upstream 275886 84082990 ~ 84097350 (+)
zgc:154058 LOC106577246 coding upstream 342214 83977118 ~ 84031022 (+)
LOC110530893 LOC106577247 coding upstream 421639 83903782 ~ 83951597 (+)
LOC118966004 NA coding downstream 23590 84410646 ~ 84413177 (+)
LOC110531070 LOC106577256 coding downstream 43772 84430828 ~ 84439198 (+)
LOC118936696 LOC106577255 coding downstream 63171 84450227 ~ 84455456 (+)
LOC110531089 LOC106577256 coding downstream 93951 84481007 ~ 84483676 (+)
LOC118966006 NA coding downstream 106925 84493981 ~ 84505098 (+)
G94968 NA non-coding upstream 28007 84344991 ~ 84345229 (+)
G94967 NA non-coding upstream 28580 84344371 ~ 84344656 (+)
G94952 NA non-coding upstream 39183 84333789 ~ 84334053 (+)
G94948 NA non-coding upstream 41163 84331799 ~ 84332073 (+)
G94904 NA non-coding upstream 79663 84291792 ~ 84293573 (+)
LOC110532822 LOC106577256 non-coding downstream 21211 84373236 ~ 84410052 (+)
G95034 LOC106613263 non-coding downstream 52841 84439897 ~ 84492941 (+)
G95042 NA non-coding downstream 69898 84456954 ~ 84489347 (+)
G95058 NA non-coding downstream 120135 84507191 ~ 84560351 (+)
G94463 NA other upstream 325087 84045311 ~ 84048149 (+)
LOC110530763 LOC106577187 other upstream 823646 83511117 ~ 83667671 (+)
LOC110530741 LOC106577189 other upstream 900012 83452248 ~ 83484011 (+)
G93362 NA other upstream 1039660 83333266 ~ 83333576 (+)
G93204 NA other upstream 1283304 83088531 ~ 83089932 (+)
G95702 NA other downstream 753084 85140140 ~ 85141006 (+)
G95821 NA other downstream 847765 85234821 ~ 85235394 (+)
G96133 NA other downstream 1250691 85637747 ~ 85638055 (+)
G96577 NA other downstream 2024151 86411207 ~ 86413212 (+)
LOC118966024 LOC106562881 other downstream 2043146 86420114 ~ 86443279 (+)
G95082 NA non-coding downstream 160007 84568991 ~ 84569225 (+)

Expression


Co-expression Network