LOC118966004


Basic Information

Item Value
gene id LOC118966004
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84410646 ~ 84413177 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053192.1
AGGACAATAAGTCCAAGGACCAGACAACTAACAACTCAGTGGATCCATTTCCTGAAGCTGATGATGATGTCACATACAGCACTGTCATCCCCCAGCACAAGACCCAACTAAAAGGACAGACCAAGTCAGCAGAACCAGATgataatgtggtctacagctcACTAGCTCTACAGGTGACCACACAGcagagggcagcagcacAGCAGTGACTGACAGAGAAGACCTTTGTCTCGTCATTTTACTGGAAGGACAGAAAACTCCCTTCTCCTGTGTCACAACATCTGTCTGCCTCCAATATTCTTCTGTCATACCTCTTAACCCACCCCAGGTAGATCCCTCTATTCTTTAGTGTAATAAACTACTGAAGACAGTCTGCTGTGTTTGTTTTCATTATCACCACATACACTATCTGTTATATTAGTTATGTTCCATCCACCTTTTCACCTTGTCTCTTGTTGTTTACATGTTCATCTTATTTCTCTCATATATATAGTCAAATGTCCAATGCCAGTAACCAATCAGGAGTGTAAATTTAACGTACAAGCTGTGTAACAAAATAAATATGATGATGAGGCTGAATACAAAATGTACAGTTCCAatcaaaagtattcaccccccttggtatttttcctattttgttgcattacaacctgtaatttaaattgattatTTGGGGATTTAatttaatggacatac
>XR_005053191.1
ttgtcgtagttgtgtctagggggacatatgggggagggaatgctgtcacctccaggtaggtgttttctCCACCTGCGTGCTGAGGGCTTCTTGTCTAGTTCTGGCATTTAGATTGCCAAAGACTGGTCCatgtcactgggcctggaaatggttgatctcctCCTCTAGGGTGAGCGAAGTGAGCTGAACATCTGAAGTTCCGGGTCTTTTCCAATGCATGTAGCCATGTGTTTATCTTCTGTGCTGTCCATTTCTCAGAGGCCAAACCCAGAGAGACGCCATGACGTGATGTACAGCACTGTGATGCCTGATCAGTTCAGGACAGAAGAGAAGGTCAACTTATGGCTACAAGCATCTCGGCTCTTAGACAACATAATGACTGTTACTCATAAAACGTCACTGCCTTGGCAAATGTGCATCTGTTTTAGAAAACAATTGTATTTCCACTATCACTTTCTGTCTTGGAACAAGCAATAGGTAAATGTACACTATAACAGTATAACAACACGTTTTTGTTACTTGGGCGTCTCTCTACCAACAGGATCCATTTCCTGAAGCTGATGATGATGTCACATACAGCACTGTCATCCCCCAGCACAAGACCCAACTAAAAGGACAGACCAAGTCAGCAGAACCAGATgataatgtggtctacagctcACTAGCTCTACAGGTGACCACACAGcagagggcagcagcacAGCAGTGACTGACAGAGAAGACCTTTGTCTCGTCATTTTACTGGAAGGACAGAAAACTCCCTTCTCCTGTGTCACAACATCTGTCTGCCTCCAATATTCTTCTGTCATACCTCTTAACCCACCCCAGGTAGATCCCTCTATTCTTTAGTGTAATAAACTACTGAAGACAGTCTGCTGTGTTTGTTTTCATTATCACCACATACACTATCTGTTATATTAGTTATGTTCCATCCACCTTTTCACCTTGTCTCTTGTTGTTTACATGTTCATCTTATTTCTCTCATATATATAGTCAAATGTCCAATGCCAGTAACCAATCAGGAGTGTAAATTTAACGTACAAGCTGTGTAACAAAATAAATATGATGATGAGGCTGAATACAAAATGTACAGTTCCAatcaaaagtattcaccccccttggtatttttcctattttgttgcattacaacctgtaatttaaattgattatTTGGGGATTTAatttaatggacatac

Function

NR:

description
CMRF35-like molecule 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053192.1 False 696 mRNA 0.40 4 84410646 84413177
XR_005053191.1 True 1196 mRNA 0.42 3 84411592 84413177

Neighbor

gene id symbol gene type direction distance location
LOC110532822 LOC106577256 coding upstream 23590 84373236 ~ 84410052 (+)
LOC110531025 NA coding upstream 258519 84133655 ~ 84152127 (+)
LOC110531002 NA coding upstream 298561 84108408 ~ 84112085 (+)
LOC110530965 fam213a coding upstream 313296 84082990 ~ 84097350 (+)
zgc:154058 LOC106577246 coding upstream 379624 83977118 ~ 84031022 (+)
LOC110531070 LOC106577256 coding downstream 17651 84430828 ~ 84439198 (+)
LOC118936696 LOC106577255 coding downstream 37050 84450227 ~ 84455456 (+)
LOC110531089 LOC106577256 coding downstream 67830 84481007 ~ 84483676 (+)
LOC118966006 NA coding downstream 80804 84493981 ~ 84505098 (+)
LOC110532828 LOC106577255 coding downstream 97144 84510321 ~ 84515281 (+)
G94968 NA non-coding upstream 65417 84344991 ~ 84345229 (+)
G94967 NA non-coding upstream 65990 84344371 ~ 84344656 (+)
G94952 NA non-coding upstream 76593 84333789 ~ 84334053 (+)
G94948 NA non-coding upstream 78573 84331799 ~ 84332073 (+)
G95034 LOC106613263 non-coding downstream 26720 84439897 ~ 84492941 (+)
G95042 NA non-coding downstream 43777 84456954 ~ 84489347 (+)
G95058 NA non-coding downstream 94014 84507191 ~ 84560351 (+)
G95082 NA non-coding downstream 155814 84568991 ~ 84569225 (+)
G94463 NA other upstream 362497 84045311 ~ 84048149 (+)
LOC110530763 LOC106577187 other upstream 861056 83511117 ~ 83667671 (+)
LOC110530741 LOC106577189 other upstream 937422 83452248 ~ 83484011 (+)
G93362 NA other upstream 1077070 83333266 ~ 83333576 (+)
G95702 NA other downstream 726963 85140140 ~ 85141006 (+)
G95821 NA other downstream 821644 85234821 ~ 85235394 (+)
G96133 NA other downstream 1224570 85637747 ~ 85638055 (+)
G96577 NA other downstream 1998030 86411207 ~ 86413212 (+)
LOC118966024 LOC106562881 other downstream 2017025 86420114 ~ 86443279 (+)

Expression


Co-expression Network