LOC110531109 (LOC106577259)


Basic Information

Item Value
gene id LOC110531109
gene name LOC106577259
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84524487 ~ 84533498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987474.1
AGCAGTATTACATAAACCACGTGAAATACTGGTGTCAAGGATTAGGTTGGGATGTATGTTCGTATGTAGTACGTACAGACCATCTTAAGAGCAGTGGTAAAAACTCAATCTCTGATGACATCAACAAGAGAATCTTCACTGTGACCATGACTGACCTGACGTCATGGGACTATGGGAATTACAGGTGTGTTGTGGAGATCAATAGAGGACCAGATATCATGATACAATGGTTCTACCTGTCTGTCACTCCAGGTACTCCAGAACTCTATGTGGAACAACAGGAAGTGACTGGAGTAGAAGGAGGGAGTGTCACTGTctgttgttactatagtaactCTGGAGACATGAAGTGGTGCAGGATGGGTGGTGATTGTGTGAGTGGGAATTCTGGGACTTTACATGGAACATCAGTGACATTAAATCAGACTAGTGATGCCAACAACAGAACAGTCTTAACAGTCACTATGAGTGGACTGAAGATGGAGAACACTGACTGGTATTGGTGTAGAGTTGGAGAAATAGAGATGCCTGTTCACATCACTGTCAGTCAACAAACTGCAACACAGAGAACCTCTAAGATGACCTCAACAACCCAAGATCCAACCCCTCAACAACCCTCTGCCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAAGTCAAGGAGCTGAGGGGAACATGGAGGAAGTCCACCAGAGGTCCATAGATGTGAAAGTCCTACTCATCTCTCTGGGCatgttggtggtggtgacagctggtATCCTAGTAACATGGAAGATGTGGAGAAGGCATAAGGACAATAAGGCCAAGGACCAGACAACTAACAACTCAGTGGATCCATTTCCTGAAGCTGATGATGATGTCACATACAGCACTGTCATCCCCCAGCACAAGACCCAACTAAAAGGACAGACCAAGTCAGCAGAACCAGATgataatgtggtctacagctcACTAGCTCTACAGGTGACCACACAGcagagggcagcagcagCACAGTAGTGACTGACTGAGAAGACCTTCCTTTTACTGGAAGGACAGAACACTCCCCTCTCCTGTGTCACAACGTCTATCTGCCTCCAATATTCTTCTGTCATACCTCTTAACCCACCCCAGGAAGACACCTCTATCCTTTAGTGTAATAAACTACTGAAGACAGTCTGCTGTGTTTGTTCTGATTATCATCACATTTCTGTTATTAGTCATGTTCCACCACCTTTCCCCTTGTCTCTTGTTTCTTACATCATGATCTTATTGATCTAGTTTAATGTCCTATGCCTGTAACTAATCATGATCAACGTGTATTAAGATCTTAGTATAGACAGCTATTATGTATAATAACTACTGT
>XM_036987479.1
AGCAGTATTACATAAACCACGTGAAATACTGGTGTCAAGGATTAGGTTGGGATGTATGTTCGTATGTAGTACGTACAGACCATCTTAAGAGCAGTGGTAAAAACTCAATCTCTGATGACATCAACAAGAGAATCTTCACTGTGACCATGACTGACCTGACGTCATGGGACTATGGGAATTACAGGTGTGTTGTGGAGATCAATAGAGGACCAGATATCATGATACAATGGTTCTACCTGTCTGTCACTCCAGGTACTCCAGAACTCTATGTGGAACAACAGGAAGTGACTGGAGTAGAAGGAGGGAGTGTCACTGTctgttgttactatagtaactCTGGAGACATGAAGTGGTGCAGGATGGGTGGTGATTGTGTGAGTGGGAATTCTGGGACTTTACATGGAACATCAGTGACATTAAATCAGACTAGTGATGCCAACAACAGAACAGTCTTAACAGTCACTATGAGTGGACTGAAGATGGAGAACACTGACTGGTATTGGTGTAGAGTTGGAGAAATAGAGATGCCTGTTCACATCACTGTCAGTCAACAAACTGCAACACAGAGAACCTCTAAGATGACCTCAACAACCCAAGATCCAACCCCTCAACAACCCTCTGCCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAAGTCAAGGAGCTGAGGGGAACATGGAGGAAGTCCACCAGAGGTCCATAGATGTGAAAGTCCTACTCATCTCTCTGGGCatgttggtggtggtgacagctggtATCCTAGTAACATGGAAGATGTGGAGAAGGCATAAGGACAATAAGGCCAAGGACCAGACAACTAACAACTCAGTGGATCCATTTCCTGAAGCTGATGATGATGTCACATACAGCACTGTCATCCCCCAGCACAAGACCCAACTAAAAGGACAGACCAAGTCAGCAGAACCAGATgataatgtggtctacagctcACTAGCTCTACAGGTGACCACACAGagggcagcagcagCACAGTAGTGACTGACTGAGAAGACCTTCCTTTTACTGGAAGGACAGAACACTCCCCTCTCCTGTGTCACAACGTCTATCTGCCTCCAATATTCTTCTGTCATACCTCTTAACCCACCCCAGGAAGACACCTCTATCCTTTAGTGTAATAAACTACTGAAGACAGTCTGCTGTGTTTGTTCTGATTATCATCACATTTCTGTTATTAGTCATGTTCCACCACCTTTCCCCTTGTCTCTTGTTTCTTACATCATGATCTTATTGATCTAGTTTAATGTCCTATGCCTGTAACTAATCATGATCAACGTGTATTAAGATCTTAGTATAGACAGCTATTATGTATAATAACTACTGT
>XM_036987484.1
ACGTGAAATACTGGTGTCAAGGATTAGGTTGGGATGTATGTTCGTATGTAGTACGTACAGACCATCTTAAGAGCAGTGGTAAAAACTCAATCTCTGATGACATCAACAAGAGAATCTTCACTGTGACCATGACTGACCTGACGTCATGGGACTATGGGAATTACAGGTACTCCAGAACTCTATGTGGAACAACAGGAAGTGACTGGAGTAGAAGGAGGGAGTGTCACTGTctgttgttactatagtaactCTGGAGACATGAAGTGGTGCAGGATGGGTGGTGATTGTGTGAGTGGGAATTCTGGGACTTTACATGGAACATCAGTGACATTAAATCAGACTAGTGATGCCAACAACAGAACAGTCTTAACAGTCACTATGAGTGGACTGAAGATGGAGAACACTGACTGGTATTGGTGTAGAGTTGGAGAAATAGAGATGCCTGTTCACATCACTGTCAGTCAACAAACTGCAACACAGAGAACCTCTAAGATGACCTCAACAACCCAAGATCCAACCCCTCAACAACCCTCTGCCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAAGTCAAGGAGCTGAGGGGAACATGGAGGAAGTCCACCAGAGGTCCATAGATGTGAAAGTCCTACTCATCTCTCTGGGCatgttggtggtggtgacagctggtATCCTAGTAACATGGAAGATGTGGAGAAGGCATAAGGACAATAAGGCCAAGGACCAGACAACTAACAACTCAGTGGATCCATTTCCTGAAGCTGATGATGATGTCACATACAGCACTGTCATCCCCCAGCACAAGACCCAACTAAAAGGACAGACCAAGTCAGCAGAACCAGATgataatgtggtctacagctcACTAGCTCTACAGGTGACCACACAGcagagggcagcagcagCACAGTAGTGACTGACTGAGAAGACCTTCCTTTTACTGGAAGGACAGAACACTCCCCTCTCCTGTGTCACAACGTCTATCTGCCTCCAATATTCTTCTGTCATACCTCTTAACCCACCCCAGGAAGACACCTCTATCCTTTAGTGTAATAAACTACTGAAGACAGTCTGCTGTGTTTGTTCTGATTATCATCACATTTCTGTTATTAGTCATGTTCCACCACCTTTCCCCTTGTCTCTTGTTTCTTACATCATGATCTTATTGATCTAGTTTAATGTCCTATGCCTGTAACTAATCATGATCAACGTGTATTAAGATCTTAGTATAGACAGCTATTATGTATAATAACTACTGT

Function

NR:

description
polymeric immunoglobulin receptor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987474.1 False 1350 mRNA 0.44 8 84524487 84533498
XM_036987479.1 False 1347 mRNA 0.44 8 84524487 84533498
XM_036987484.1 True 1264 mRNA 0.44 8 84524505 84533498

Neighbor

gene id symbol gene type direction distance location
LOC110532828 LOC106577255 coding upstream 9206 84510321 ~ 84515281 (+)
LOC118966006 NA coding upstream 29262 84493981 ~ 84505098 (+)
LOC110531089 LOC106577256 coding upstream 40811 84481007 ~ 84483676 (+)
LOC118936696 LOC106577255 coding upstream 69031 84450227 ~ 84455456 (+)
LOC110531070 LOC106577256 coding upstream 85289 84430828 ~ 84439198 (+)
LOC110531148 LOC106577240 coding downstream 16444 84549942 ~ 84559584 (+)
LOC110531152 LOC106577239 coding downstream 38365 84571863 ~ 84582823 (+)
LOC118966011 NA coding downstream 49460 84582958 ~ 84585890 (+)
LOC110531174 LOC106577237 coding downstream 80473 84613971 ~ 84650807 (+)
LOC110532845 LOC106577236 coding downstream 127529 84661027 ~ 84705974 (+)
G95034 LOC106613263 non-coding upstream 31546 84439897 ~ 84492941 (+)
G95042 NA non-coding upstream 35140 84456954 ~ 84489347 (+)
LOC110532822 LOC106577256 non-coding upstream 115503 84373236 ~ 84410052 (+)
G94968 NA non-coding upstream 179258 84344991 ~ 84345229 (+)
G95082 NA non-coding downstream 35493 84568991 ~ 84569225 (+)
G95121 NA non-coding downstream 113832 84647330 ~ 84647708 (+)
G95364 NA non-coding downstream 204243 84737741 ~ 84738014 (+)
G94463 NA other upstream 476338 84045311 ~ 84048149 (+)
LOC110530763 LOC106577187 other upstream 974897 83511117 ~ 83667671 (+)
LOC110530741 LOC106577189 other upstream 1051263 83452248 ~ 83484011 (+)
G93362 NA other upstream 1190911 83333266 ~ 83333576 (+)
G95702 NA other downstream 606642 85140140 ~ 85141006 (+)
G95821 NA other downstream 701323 85234821 ~ 85235394 (+)
G96133 NA other downstream 1104249 85637747 ~ 85638055 (+)
G96577 NA other downstream 1877709 86411207 ~ 86413212 (+)
LOC118966024 LOC106562881 other downstream 1896704 86420114 ~ 86443279 (+)

Expression


Co-expression Network