LOC110531148 (LOC106577240)


Basic Information

Item Value
gene id LOC110531148
gene name LOC106577240
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84549942 ~ 84559584 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987493.1
TGGTCCTTGATACACATTTGTGCTCAGGTACCATTTAATATTACATGCAGACTGAAACCCTCACATGGCTAaccatctctccttccccctcctcctctttatcttCTTCCACAGAGTCTCAGCAGCGAGGCATGTGTCTGTGCAGTCAGGAGGCTCCATCACCATCCCATGTAGCTATGATCAGTATTACATACACCACGTGAAGTACTGGTGTAAAGGGTATGGTTGGACTCATTGCTTCTCTGTAGTACGCACTGACCATCCTAAGAGCACTGATAGGGCGTCAatctctgatgacatcacccagaAAGTCTTCACTGTGATCATGACTGATCTGGAGCCAGACGACTCTAATATTTACAGGTGTGTTGTGGAGATCAATGGAGGAACAGATAGCATGATACAACTGCTCTACCTGTCTGTCACTCCAGCAACCCAAGATCCAACCCCTCAACAACCCTCTGCCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAAGTCAAGGAGCTGAGGGGAACATGGAGGAAGTCCACCAGAGGTCCGTGAAAGTCCTACTCATCTCTCTGGGCatgttggtggtggtgacagctggtATCCTAGTAACATGGAAGATGTGGAGAAGGCACAAGGACAATAAGGCCAAGGACCAGACAACTAACAACTCAGTGtCTGCTGACCCTGAGCAGGACATTACATACAGCACAGTGACCCACACCAGAGAAACAGCACCGCAGGATCCATTTCCTGAAGCTGATGATGATGTCACATACAGCACTGTCATCCTCCAGCACAAGACCCAACTAAAAGGACAGACCAAGTCAGCAGAACCAGATgataatgtggtctacagctcACTAGCTCTACAGGTGACCACACAGcagagggcagcagcagCACAATAGTGACTGACAAAGAAGACCTTCCTTTTACTGGAAGGACAGAACACTCCCCTCTCCTGTGTCACAACATCTATCTGCCTCCAATATGATTCTGTCATACCTCTTAACCCACCCCAGGAATACACCTCTATCCTTTAGTGTAATAAACTACTGAAGGCAGTCTGCTGTGTTTGTTCTGATTATCATCACATTTCTGTTATTAGTCATGTTCCACCACCTTTCCCCTTGTCTCTTATTTCTTACATCATGATCTCATTGATCTAGTTTAATGTCCTATGCCTGTAACTAATCATGATCAAACGTGTATTAAGATCATAGTATAGACAGCTACTATGTATAATAACTACTGTACTTCAATAATAAAATGTACTATATATATTAAACAATggaaatttatttttttaaatgcaattGTTACATCTATTTATGGCAACTATTTATAGGA
>XM_036987499.1
TGGTCCTTGATACACATTTGTGCTCAGGTACCATTTAATATTACATGCAGACTGAAACCCTCACATGGCTAaccatctctccttccccctcctcctctttatcttCTTCCACAGAGTCTCAGCAGCGAGGCATGTGTCTGTGCAGTCAGGAGGCTCCATCACCATCCCATGTAGCTATGATCAGTATTACATACACCACGTGAAGTACTGGTGTAAAGGGTATGGTTGGACTCATTGCTTCTCTGTAGTACGCACTGACCATCCTAAGAGCACTGATAGGGCGTCAatctctgatgacatcacccagaAAGTCTTCACTGTGATCATGACTGATCTGGAGCCAGACGACTCTAATATTTACAGGTGTGTTGTGGAGATCAATGGAGGAACAGATAGCATGATACAACTGCTCTACCTGTCTGTCACTCCAGCAACCCAAGATCCAACCCCTCAACAACCCTCTGCCTCTCCAACTGCTGAGCCTGTTCAGACTGACAACACAAGTCAAGGAGCTGAGGGGAACATGGAGGAAGTCCACCAGAGGTCCGTGAAAGTCCTACTCATCTCTCTGGGCatgttggtggtggtgacagctggtATCCTAGTAACATGGAAGATGTGGAGAAGGCACAAGGACAATAAGGCCAAGGACCAGACAACTAACAACTCAGTGtCTGCTGACCCTGAGCAGGACATTACATACAGCACAGTGACCCACACCAGAGAAACAGCACCGCAGGATCCATTTCCTGAAGCTGATGATGATGTCACATACAGCACTGTCATCCTCCAGCACAAGACCCAACTAAAAGGACAGACCAAGTCAGCAGAACCAGATgataatgtggtctacagctcACTAGCTCTACAGGTGACCACACAGagggcagcagcagCACAATAGTGACTGACAAAGAAGACCTTCCTTTTACTGGAAGGACAGAACACTCCCCTCTCCTGTGTCACAACATCTATCTGCCTCCAATATGATTCTGTCATACCTCTTAACCCACCCCAGGAATACACCTCTATCCTTTAGTGTAATAAACTACTGAAGGCAGTCTGCTGTGTTTGTTCTGATTATCATCACATTTCTGTTATTAGTCATGTTCCACCACCTTTCCCCTTGTCTCTTATTTCTTACATCATGATCTCATTGATCTAGTTTAATGTCCTATGCCTGTAACTAATCATGATCAAACGTGTATTAAGATCATAGTATAGACAGCTACTATGTATAATAACTACTGTACTTCAATAATAAAATGTACTATATATATTAAACAATggaaatttatttttttaaatgcaattGTTACATCTATTTATGGCAACTATTTATAGGA

Function

NR:

description
CMRF35-like molecule 5 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987493.1 False 1349 mRNA 0.44 9 84549942 84559584
XM_036987499.1 True 1346 mRNA 0.44 9 84549942 84559584

Neighbor

gene id symbol gene type direction distance location
LOC110531109 LOC106577259 coding upstream 16444 84524487 ~ 84533498 (+)
LOC110532828 LOC106577255 coding upstream 34661 84510321 ~ 84515281 (+)
LOC118966006 NA coding upstream 54717 84493981 ~ 84505098 (+)
LOC110531089 LOC106577256 coding upstream 66266 84481007 ~ 84483676 (+)
LOC118936696 LOC106577255 coding upstream 94486 84450227 ~ 84455456 (+)
LOC110531152 LOC106577239 coding downstream 12279 84571863 ~ 84582823 (+)
LOC118966011 NA coding downstream 23374 84582958 ~ 84585890 (+)
LOC110531174 LOC106577237 coding downstream 54387 84613971 ~ 84650807 (+)
LOC110532845 LOC106577236 coding downstream 101443 84661027 ~ 84705974 (+)
LOC110531225 LOC106577235 coding downstream 300353 84859937 ~ 84891485 (+)
G95034 LOC106613263 non-coding upstream 57001 84439897 ~ 84492941 (+)
G95042 NA non-coding upstream 60595 84456954 ~ 84489347 (+)
LOC110532822 LOC106577256 non-coding upstream 140958 84373236 ~ 84410052 (+)
G94968 NA non-coding upstream 204713 84344991 ~ 84345229 (+)
G95082 NA non-coding downstream 9407 84568991 ~ 84569225 (+)
G95121 NA non-coding downstream 87746 84647330 ~ 84647708 (+)
G95364 NA non-coding downstream 178157 84737741 ~ 84738014 (+)
G94463 NA other upstream 501793 84045311 ~ 84048149 (+)
LOC110530763 LOC106577187 other upstream 1000352 83511117 ~ 83667671 (+)
LOC110530741 LOC106577189 other upstream 1076718 83452248 ~ 83484011 (+)
G93362 NA other upstream 1216366 83333266 ~ 83333576 (+)
G95702 NA other downstream 580556 85140140 ~ 85141006 (+)
G95821 NA other downstream 675237 85234821 ~ 85235394 (+)
G96133 NA other downstream 1078163 85637747 ~ 85638055 (+)
G96577 NA other downstream 1851623 86411207 ~ 86413212 (+)
LOC118966024 LOC106562881 other downstream 1870618 86420114 ~ 86443279 (+)

Expression


Co-expression Network