LOC118966011


Basic Information

Item Value
gene id LOC118966011
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84582958 ~ 84585890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987516.1
TGAGAGGAAAGGTGTAGTGTGGCCATTCGGTCAGTATAGTCCCTATAATCCCaagcctgtattcataaagcatcttaAAATGCTGATCTACGATCATTTTAGATCATGATGAATCAGATTAcctggacaggggggacctgatcctagatcagctttTATTTACATTTAAGTCAAGCTAGCTAGATGTGACACTCCTACTCTAGGACTCTTTATGGATATGGACCCAGAGCTTTACTTCACTCTAAGTCCTGTCATTGCACTTCATGTACTTGAATGTAGGAGCACAGTAGTCTATTTACTTGAAAGATGGAGCACATTGAGAAATACAAGGCCCTGCTTCAGTATATTACTGACACAGCAGGGGTCATGAACTGCCCGGCCACAGATCTTGGCAATAATCCTCAATTGGATGGACGAGTGACCATATCCTCAATTAATCCCCAACAATAATGGAACTGCTCATAAAAGTATTATGTCTTAACATgcgtgcacaaacacacatatgaaAAGAAGTGATACAAAAAAATAACATGTCATATAGATGATCATAACTAGTAATTGAGaagtttgcacatttattgaattTATAGATTTTGAAGAAGTGCTGTATATCATGATCAAGGGAACAGATTTGTCTGGGAAATTAACATGTATGGAATTATAGGCCGTAACAGACCAGGCCTTAACAGACCAGGCCTTAACAGACCAGGCCTTAACAGACCAGTTATAGGCCTTAACAGACCAGGCCTTAACAGACCAGTTATAGGCCTTAACAGACCAGTTATAGGCCTTAACAGACCAGTTATCGGCCTTAACAGACCAGACCTTAACAGACCAGACCTTAACAGACCAGACCTTAACAGACCAGTTATAGGCCTCAGCAGACCAGAAATAGGCCTTAACAGACCAGTTATAGGCCTTAACAGACCAGTTATCGGTCTTAACAGACCAGGCCTTAACAGACCAGTTATAGGCCTTAACAGACCAGTTATAGGCCTTAACAGACCAGTTATAGGCCTTAACAGACCAGTTATCGGCCTTAACAGACCAGACCTTAACAGACCAGACCTTAACAGACCAGTTATCGGCCTTAACAGACCAGACCTTAACAGACCAGACCTTAACAGACCAGTTATAGGCCTTAGCAGACCAGGCCTTAACAGAACAGTTATAGGCCTTAACAGACCAGTTATCGGCCTTAACAGACCAGGCCTTAACAGACCAGTTATAGGCCTTTGGAGACCAGGCCTTAACAGAACAGTTATAGGCCTTAACAGACCAGGCCTTAACAGACCAGTTATAGGCCTCAGCAGACCAGAAATAGGCCTTAACAGACCAGTTATAGGCCTTAGCAGACCAGGCCTTAACAGACCAGTTATAGGCCTTAACAGACCAGGCCTTAACAGACCAGGACTTAAAAACCCAGGCCTTAACAGACCAGTTATAGGCCTCAGCAGACCAGGCCTTAACAGACCAGGCCTTAACAGACCAGTTATAGGCATTAGCAGACCAGGTCTTAACAGACCAGTTATAGGCCTTAACAGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACTTGTTATAGGCCTCAGCAGACTAGTTATAGGCCTCAGCAGACTAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACTAGTTATAGGCCTCAGCAGACCAGTTATAGAACTTAGCAGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACTAGTTATAGGCCTCAGCAGACCAGTTATAGAACTTAGCAGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCTGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACTAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACTAGTTATAGGCCTCAGCAGACCAGTTATAGAACTTAGCATACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCCGTTATAGAACTTAGCAGACCAGTTATAGGCCTCAGCAGACTAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCCGTTATAGAACTTAGCAGACCAGAGGCAGTCGTTCCAGAAAGCTGTGTATTGTCGAGTTATCTGCTAGAATACTTATTCCCAGTCTTACTTAAGCCTTAACCTATTCATCTGATCTTGCAGTAGTTAACATGTAATAAGCCATTTGTAATGTGTTATTAACCCTTTATCAACATGTATGAAACATTTATTAGCTCTGGGACTGTGCAAGAAAAAGAGAAACACAAAAAAAGTGTCATAGAAACACATAGTTTGGTCAGTCTGTTCAGTCTGTTCAGTCCGTTCAGTCCATTCAGTCCATTCAGTCTGTTCAGTCCGTTCAGTCCGTTCAGTCCGTTCAGTCTGTTCAGTCTGTTCAGTCTGTTCAGTCTGTTCAGTCCGTTCAGTCTGTTCAGTCTGTTCAGTCCATTCAGTCTGTTCAGTCCGTTCAGTCTGTTCAGTCCGTTCAGTCTGTTCAGTCCGTTCAGTCTGTTTAAATGTAGATTTTGCTATCTTGAAGCTGCTGCTATGTCAATAAAAATCTATATTCCTAA
>TU104885
GTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCCGTTATAGAACTTAGCAGACCAGAGGCAGTCGTTCCAGAAAGCTGTGTATTGTCGAGTTATCTGCTAGAATACTTATTCCCAGTCTTACTTAAGCCTTAACCTATTCATCTGATCTTGCAGTAGTTAACATGTAATAAGCCATTTGTAATGTGTTATTAACCCTTTATCAACATGTATGAAACATTTATTAGCTCTGGGACTGTGCAAGAAAAAGAGAAACACAAAAAAAGTGTCATAGAAACACATAGTTTGGTCAGTCTGTTCAGTCTGTTCAGTCCGTTCAGTCTGTTCAGTCCATTCAGTCTGTTCAGTCCGTTCAGTCTGTTCAGTCCGTTCAGTCTGTTCAGTCCGTTCAGTCTGTTTAAATGTAGATTTTGCTATCTTGAAGCTGCTGCTATGTCAATAAAAATCTAT
>TU104886
GTTATAGGCCTCAGCAGACCAGTTATAGGCCTCAGCAGACCCGTTATAGAACTTAGCAGACCAGAGGCAGTCGTTCCAGAAAGCTGTGTATTGTCGAGTTATCTGCTAGAATACTTATTCCCAGTCTTACTTAAGCCTTAACCTATTCATCTGATCTTGCAGTAGTTAACATGTAATAAGCCATTTGTAATGTGTTATTAACCCTTTATCAACATGTATGAAACATTTATTAGCTCTGGGACTGTGCAAGAAAAAGAGAAACACAAAAAAAGTGTCATAGAAACACATAGTTTGGTCAGTCTGTTCAGTCTGTTCAGTCCGTTCAGTCTGTTCAGTCCGTTCAGTCTGTTCAGTCTGTTCAGTCCATTCAGTCTGTTCAGTCCGTTCAGTCTGTTCAGTCCGTTCAGTCTGTTCAGTCCGTTCAGTCTGTTTAAATGTAGATTTTGCTATCTTGAAGCTGCTGCTATGTCAATAAAAATCTAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC106577254

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987516.1 False 2834 mRNA 0.44 2 84582958 84585890
TU104885 False 456 lncRNA 0.36 2 84585319 84585882
TU104886 True 483 lncRNA 0.40 2 84585319 84585882

Neighbor

gene id symbol gene type direction distance location
LOC110531152 LOC106577239 coding upstream 135 84571863 ~ 84582823 (+)
LOC110531148 LOC106577240 coding upstream 23374 84549942 ~ 84559584 (+)
LOC110531109 LOC106577259 coding upstream 49460 84524487 ~ 84533498 (+)
LOC110532828 LOC106577255 coding upstream 67677 84510321 ~ 84515281 (+)
LOC118966006 NA coding upstream 87733 84493981 ~ 84505098 (+)
LOC110531174 LOC106577237 coding downstream 28081 84613971 ~ 84650807 (+)
LOC110532845 LOC106577236 coding downstream 75137 84661027 ~ 84705974 (+)
LOC110531225 LOC106577235 coding downstream 274047 84859937 ~ 84891485 (+)
LOC118966016 NA coding downstream 307388 84893278 ~ 84896681 (+)
LOC110531368 slc35f3 coding downstream 427012 85012902 ~ 85159914 (+)
G95082 NA non-coding upstream 13733 84568991 ~ 84569225 (+)
G95058 NA non-coding upstream 22607 84507191 ~ 84560351 (+)
G95034 LOC106613263 non-coding upstream 90017 84439897 ~ 84492941 (+)
G95121 NA non-coding downstream 61440 84647330 ~ 84647708 (+)
G95364 NA non-coding downstream 151851 84737741 ~ 84738014 (+)
G95383 NA non-coding downstream 197471 84783361 ~ 84783580 (+)
G95397 NA non-coding downstream 232879 84818769 ~ 84818980 (+)
G95398 NA non-coding downstream 233444 84819334 ~ 84819592 (+)
LOC110532822 LOC106577256 other upstream 172906 84373236 ~ 84410052 (+)
G94463 NA other upstream 534809 84045311 ~ 84048149 (+)
LOC110530763 LOC106577187 other upstream 1033368 83511117 ~ 83667671 (+)
LOC110530741 LOC106577189 other upstream 1109734 83452248 ~ 83484011 (+)
G93362 NA other upstream 1249382 83333266 ~ 83333576 (+)
G95702 NA other downstream 554250 85140140 ~ 85141006 (+)
G95821 NA other downstream 648931 85234821 ~ 85235394 (+)
G96133 NA other downstream 1051857 85637747 ~ 85638055 (+)
G96577 NA other downstream 1825317 86411207 ~ 86413212 (+)
LOC118966024 LOC106562881 other downstream 1844312 86420114 ~ 86443279 (+)

Expression


Co-expression Network