LOC110532845 (LOC106577236)


Basic Information

Item Value
gene id LOC110532845
gene name LOC106577236
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84661027 ~ 84705974 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987532.1
gaagaaagagaaagattGACCAGAGACCTCATCTAGCAGGCACACTTCCTtactcagtcactctctcctctcccggtcTGGGACGTGTAGGACAGCTGTGTCTGTAGCTTTCTATCAGGTGAGTCCATCCTCCTTACTCagtcgctctctcctctcccggtcTGGGACGTGTAGGACAGCTGTGTCTGTAGCTTTCTATCAGGTGAGTCCATCCTCCTTACTCagtcgctctctcctctcccggtcTGGGACGTGTAGGACAGCTGTGTCTGTAGCTTTCTATCAGGTGAGTCCATCCTCCTTACTCagtcgctctctcctctcccggtcTGGGACGTGTAGGACAGCTGTGTCTGTAGCTTTCTATCAGGTGAGTCCATCCTCCTtactcagtcactctctcctctcccggtcTGGGACGTGTAGGACAGCTGTGTCTGTAGCTTTCTATCAGGTGAGTCCATCCTCCTtactcagtcactctctcctctcccggtcTGGGACGTGTAGGACAGCTGTGTCTGTAGCTTTCTATCAGGTGAGTCCATCCTCCTtactcagtcactctctcctttCCCGGTCTGGGACGTGTAGGACAGCTGTGTCTGTAGCTTTCTATCAGGTGAGTCCATCCTCCTtactcagtcactctctcctctcccggtcTGGGACGTGTAGGACAGCTGTGTCTGTAGCTTTCTATCAGGTGAGTCCATCCTCCTTACTCagtcgctctctcctctcccggtcTGGGACGTGTAGGACAGCTGTGTCTGTAGCTTTCTATCAGGTGAGTCCATCCTCCTtactcagtcactctctcctctcccggtcTGGGACGTGTAGGACAGCTGTGTCTGTAGCTTTCTATCAGACATGATGCATCGCATCTTCCTCATCTGCTTGAgttctctgctcctcctcctcttcctctcctcctccgcgCTTTCGGAACCCCGCCGATGGTCGTCATCCTCACCAAGCAGCAGGACCGCGCGCGCTCCGGTTTCCAAGGTGCGCCTGGCGGGAAACTTCGCCCGGGGACTGAACGAGGGTCGCGTGGAAGTGCTTCACAACAGCACGTGGGGGACGGTGTGTGATGACGAAGTGGATATCAAACTAGCCAAAGTCGTCTGCCGCGAGCTGGGCTTTCAGACCGGCATCACGTGGGCGCACAGTGCCAAATATGGAGAGGGTGATGGTCCTATCTGGATGGACAACGTGCGTTGTGACGGCACAGAGAAGACTGTGAAAGACTGTAAACATAACGGCTGGGGTGTCAATGATTGCAAGCACTCTGAGGACCTTGGCGTGGTCTGCAGTCCGGAGCGACGACTGGACCAGGTCACGGGGTCACGTATTGGTCAGTCAGTGGCCCTGCGTCCGGATGTCAGCGTCTCGCCCCAGTGGCAAAGCATCCTGGCCAGCCGCAGTAACCCCCGACAGGCCCATCATGGGAACGGACACCCTCcagagaggcccagccagagacaGCACCACTACAACCCGTATTCCAGCAAGGTGCGTATCCAGGAGGTGCGTCTGCGGCCCATCCTGATGCACACTAAGAAGCGGGCCCTGATCACTGAGGGCGTGGTGGAAGTGAAGCATGCTGGGAGATGGAGGCAGGTGTGTGACCTGGGCTGGAACCTCAACAGCAGCAGAGTGGTGTGTGGAATGCTGGGGTTCCCTGAGGCAGAACTACACAACGAAAGAACATACAAGAAAATCTGGGACGCCAAGCTTGCTGATCCATCCACAAAGCTGAGCCTCATGGCTAGTAAGAAAAGTTACTGGGTAGAGAAGGTTCACTGCCTGGGGTCAGAGACCAGCCTATCAGAGTGTCACACTAAGCTGTCCATCCCACTTAGCCCCTCCCCCTGTAAGAGTGGGAGACACGCTGTGGCGAGGTGTGTACTGGGACCACAGTTTGCGCTCATGTCATCTGGAAGACCCCAAGCACCGCACCCAATTGTACCGGTGCGTCTGAAGGCTGGCCCCAGGCTGGGCGAGGGCCGTGTGGAGGTGTTGAAGGAGGGGAAGTGGGGTACCATCGTAGACCACCTGTGGGACCTCAACTCAGCCAGCGTGGTGTGCAGGGAGCTGGGCTTCGGAACTGCCAAGGAGGCCCTCACTGGAGCTCACATGGGACAAGgtactgGTCCTATCCATATTAACAGTGTCCAGTGTTTGGGGACAGAGAAGTCTATCCTTGAATGTAACTTCCAGGATGCCCCTCTATGGACGTTCAAACACACCCAGGACGCCTCAGTACGCTGCAACGTCCCCAAGCTTGGCCTGGACAGCATGGTGCGGTTGGCGGGAGGCAGGGAGCCAGGTGAGGGCCGTGTGGAGGTACTGATGGATGTAGGGGGTCGTAAGAGATGGGGGTCAGTCTGCAGTGAGAACTGGGGGATCAACGAAGCCATGGTGGTCTGTCGACAGCTGGGTCTGGGGTTCGCATCCCGAGCACACCAGgagacATGGTATTGGGCTGGGGATCCTAACGCAGCAGAGTTGGTGTTGAGTGGAACCCACTGTGTCGGAAATGAGCTGTCAATCCAACAGTGTCGCCGTAACAACCACATCCACTGTCCCCGGGGTGGCGGGACTAAGGCTGCAGGGGTCACCTGTTCAGAGACTGCCCCTGACCTGGTACTAGATGCCCAACTGGTTCAGGAGACAGCCTACCTGGAGGACCGACCCCTACACCTGCTGACCTGTGCCAACGAGGAGAACTGTCTGTCGTCTTCCGCTGCCAGAATGAACTGGCCCTATGGACACCGCCGCCTGCTACGATTCTCCTCCAGGATCATGAACATGGGACGGGCCGACTTCAGACCTAGGGCTACTAGGGAGTCTTGGACCTGGCATGCGTGTCACAGGCACTACCACAGCATTGAGGTGTTCACCCACTATGACCTGCTGACTCTGAATGGGACCAGGATAGCAGAGGGACACAAGGCCagcttctgtctggaggatacaTACTGCCCTGAAGGTCTGCATAAGCGTTTCTCCTGCTACAACATGGGCGACCAGGGCATCTCAGTGGGCTGCTGGGATACGTACCGCCACGACATCGACTGTCAGTGGATCGACATCACCGATGTCAAGCCTGGAGACTACATAttccagGTGGAAGTCAACCCCTCGTTAGACATGGCTGAGTCAGACTTCCAGAACAACGTGATGAGATGTCGATGCAAATACGACGGACACAGAGCGTACATGTATGGATGTCACGCAGGTGATGCGTACAGTGCAGAGATTGAGGACCTGTTTGATCACCAAAGGCAGATCTCCAATAACTTTGTCTAGGCCCATCCAGGGCCCAGCGTTGGCCCAGGCTGGTGCCCAGCAAAGAGGGCTCAGAGCTGGGGCCAAAACTGCTCAGGGTGccctggggtctggaggtctggtgGGTCGTGGGATCCTGCCCCACAACACTAGGGGACTCACAAAATGGCACCTGTCCACTGCCCTTACCTGCTGTGGACTACACTACCCAGAATAAACCACAACTAGGAGACCATCACCCTGACTATAGCTTTCGACCCCAACAGCCAATAGAAACTGAGAGCAGGACAGATGTCACCAGGGAAACCAAATGATTTCAGTTAACAATGGAGGGTTACAATGATATGGATTCAATCAACGTTTAGGTATTTTGTTAGTTTATGAATGTGGACTACTAGTAACTTAGCTACTCAAAATgtatattaattaattaattttaatTCAAGTTGAAATTATAATTGTACATCTAACATACCAACCTGATCAAAGAGCATGTCGTATGATTATGTATGTAAATCCCTGATACTCCtttcagtatgatatgttacatttcgtatggtatgtatcaATTTgaggatgtccatcacccatttcatataCTTTGTTCAtattatatgttatgaattttcTAAATTCAAAACAGGTTACGAATTTACAAAACACATGATATTTAATGAATTCTAGTAAAgtggctagctggctaatgttagctagctggctaatgttagctagctggctaatgttagctagctggctaacgttagctagctggctaacgttagctagctggctaacgttagctagctggctaat

Function

NR:

description
PREDICTED: lysyl oxidase homolog 4-like

GO: NA

KEGG:

id description
K00280 LOXL2_3_4; lysyl oxidase-like protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987532.1 True 4113 mRNA 0.53 15 84661027 84705974

Neighbor

gene id symbol gene type direction distance location
LOC110531174 LOC106577237 coding upstream 10220 84613971 ~ 84650807 (+)
LOC118966011 NA coding upstream 75137 84582958 ~ 84585890 (+)
LOC110531152 LOC106577239 coding upstream 78204 84571863 ~ 84582823 (+)
LOC110531148 LOC106577240 coding upstream 101443 84549942 ~ 84559584 (+)
LOC110531109 LOC106577259 coding upstream 127529 84524487 ~ 84533498 (+)
LOC110531225 LOC106577235 coding downstream 153963 84859937 ~ 84891485 (+)
LOC118966016 NA coding downstream 187304 84893278 ~ 84896681 (+)
LOC110531368 slc35f3 coding downstream 306928 85012902 ~ 85159914 (+)
LOC110511715 LOC106613617 coding downstream 471680 85177654 ~ 85181148 (+)
LOC110513561 LOC106560234 coding downstream 598300 85304274 ~ 85351424 (+)
G95121 NA non-coding upstream 13319 84647330 ~ 84647708 (+)
G95082 NA non-coding upstream 91802 84568991 ~ 84569225 (+)
G95058 NA non-coding upstream 100676 84507191 ~ 84560351 (+)
G95364 NA non-coding downstream 31767 84737741 ~ 84738014 (+)
G95383 NA non-coding downstream 77387 84783361 ~ 84783580 (+)
G95397 NA non-coding downstream 112795 84818769 ~ 84818980 (+)
G95398 NA non-coding downstream 113360 84819334 ~ 84819592 (+)
G95403 NA non-coding downstream 123566 84829540 ~ 84829752 (+)
LOC110532822 LOC106577256 other upstream 250975 84373236 ~ 84410052 (+)
G94463 NA other upstream 612878 84045311 ~ 84048149 (+)
LOC110530763 LOC106577187 other upstream 1111437 83511117 ~ 83667671 (+)
LOC110530741 LOC106577189 other upstream 1187803 83452248 ~ 83484011 (+)
G93362 NA other upstream 1327451 83333266 ~ 83333576 (+)
G95702 NA other downstream 434166 85140140 ~ 85141006 (+)
G95821 NA other downstream 528847 85234821 ~ 85235394 (+)
G96133 NA other downstream 931773 85637747 ~ 85638055 (+)
G96577 NA other downstream 1705233 86411207 ~ 86413212 (+)
LOC118966024 LOC106562881 other downstream 1724228 86420114 ~ 86443279 (+)

Expression


Co-expression Network