Fish Transcriptome and Expression Database

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model fish

XLOC_019825 (CU570984.1)

Basic Information

Item	Value
gene id	XLOC_019825
gene name	CU570984.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007132.7
NCBI id	CM002905.2
chromosome length	45934066
location	41251431 ~ 41251548 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00039012
tccagcagctagctctctgcagctctcacaCGATtgtccactgaagctaagcagggctgttcccggtcagtacctggatgggaggccaCATGGGAGTTAAGCTAGGTTGCTCCCGGAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000101011

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00039012	True	118	rRNA	0.57	1	41251431	41251548

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_019824	msx2b	coding	downstream	103613	41144914 ~ 41147818 (-)
XLOC_019823	plac8l1	coding	downstream	181249	41016729 ~ 41070182 (-)
XLOC_019822	yipf5	coding	downstream	313049	40930177 ~ 40938382 (-)
XLOC_019821	elnb	coding	downstream	371078	40839857 ~ 40880353 (-)
XLOC_019820	limk1b	coding	downstream	416362	40805336 ~ 40835069 (-)
XLOC_019826	nsg2	coding	upstream	5223	41256771 ~ 41305748 (-)
XLOC_019827	cpeb4b	coding	upstream	59003	41310551 ~ 41369539 (-)
XLOC_019828	CABZ01034722.1	coding	upstream	99997	41351545 ~ 41351665 (-)
XLOC_019829	bnip1b	coding	upstream	284406	41535954 ~ 41545995 (-)
XLOC_019830	crebrf	coding	upstream	306334	41557882 ~ 41588129 (-)
XLOC_019814	NA	non-coding	downstream	671624	40528787 ~ 40579807 (-)
XLOC_019802	NA	non-coding	downstream	1326987	39923770 ~ 39924444 (-)
XLOC_019801	NA	non-coding	downstream	1339324	39905903 ~ 39912107 (-)
XLOC_019794	NA	non-coding	downstream	1889255	39359151 ~ 39362176 (-)
XLOC_019793	NA	non-coding	downstream	1914335	39328103 ~ 39337096 (-)
XLOC_019831	NA	non-coding	upstream	339322	41590870 ~ 41593163 (-)
XLOC_019838	NA	non-coding	upstream	792426	42043974 ~ 42048805 (-)
XLOC_019840	NA	non-coding	upstream	898812	42150360 ~ 42156252 (-)
XLOC_019849	NA	non-coding	upstream	1995159	43246707 ~ 43251824 (-)

Expression

Co-expression Network