LOC118966724 (LOC106613591)


Basic Information

Item Value
gene id LOC118966724
gene name LOC106613591
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 85161750 ~ 85171855 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989976.1
AAGAACACAAGCTCACAGTAGTTTATCGAAAGGTGCCGTGCGCCACGCCCAACTTTCACCAAGAATAACGTTGCGCAGGTGAACGAACCACTGAGCGGTGCGGCGGAGACATTAGACTGGTAGAGGATAGCAACAATGGATAATGAGAAGGAAACGTATTTACAAGATGACTAAAATGTATGTCGTTTACCCTGTGTAGAATTAATAGCCTATGGATATTTGGCGGCCAAAACTATTTCCAACCAGTATCAACAAAAAGTTTAAACTAGGCTAAATAGCATCAAAAAAGGAAAGTAGGCTATGGAGCAGCTAGGTGGCGCTTGGCTGGATACAAGTGCCCCTTTCCCGGATGAGATGCGGATTTCAGTCCGGAATGCGACATCGATGGCGGAGGCTCGGCTCAACTTGTCCCCCCGAACTAAACTGGTTCTGGAGGTcctgatggtgttgatgtgtctcGGCGCAGTCACAGgtaaCATCCTGGTGATTGTGATAGTGGCGGCCACCAAGACCTTCCACTGTGTGACATCAGTGCTCATTATGAACCTGGCCATCAGTGACCTGTTGGTCGGGGTTGGGGTCATGCCCTTCATAGCTCTCTCCATCATGAACAACGGATGGGTCGACTGTACTGacctgtgtctatatgtggggtACACCTCCTCAGTCTACTGTACAGCCTCAGTCCTGACCCTGGCAGCCATCGCCCTGGACCGCTACCACTCTATCATGGACTGTCTGCGCTACAGTTCCCACTGTACCCTATGGAGGAAgtgtgctgtggtgctgtggatCTGGCTCCAGGCCCTGGTCACCAGCTGTCCTCCTCTGCTGGGCTGGAGCACTGTGTCCTACATGGCTCCCATGTACAGCTGTGCGGTGAACTGGAAGAGCAGTCCCAGCTACACAGCCTTCATGGCTGCCCTGTCCTTCCTCATGCCTGCTGCAGTAATCCTCTTCTGTTACGTCATCATCGTCCGTGTAGCCCGGAGCCACGCCAGGAGGATCCACAACCTGGAGGACCAGCTCCAGAGAAACACTGGGATGCCGAGCTCCTCCTTCCCGACCGAGAGTACTTCTGAGCGGACTAGTCCGAGGTGTCTAGGTGCCCACGGTCCTTCCACCTCCAGGCTGGTGTATCATATGAGTGGGCGGTTTGTATCGGAGACCCATGGAGAGGTTGGGGATGAGTTTCCTTCAGGGTCAGATCATACTGCTGGAGCTCCACAGACCTCCAACCACCCAGACTCTACCTCCAGCTCCAATGCTGCATCCCGGAGACTGTTCTCCTTCCTGGCCCAACACGCCCCCCATGGCCACCCCCATCCGCCCCACCAGAACTCCAACTCCAATCACCTCCATCACCACGGGGTTGTACGTCTCTTCCTGGTTATCGCTGCCTTCTTCTTGTGTTGGACTCCATATATAGGCATTGCGCTAGTCCAGGCCACGGAGACCGCCCTATCGTGTAAGTCCTCCTTAGTTCCGCCCTCAGCGGTTACCTTCTCCTATTGGTTGGTTCTGTTGAACTCAGACATCAATCCTCTGCTGTATGCTCTGCTCAGTCAGAGGTTCCAGGGGGCTCTGCGGTGCCTGAAGCAGAAGATCAGAGTGCGTCTTGGGGGGAACGTGGTGGGGAGTGGGGGAGGCGAGactaggggggagggagaggaggggaggagcagtGAACCATGTGACCCATGTACTCTGACTTCCGTCCATCCCCGACCCCAGTGGCCCCGCCCCCATCCTGGCCTAGTATATTCTGGACCTGGGTCTAACATCCATAACACACTTGTAGGAGAGGGGCTGAGACGGGCCTACTGCTCTTCCGTCTTCACAGTCGACTCCAACTTCTCGGACAGCTCCAGGGagcatgtgtgtggtgtgttccgCCCTGGTAGCTCcgcctcttcctccacctcctcctgccCCCCGTGGCAGGACTCggttggaggaggtggggagaggagttcaAACAGGAGGTTGGAGTGCCTGCAGGTCCCCACCAGgacagcagagggcagcagtctGCCGTTCTCTGCAGccaccagagacagacaggcaaccTTCTTCTATGGACAGATCACAttctctgctctcctgctcctgactgCATACACCAGCTACACCTGGCATGGATCGCGCCCTGCAGACGATGGATTgctgggagagaagaggagtgccTCCAACGCCTCCGCCGACACCACCAATGGCACCACTACCCAACCCTCCTTCACCTGGTCCCAGTGGGATCCGGCTCGCTCTTccgagggagtatga

Function

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 1D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989976.1 True 2283 mRNA 0.56 6 85161750 85171855

Neighbor

gene id symbol gene type direction distance location
LOC110522386 LOC106577258 coding downstream 379871 84760098 ~ 84781879 (-)
LOC110532813 LOC106613040 coding downstream 830050 84291760 ~ 84331700 (-)
LOC110531033 LOC106577242 coding downstream 904801 84157529 ~ 84256949 (-)
LOC110531009 NA coding downstream 1034918 84122691 ~ 84126832 (-)
LOC110530947 LOC106577244 coding downstream 1051079 84097627 ~ 84110671 (-)
LOC110516660 tarbp1 coding upstream 89 85171944 ~ 85207269 (-)
LOC110510599 LOC106613623 coding upstream 41527 85213382 ~ 85244441 (-)
LOC110510598 LOC106594326 coding upstream 75483 85247338 ~ 85299641 (-)
LOC110519057 col19a1 coding upstream 186367 85358222 ~ 85624716 (-)
LOC118964521 NA coding upstream 458746 85630601 ~ 85632159 (-)
G95785 NA non-coding downstream 5827 85154592 ~ 85155923 (-)
G95779 NA non-coding downstream 24488 85136987 ~ 85137262 (-)
G95776 NA non-coding downstream 32697 85128454 ~ 85129053 (-)
G95774 NA non-coding downstream 35994 85124262 ~ 85125756 (-)
G95766 NA non-coding downstream 72675 85087607 ~ 85089075 (-)
G95796 NA non-coding upstream 8142 85179997 ~ 85181277 (-)
G95802 NA non-coding upstream 22490 85194345 ~ 85194808 (-)
G95803 NA non-coding upstream 25269 85197124 ~ 85197335 (-)
G95808 NA non-coding upstream 39691 85211546 ~ 85211758 (-)
G95965 NA non-coding upstream 41009 85212864 ~ 85213064 (-)
G95784 NA other downstream 2437 85157742 ~ 85159313 (-)
G95624 NA other downstream 181478 84979733 ~ 84980272 (-)
G95494 NA other downstream 432327 84728864 ~ 84729423 (-)
G94821 NA other downstream 957286 84203487 ~ 84204464 (-)
G96002 NA other upstream 175003 85346858 ~ 85351766 (-)
G97047 LOC106577388 other upstream 974154 86146009 ~ 86153321 (-)
G97176 NA other upstream 1220706 86392561 ~ 86393089 (-)

Expression


Co-expression Network