LOC110513561 (LOC106560234)


Basic Information

Item Value
gene id LOC110513561
gene name LOC106560234
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 85304274 ~ 85351424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989982.1
CTAAAGGCCTACTGAATGGGTGGATTAAAAAGGGAGGTCCTCCTCTACTTGTTATGCCATGTGATCCCACAATGCCTCAGCACAGGCCTTCAATCGCAGAGGGTGTATTTTTCCTCTGGAGCTGACATTCAAACTGAGCAGGGCCTGTGTCCTCCGATTAAGGTCGGAGAGGATGGTTTCCCAGGTTTTTATATCATGTCCCAGTTTCACATTGCTGAGCTGGCCAGAAGAGGAACTGTTCAAAAGGGGCCTGGATCAACCTCTCAGCATGTTGCCTACAAAATAGGGCCAGCATTCAACTTCAGAATTAACACAAGATCAGCGTATCCCCTTGGACTACCGGTTGAATTTGCGTTTGTGACAGTTTTACGAATGAACGGCAGTACCGTAACCAAGAACTGGAATATTTGGCAAATGCTAGATTTGAACGGCGAAGAGCAGCTTGCCGTTAGACTGAACGGAGAATCGCTCTCTCTTGAATTCACCTTCACAACATTGAATAAAACACGAGAGACGGCCGTTTTCCCTTTCCTACCGTTCCTCTTCAACTCTCAATGGCACAACATCTTACTGAAAGTCAGCAAGCGTTCTGTAACTCTGTTCGTGGATTGCATTATGGTGGACTCTCAGAACACACCCCAGAGAGGTATAGTCAACCTGGATGGATACACGTTGATTGGAAAGCTGAAGGATAACCCCGTTTTAGCAGTGCCATTTGAACTCCAATCGATGCACATTGATTGTGATGTGGGGCGACCACAGACCTGCAATGACCTACCAGCCAGGACGTCGGTAAGAACCATtgacaaaacagactgcaaccACGGTCAAATTATCAGACTTAATTATCAAAATAGCCAGTACAGAGGCTGGTATTATCTAGTCCAGGCAACCATTGTAAATAAACAACATGAAAGATGCTTTGATGCCTATGGTACCTCTGGCGGTTCAGTTGGTAGAAACGGATTCAGCCGGGTGACTTTTTTTGTCGGGGTCCGTCAACCCAACTCATCCAAGAAAAAGGAAAACATTTTTACCCGTTCTTGCTGTCCGGGAGAGGGAAGAGCAGGAGAGACCATGGCTCACGGGCAACTTTTTTGGGTACTTTTGGTGCAGATTGTCCTTATTTGCTCCACACAGAGGGCCTCGGGCCCCGTCGGCCCTCCAGGACCCGCAGGTGTCCCAGGAATTGATGGTGTCGCTGGTGAGAGGGGAGACGACGGAGAGGATGGCCCTGCTGGTCCTGATGGAGATGCAGGTAAACTAGGCTCAGCCGGGTTGCCAGGTGTGCCCGGGGCTGATGGTTTGACTGGTCCTACTGGAGACGAAGGTCCCGATGGTCCCCTTGGACAGAAAGGTGAACCCGGGAAACCAGGACCTCGTGGACTAGCTGGCGTTGGAGATGATGGACCCCCTGGACCCCCGGGGCCAGGAGGACTTCCAGGTGATTTGGGCAAAGGTGGACCCCCTGGTGCTATGGGAGTCAGAGGACCAACAGGACCCGGTGGATCAGCAGGGCCGAgaGGTGCAGCAGGGATGCAGGATTTGAGTGCCGAGCTGTGCCCTGGTGCCTGTCCACCTGGGACACCTGGTCATCCCGGCCTCCCTGGCATGAAGGGTCACAAAGGAGTaaaaggggaaggaggagagccTGGGAAACAAGGGCACAAGggtgaAGAGGGTGACCAGGGAACCACAGGGGACCTCGGATCCCAGGGCCCAACGGGTCCTCAGGGAATCAGAGGCTCCACTGGAATGATGGGGCCCAAAGGTGGACTGGGAGCACGAGGACATGATGGAGATCCAGGTCCCCAGGGTGTTGAAGGAGCCACTGGTGACCAAGGCCAGAGGGGCGTGATGGGCGAGTCTGGTCCTAAAGGTGATGAGGGATCTCAAGGTGGAAGAGGAATCACAGGTCTTCCTGGGCCCAAGGGAAAGGGTGGTTTGTCAGGAGTAGATGGCCGTGAAGGTATTCCTGGATTGCCAGGTGGAAAGGGCACCATTGGCAAGGCTGGGTCTCCAGGGGAGGTGGGGCTTCAGGGACTTCCTGGATTACCTGGTTCTCCTGGCTCTAAAGGAACTGGTGGAGAGAAGGGTAGCTCTGGAGAGGCAGGTCTTCTTGGAACAATAGGATCTGCTGGTAAAACAGGAGAGCAAGGCAAAGCAGGAGGTCTAGGACCCATTGGACCCATTGGCGGACCGGGAGACAGCGGAGTACAAGGACCAGCCGGTCCACCGGGCAAACCAGGGGCCAGGGGACCTAAAGGGGATCTTGGTCTTCCTGGTGTTCCCGGACCCCCAGGCCTCCccggagtgaagggagagaggGGAGAAGCTGGCGAGGGAGGACCTAAAGGGGAGCAGgggggacaAGGTTCTGAGGGAACCTCTGGAGACAAAGGAGATGTTGGTGACCAAGGGGAAGCTGGACCCAAAGGAGTGgttgGAAACCCAGGAGAGCCTGGTAACAGAGGGCCAGAGGGTAGCAGAGGGCAGCCTGGCATCGAGGGCCCAGCTGGTACTCCTGGACCACGTGGCATGCAGGGCAACAGGGGCGCACCAGGAATCAGGGGGTCACAGGGACCGGCGGGTAAAGAACCAAGCGATCAACACATCAGACAAGTCTGCATGAGAGTTATGCAAGAGCAGCTAGCCCAGTTGGCTGCCAGTCTAAGGAGGCCGGAGTCTGGAGCAGCGGGCCTGCCTGGTAAGCCAGGGCCTCCTGGTCCTGCCGGACCCCCAGGGGACAGTGGCTTCCCTGGGCAGGCTGGAGCAAGAGGACTGCCTGGCCTCAAAGGACCTCCAGGACTCCTAGGACTCAAAGGACCCAAAGGTGAATTGGGCGACAGAGGAGACCGAGGTCCCACGGTGCGAGGGGCCAAGGGCCAGCCAGGACCTCCCGGTCTACCAGGTGAGCCCGGAAAGCCTGGTTACGGCCAGGAGGGACGTGACGGCGAGAGAGGACCTCCAGGTGTTCCTGGCCAGGCTGGTGTACCTGGGCCTCCTGGTAATGCTGGCCCCAACGGCTACTGCGACCCATCGTCTTGCAACCTCAGACCGGGGGACATTGACACCAGCATCAAGGGCCCGGAGGGAACTAGAAACTAGAGCCACcatccagtggaggctggtgtcaCTTTAAATCTGAGGACTGGATCTAATGGCtgtaatggaatgaatggaaaAGTTTCAAACACCTTGGAttctgttccatttattccattagAGCCATCACTATGACCCATCCCCCCTTCACCAGCTTCCACTGCCCAACACCcagagaggggtagagacagagacagagactaagATGGCAGATGGACAGCTCTCCCACCCCAACCCTGGGAGCACACAACATCCTCACAGCCTCTCTACTCTGAAGGCTGTTGCTGTAAAGAGGTCCATTCTAACGTATCTGCAGTGTTTTGTGAGAGTGTTCTGTGCTAGCCAGATCTCTATGGGATATGAAGGAGTCTTCCACTTCCACAAATGCGAAACAAAACTAAGTATTTTGTTGCAAAACAATAATAATCCTGAACCTGTTTGGACGTGTAACAGTTTTTTACATGACAGATTTTctttttattttgttgttttcAGAAGTGGGTGCCCTATTTTAAGATATTCATGTTTTGAAGACTATATTTGTTTTTATTCCACCGTCCCTGTAAACCTAGATGTCCTTAATAACCACCAGACAAATATCTGTCCTTAATAACCACCAGACAAATGACCTGTCCTTAATAACAACCAGACAAATACCTGTCCTTAATAACCACCGGACAATTAACCTGTCCTTAATAACCACCGGACAATTAACCTGTCCTTAATAACCACCAGACAATCACCTGTCCTTAATAACAACCAGACAAATACCTGTCCTTAATAACCACCGGACAATTAACCTGTCCTTAATAACCACCAGACAATCACCTGTCCTTAATAACCACCAGACAAATACCTGTCCTTAATAACCACCAGACAAATCACCTGTCCTTAATAACCACCAGACAAATCACCTGTCCTTAATAACAACCAGACAATCACCTGTCCTTAATAACCACCGGACAATTCACCTGTCCTTAATAACCACCAGACATGCACCTGTCCTTAATAACCACCAGACAAATACCTGTCCTTAATAACCACCAGACAAATACCTGTCCTTAATAACCACCAGACAATCACCTGTCCTTAATAACCACCGGACAATTCACCTGTCCTTAATAACCACCAGACAAATACCTGTCCTTAATAACCACCAGACAAATACCTGTCCTTAATAACCACCAGACAAAACACCTGTCCTTAATAACCACCGGACAATTCACCTGTCCTTAATAACCACCAGACAATTTACCTGTCCTTAATAACCACCAGACAAATCACCTGTCCTTAATAACCACCAGACATTCATTCACCTGTCCTTAATAACCACCAGACATTCATTCACCTGTCCTTAATAACCACCGGACAATTAACCTGTCCTTAATAACCACCAGAGAAATTGCCTGTCCTTAATAACCACCAGACATGCACCTGTCCTTAACAACCACCGGACAATTCACCTGTCCTTAATAACCACCAGACAAATCACCTGTCCTTAATAACCACCAGACAAATCACCTGTCCTTAATAACCACCAGACATCACCTGTCCTTAATAACCACCAGACATGCACCTGTCCTTAATAACCACCGGACAATGCACCTGTCCTTAATAACCACCAGACAAATCACCTGTCCTTAATAACCACCAGACATGCACCTGTCCTAAATAACCACCGGACAATCACCTGTCCTTAATAACCACCAGACAAATCACCTGTCCTTAATAACCACCAGACAATACACCTGTCCTTAATAACCACCATACAATTCACCTGTCCTTAATAACCACCAGACAATTCACCTGTCCTTATTAACCACCCGACATTTACCTGTCCTTATTAACCATCTGGCTGTATTTGTAtgttccctttcctcctctcctctcactgaaACAGCTGTATACTGAAGCCAACATGTTGATTTCAGCAGCGGCTCCATCCACATCAAATCACGCTAATTCCTCCCCAATAAAGTAAAACCATAAAGCAATACCAGGATTGCCTTTAGCccaaagtgtatttttttgtatttgtaatgTACTGCATCATGTTCTATATTGAAGTATCAATTACCAAAGATAGACCTGGTGAAAAACAGTGATATCAGTTTGTACAGAATGTACCTGGGGTATTTCCAGCCCCCTGCTTTCCTTCCAGAAATCTAAATAAAGAGATAGAAGATAGGACTGACACCAAGCCACACTGACTGACGGACCTTCCATATGCGCTGTACATCTCTGTAAATTGTTTTCAATTGTGGTTAATTATATTTCCTACAAAAAATAACTATCCTAATGATTGAATGTGAGGTTTGTTCTCATTGTACAGTGTGAGGAGGATTCTGAGAGATGATTATTTTGAAAATAAATGGAATATTCCCTTTCACAGTA

Function

NR:

description
collagen alpha-1(IX) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989982.1 True 5499 mRNA 0.50 38 85304274 85351424

Neighbor

gene id symbol gene type direction distance location
LOC110511715 LOC106613617 coding upstream 123126 85177654 ~ 85181148 (+)
LOC110531368 slc35f3 coding upstream 144360 85012902 ~ 85159914 (+)
LOC118966016 NA coding upstream 407593 84893278 ~ 84896681 (+)
LOC110531225 LOC106577235 coding upstream 412789 84859937 ~ 84891485 (+)
LOC110532845 LOC106577236 coding upstream 598300 84661027 ~ 84705974 (+)
LOC110514631 lmbrd1 coding downstream 290179 85641603 ~ 85863008 (+)
LOC110531764 LOC106577387 coding downstream 790449 86141873 ~ 86153265 (+)
LOC110531757 LOC105008298 coding downstream 802832 86154256 ~ 86213640 (+)
LOC118966021 NA coding downstream 864154 86215568 ~ 86216902 (+)
LOC118966023 LOC106577312 coding downstream 1049318 86400742 ~ 86409832 (+)
G95813 NA non-coding upstream 87648 85216350 ~ 85216626 (+)
G95812 LOC106613623 non-coding upstream 89335 85213851 ~ 85214939 (+)
G95811 NA non-coding upstream 91056 85212869 ~ 85213218 (+)
G95807 NA non-coding upstream 93657 85210245 ~ 85210617 (+)
G95805 NA non-coding upstream 95385 85208544 ~ 85208889 (+)
G95872 NA non-coding downstream 10729 85362153 ~ 85364974 (+)
G95910 NA non-coding downstream 100502 85451926 ~ 85452203 (+)
G96135 NA non-coding downstream 288455 85639879 ~ 85640121 (+)
G96142 NA non-coding downstream 297548 85648972 ~ 85649221 (+)
G96160 NA non-coding downstream 340549 85691973 ~ 85692495 (+)
G95821 NA other upstream 68880 85234821 ~ 85235394 (+)
G95702 NA other upstream 163268 85140140 ~ 85141006 (+)
LOC110532822 LOC106577256 other upstream 894222 84373236 ~ 84410052 (+)
G94463 NA other upstream 1256125 84045311 ~ 84048149 (+)
LOC110530763 LOC106577187 other upstream 1754684 83511117 ~ 83667671 (+)
G96133 NA other downstream 286323 85637747 ~ 85638055 (+)
G96577 NA other downstream 1059783 86411207 ~ 86413212 (+)
LOC118966024 LOC106562881 other downstream 1078778 86420114 ~ 86443279 (+)
G96630 LOC106592896 other downstream 1108804 86460228 ~ 86572480 (+)
LOC118966033 LOC106562881 other downstream 1140645 86492069 ~ 86495729 (+)

Expression


Co-expression Network