LOC110514631 (lmbrd1)


Basic Information

Item Value
gene id LOC110514631
gene name lmbrd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 85641603 ~ 85863008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987666.1
TTCCGTGATGTCAATAGAAGCACATGGTCCGTGTTTGTTGCAGGAAGTGAAGATGGCGGACCAGTCGTTGCTATCTGAGTCTGCTCTCGGGTGGTCTATATTCGCCCTTGTATTTTTGGTGATCCTGTCCTTCTGTTGGGTCTACATCAGGAAGTACCAGAGCCGCCAAGAGAGTGAGGTCATCTCAACCATCACTGCAATATGCGCATTGGCCATTGCACTGATAACCTCTGCACTTCTTCCAGTGGATATATTCCTAGTGTCTTACATGAAGCACCCCAACGGTACTTACAAGGAGTGGGCAGAAAACAATGAGACACGAGGCCAAATCGAAGACACTGTGCTGTATGCTTATTACTcactgtactctctcctcttgTTCTGTGTCTTCCTGTGGATCCCCTTTGTCTACTTCTATTATGAGGAGAAGGATGATGACAACATCAACAAGTGTTCACAAGTGAAAAATGCTCTGAAATACACAATTGGATTCATCATCGTCTGTGCAGCACTGCTATTAATTGGGGCCTTCGTTCCTCTTGAAGCCCCACCTAATCAGAATGGTACCCAGTGGGAAAAGATGCAGTATCTGTTTGAGGAGCTGGGGAACAACCaTGGTGTACCAGCCCTGTCTTTCTCCATCAGCTCCTTGACCTTGATTGGCATGTTGGCAGTGATCACttacacgGCGTATGGTATGTCAGTGCTGCCGTTGAACCTGATTAAAGGGACACGCAGTGTGGTGTACGAGCGTCTGGAGAACACTGAAGATATTGAAGAGGTTGAACACCAGATGGAAAATATCAAAGCCAAGTGTGAGGACGGGCGTCCTCTGTCATCGCGGGACCGTCGTAACCTCCAGGAGTTTGAGGACAAGCTACAGGTGCTCCAGAGGAGGGGCAGGCACCTGGAGATAGCAGAGAGTCACTGCTGCACCAAGGTTGGATCTGCCCTCAGACCACTCAagattcTGCTGGGAATTTTCTTCATCCTGTTCGCTCTGCTGTTTGTTGTTGCTCTGTTCATTTCAAAtTTGGACAAAGCTCTTCACTCTGCTGGCATCAGTTCTGGCTTCATGGTGTTTGGCACCAACCTGACCAACCCTCTGAATGAACTCCTGCTGACTCTACAGCCTGTGTTCCCGTTGGATTATGTCCTGATCACTGTCATCACCATGTACTTTGTGTTCACCTCCATGGCCGGCATCAGGAACTTGGGCATCTGGTTCTTCTGGATACGGCTGTACAAGATCAGACCCAAGAGAACCCGTCCCCaggccctcctcttcctctgcatgATTCTACTGCTGATTGTCCTTCACACCAGCTTCATGATCTACAGCCTGGCCCCGCAGTACGTCATGTACGGGAGCCAGAACTACCTGCTGCAGGTGACCCCAGGCTGGAGCCCGATGCCACCAGAGAATAATACCACTTGGACTACCAAGACCTGTGATGCCGACGCACCTCAAGACGAATGCACAGTGACGAGGTCGTACCTTTTCCTCCACAAGTTCTGGTTCTTCAGTACCATCTACTACTTTGGTAACTGGGTGTTTATCGGGGTTTTCCTCATCGGCCTGTTGGTGTCATGTTGTAAGGGGAAGAAATCAGTGATCGAAGGCGAGGTGGAGGCAGATGACTCTGACATGAGTGAAGACGAATATGTCCACTGACAAGACCACAGCctgccagacctgggttcaaatactatttgaaatgttttaaatacttttgagcatttgctttagcctgcctgggaGTGCCGGGTGGGTGGGGTTTGCATGTTCTGGACTTTTCTATTGGTTCACCTGCAAAAGGCAAGCTTATCAAATACAATTGAAGtattttaaatcattttaaacagtgtgccctaatgaatatgacccaggtCTGCTACCTGCATGTACCAGGACACATTTAATCCGGATTGGTTTCTGTTACAGCTGGTTTGCTATAACATAAGAATTTAACATTTGGATTGTTCATACAAGGCAGTAAAACTTTAATTTGAACTGTTGTTTTCTGGTTTCTGCCTGAGATTGGTTATAATATTCCACAACGTTGTGTTGATACTGATGTATTATAACAGGAGAGGGTGATTGTGAGGTTGCTTTTTTCTATTAGGGCaactttttgtttttttgttcagtCAAGTGTCTTTGTTCAAAGCAGTATGTAAAACCctgattgcatcccaaatggcaccctatttcaaatatagtgcacttcttttgaccaaagccctatcggaccctggtcaaaagtagtgcactatatagggaatagtgttccatttgagATGTAGCCCTCTTTGTATTACTATGGGTATGTGCCTGTTGTTTCAAATGTCATCTCCACCAATTCCATGTTTTTATGTTTCCAAAAAGAAAGATTTAGTGTTACAAAATTCTGGTATATTTTCCAAAATGAGAGGATTCTGAATTTCCTGCTTATTTCCCCTCACTATTCTGGGAATCTTCAAATGGGGACGAAAAAGACAGAAAAATCAGGTGATTTGTGGAAAGTTCCCAACATTTTCCAACCCTAAGAAAGATCCCTGGTTGAGAACCAAACGGTGAGTTATTCAACAAGCCTGTGGTACTGGATGTTTTGGATCCTGAAAAGACAAGATGTTGTTGGGGAAACAGTCCAGGATTACTTTTTTATTTGAACTCAGCACATTTTTGTTGACATGTACATTTCTGTAATATATGGCTGGATAAATGTTTATTTTAGCCTTTAACAGATGTATTATTTTTAAGATTACTAACTTAGCACATTCAGCATGTTAACTTACAGCAACAAATATGGACTTGTATTTGATACCATATTGATAATGCACATTGCTGAGTTAAAATATATATTATCTTATCCCTGATTTTGGTCGTGTTTGGTTGGGCTTAGCTTGACTAACTGTTATTGCGTTGATGAATTGATTTGCTGTAAAGTTCTCTGAACATGAACTCAGCATAATATCACTTGACTACTGATCACAATGTCAATTTCCGTTATGAATTTGGAATAAAATATGAATTCTGAATTGATTATTGCTATGTTTATGTTGTTAATCTATCAATTTCTAACGTTAATTCAGGGATTGCTTTGGACCTTGAACTTGGGGTTGGCGTAGCCATTTGTTTTTCAAGGAATAGACATTAGTGATATTTATTGTGTCCTCTTTAAAACTGTTGATAATAAAGAGGCTGGCCCATC
>XM_036987670.1
TTCCGTGATGTCAATAGAAGCACATGGTCCGTGTTTGTTGCAGGAAGTGAAGATGGCGGACCAGTCGTTGCTATCTGAGTCTGCTCTCGGGTGGTCTATATTCGCCCTTGTATTTTTGGTGATCCTGTCCTTCTGTTGGGTCTACATCAGGAAGTACCAGAGCCGCCAAGAGAGTGAGGTCATCTCAACCATCACTGCAATATGCGCATTGGCCATTGCACTGATAACCTCTGCACTTCTTCCAGTGGATATATTCCTAGTGTCTTACATGAAGCACCCCAACGGTACTTACAAGGAGTGGGCAGAAAACAATGAGACACGAGGCCAAATCGAAGACACTGTGCTGTATGCTTATTACTcactgtactctctcctcttgTTCTGTGTCTTCCTGTGGATCCCCTTTGTCTACTTCTATTATGAGGAGAAGGATGATGACAACATCAACAAGTGTTCACAAGTGAAAAATGCTCTGAAATACACAATTGGATTCATCATCGTCTGTGCAGCACTGCTATTAATTGGGGCCTTCGTTCCTCTTGAAGCCCCACCTAATCAGAATGGTACCCAGTGGGAAAAGATGCAGTATCTGTTTGAGGAGCTGGGGAACAACCaTGGTGTACCAGCCCTGTCTTTCTCCATCAGCTCCTTGACCTTGATTGGCATGTTGGCAGTGATCACttacacgGCGTATGGTATGTCAGTGCTGCCGTTGAACCTGATTAAAGGGACACGCAGTGTGGTGTACGAGCGTCTGGAGAACACTGAAGATATTGAAGAGGTTGAACACCAGATGGAAAATATCAAAGCCAAGTGTGAGGACGGGCGTCCTCTGTCATCGCGGGACCGTCGTAACCTCCAGGAGTTTGAGGACAAGCTACAGGTGCTCCAGAGGAGGGGCAGGCACCTGGAGATAGCAGAGAGTCACTGCTGCACCAAGGTTGGATCTGCCCTCAGACCACTCAagattcTGCTGGGAATTTTCTTCATCCTGTTCGCTCTGCTGTTTGTTGTTGCTCTGTTCATTTCAAAtTTGGACAAAGCTCTTCACTCTGCTGGCATCAGTTCTGGCTTCATGGTGTTTGGCACCAACCTGACCAACCCTCTGAATGAACTCCTGCTGACTCTACAGCCTGTGTTCCCGTTGGATTATGTCCTGATCACTGTCATCACCATGTACTTTGTGTTCACCTCCATGGCCGGCATCAGGAACTTGGGCATCTGGTTCTTCTGGATACGGCTGTACAAGATCAGACCCAAGAGAACCCGTCCCCaggccctcctcttcctctgcatgATTCTACTGCTGATTGTCCTTCACACCAGCTTCATGATCTACAGCCTGGCCCCGCAGTACGTCATGTACGGGAGCCAGAACTACCTGCTGCAGAGCCCGATGCCACCAGAGAATAATACCACTTGGACTACCAAGACCTGTGATGCCGACGCACCTCAAGACGAATGCACAGTGACGAGGTCGTACCTTTTCCTCCACAAGTTCTGGTTCTTCAGTACCATCTACTACTTTGGTAACTGGGTGTTTATCGGGGTTTTCCTCATCGGCCTGTTGGTGTCATGTTGTAAGGGGAAGAAATCAGTGATCGAAGGCGAGGTGGAGGCAGATGACTCTGACATGAGTGAAGACGAATATGTCCACTGACAAGACCACAGCctgccagacctgggttcaaatactatttgaaatgttttaaatacttttgagcatttgctttagcctgcctgggaGTGCCGGGTGGGTGGGGTTTGCATGTTCTGGACTTTTCTATTGGTTCACCTGCAAAAGGCAAGCTTATCAAATACAATTGAAGtattttaaatcattttaaacagtgtgccctaatgaatatgacccaggtCTGCTACCTGCATGTACCAGGACACATTTAATCCGGATTGGTTTCTGTTACAGCTGGTTTGCTATAACATAAGAATTTAACATTTGGATTGTTCATACAAGGCAGTAAAACTTTAATTTGAACTGTTGTTTTCTGGTTTCTGCCTGAGATTGGTTATAATATTCCACAACGTTGTGTTGATACTGATGTATTATAACAGGAGAGGGTGATTGTGAGGTTGCTTTTTTCTATTAGGGCaactttttgtttttttgttcagtCAAGTGTCTTTGTTCAAAGCAGTATGTAAAACCctgattgcatcccaaatggcaccctatttcaaatatagtgcacttcttttgaccaaagccctatcggaccctggtcaaaagtagtgcactatatagggaatagtgttccatttgagATGTAGCCCTCTTTGTATTACTATGGGTATGTGCCTGTTGTTTCAAATGTCATCTCCACCAATTCCATGTTTTTATGTTTCCAAAAAGAAAGATTTAGTGTTACAAAATTCTGGTATATTTTCCAAAATGAGAGGATTCTGAATTTCCTGCTTATTTCCCCTCACTATTCTGGGAATCTTCAAATGGGGACGAAAAAGACAGAAAAATCAGGTGATTTGTGGAAAGTTCCCAACATTTTCCAACCCTAAGAAAGATCCCTGGTTGAGAACCAAACGGTGAGTTATTCAACAAGCCTGTGGTACTGGATGTTTTGGATCCTGAAAAGACAAGATGTTGTTGGGGAAACAGTCCAGGATTACTTTTTTATTTGAACTCAGCACATTTTTGTTGACATGTACATTTCTGTAATATATGGCTGGATAAATGTTTATTTTAGCCTTTAACAGATGTATTATTTTTAAGATTACTAACTTAGCACATTCAGCATGTTAACTTACAGCAACAAATATGGACTTGTATTTGATACCATATTGATAATGCACATTGCTGAGTTAAAATATATATTATCTTATCCCTGATTTTGGTCGTGTTTGGTTGGGCTTAGCTTGACTAACTGTTATTGCGTTGATGAATTGATTTGCTGTAAAGTTCTCTGAACATGAACTCAGCATAATATCACTTGACTACTGATCACAATGTCAATTTCCGTTATGAATTTGGAATAAAATATGAATTCTGAATTGATTATTGCTATGTTTATGTTGTTAATCTATCAATTTCTAACGTTAATTCAGGGATTGCTTTGGACCTTGAACTTGGGGTTGGCGTAGCCATTTGTTTTTCAAGGAATAGACATTAGTGATATTTATTGTGTCCTCTTTAAAACTGTTGATAATAAAGAGGCTGGCCCATC
>XM_036987674.1
TTCCGTGATGTCAATAGAAGCACATGGTCCGTGTTTGTTGCAGGAAGTGAAGATGGCGGACCAGTCGTTGCTATCTGAGTCTGCTCTCGGGTGGTCTATATTCGCCCTTGTATTTTTGGTGATCCTGTCCTTCTGTTGGGTCTACATCAGGAAGTACCAGAGCCGCCAAGAGAGTGAGGTCATCTCAACCATCACTGCAATATGCGCATTGGCCATTGCACTGATAACCTCTGCACTTCTTCCAGTGGATATATTCCTAGTGTCTTACATGAAGCACCCCAACGGTACTTACAAGGAGTGGGCAGAAAACAATGAGACACGAGGCCAAATCGAAGACACTGTGCTGTATGCTTATTACTcactgtactctctcctcttgTTCTGTGTCTTCCTGTGGATCCCCTTTGTCTACTTCTATTATGAGGAGAAGGATGATGACAACATCAACAAGTGTTCACAAGTGAAAAATGCTCTGAAATACACAATTGGATTCATCATCGTCTGTGCAGCACTGCTATTAATTGGGGCCTTCGTTCCTCTTGAAGCCCCACCTAATCAGAATGGTACCCAGTGGGAAAAGATGCAGTATCTGTTTGAGGAGCTGGGGAACAACCaTGGTGTACCAGCCCTGTCTTTCTCCATCAGCTCCTTGACCTTGATTGGCATGTTGGCAGTGATCACttacacgGCGTATGGTATGTCAGTGCTGCCGTTGAACCTGATTAAAGGGACACGCAGTGTGGTGTACGAGCGTCTGGAGAACACTGAAGATATTGAAGAGGTTGAACACCAGATGGAAAATATCAAAGCCAAGattcTGCTGGGAATTTTCTTCATCCTGTTCGCTCTGCTGTTTGTTGTTGCTCTGTTCATTTCAAAtTTGGACAAAGCTCTTCACTCTGCTGGCATCAGTTCTGGCTTCATGGTGTTTGGCACCAACCTGACCAACCCTCTGAATGAACTCCTGCTGACTCTACAGCCTGTGTTCCCGTTGGATTATGTCCTGATCACTGTCATCACCATGTACTTTGTGTTCACCTCCATGGCCGGCATCAGGAACTTGGGCATCTGGTTCTTCTGGATACGGCTGTACAAGATCAGACCCAAGAGAACCCGTCCCCaggccctcctcttcctctgcatgATTCTACTGCTGATTGTCCTTCACACCAGCTTCATGATCTACAGCCTGGCCCCGCAGTACGTCATGTACGGGAGCCAGAACTACCTGCTGCAGGTGACCCCAGGCTGGAGCCCGATGCCACCAGAGAATAATACCACTTGGACTACCAAGACCTGTGATGCCGACGCACCTCAAGACGAATGCACAGTGACGAGGTCGTACCTTTTCCTCCACAAGTTCTGGTTCTTCAGTACCATCTACTACTTTGGTAACTGGGTGTTTATCGGGGTTTTCCTCATCGGCCTGTTGGTGTCATGTTGTAAGGGGAAGAAATCAGTGATCGAAGGCGAGGTGGAGGCAGATGACTCTGACATGAGTGAAGACGAATATGTCCACTGACAAGACCACAGCctgccagacctgggttcaaatactatttgaaatgttttaaatacttttgagcatttgctttagcctgcctgggaGTGCCGGGTGGGTGGGGTTTGCATGTTCTGGACTTTTCTATTGGTTCACCTGCAAAAGGCAAGCTTATCAAATACAATTGAAGtattttaaatcattttaaacagtgtgccctaatgaatatgacccaggtCTGCTACCTGCATGTACCAGGACACATTTAATCCGGATTGGTTTCTGTTACAGCTGGTTTGCTATAACATAAGAATTTAACATTTGGATTGTTCATACAAGGCAGTAAAACTTTAATTTGAACTGTTGTTTTCTGGTTTCTGCCTGAGATTGGTTATAATATTCCACAACGTTGTGTTGATACTGATGTATTATAACAGGAGAGGGTGATTGTGAGGTTGCTTTTTTCTATTAGGGCaactttttgtttttttgttcagtCAAGTGTCTTTGTTCAAAGCAGTATGTAAAACCctgattgcatcccaaatggcaccctatttcaaatatagtgcacttcttttgaccaaagccctatcggaccctggtcaaaagtagtgcactatatagggaatagtgttccatttgagATGTAGCCCTCTTTGTATTACTATGGGTATGTGCCTGTTGTTTCAAATGTCATCTCCACCAATTCCATGTTTTTATGTTTCCAAAAAGAAAGATTTAGTGTTACAAAATTCTGGTATATTTTCCAAAATGAGAGGATTCTGAATTTCCTGCTTATTTCCCCTCACTATTCTGGGAATCTTCAAATGGGGACGAAAAAGACAGAAAAATCAGGTGATTTGTGGAAAGTTCCCAACATTTTCCAACCCTAAGAAAGATCCCTGGTTGAGAACCAAACGGTGAGTTATTCAACAAGCCTGTGGTACTGGATGTTTTGGATCCTGAAAAGACAAGATGTTGTTGGGGAAACAGTCCAGGATTACTTTTTTATTTGAACTCAGCACATTTTTGTTGACATGTACATTTCTGTAATATATGGCTGGATAAATGTTTATTTTAGCCTTTAACAGATGTATTATTTTTAAGATTACTAACTTAGCACATTCAGCATGTTAACTTACAGCAACAAATATGGACTTGTATTTGATACCATATTGATAATGCACATTGCTGAGTTAAAATATATATTATCTTATCCCTGATTTTGGTCGTGTTTGGTTGGGCTTAGCTTGACTAACTGTTATTGCGTTGATGAATTGATTTGCTGTAAAGTTCTCTGAACATGAACTCAGCATAATATCACTTGACTACTGATCACAATGTCAATTTCCGTTATGAATTTGGAATAAAATATGAATTCTGAATTGATTATTGCTATGTTTATGTTGTTAATCTATCAATTTCTAACGTTAATTCAGGGATTGCTTTGGACCTTGAACTTGGGGTTGGCGTAGCCATTTGTTTTTCAAGGAATAGACATTAGTGATATTTATTGTGTCCTCTTTAAAACTGTTGATAATAAAGAGGCTGGCCCATC

Function

symbol description
lmbrd1 Predicted to enable cobalamin binding activity. Predicted to be involved in protein localization to lysosome. Predicted to act upstream of or within insulin receptor internalization. Predicted to be located in clathrin-coated endocytic vesicle; endoplasmic reticulum membrane; and plasma membrane. Predicted to be active in lysosomal membrane. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblF. Orthologous to human LMBRD1 (LMBR1 domain containing 1).

NR:

description
probable lysosomal cobalamin transporter isoform X1

GO: NA

KEGG:

id description
K14617 LMBRD1; LMBR1 domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987666.1 False 3215 mRNA 0.43 17 85641603 85863008
XM_036987670.1 False 3200 mRNA 0.43 17 85641603 85863008
XM_036987674.1 True 3062 mRNA 0.42 15 85641603 85863008

Neighbor

gene id symbol gene type direction distance location
LOC110513561 LOC106560234 coding upstream 290179 85304274 ~ 85351424 (+)
LOC110511715 LOC106613617 coding upstream 460455 85177654 ~ 85181148 (+)
LOC110531368 slc35f3 coding upstream 481689 85012902 ~ 85159914 (+)
LOC118966016 NA coding upstream 744922 84893278 ~ 84896681 (+)
LOC110531225 LOC106577235 coding upstream 750118 84859937 ~ 84891485 (+)
LOC110531764 LOC106577387 coding downstream 278865 86141873 ~ 86153265 (+)
LOC110531757 LOC105008298 coding downstream 291248 86154256 ~ 86213640 (+)
LOC118966021 NA coding downstream 352570 86215568 ~ 86216902 (+)
LOC118966023 LOC106577312 coding downstream 537734 86400742 ~ 86409832 (+)
LOC118966024 LOC106562881 coding downstream 557106 86420114 ~ 86443279 (+)
G96135 NA non-coding upstream 1482 85639879 ~ 85640121 (+)
G95910 NA non-coding upstream 189400 85451926 ~ 85452203 (+)
G95872 NA non-coding upstream 276629 85362153 ~ 85364974 (+)
G95869 NA non-coding upstream 292774 85348428 ~ 85348829 (+)
G95867 NA non-coding upstream 293749 85347370 ~ 85347854 (+)
G96327 NA non-coding downstream 4694 85867702 ~ 85868564 (+)
G96353 NA non-coding downstream 56146 85919154 ~ 85919816 (+)
G96371 NA non-coding downstream 76034 85939042 ~ 85940933 (+)
G96391 NA non-coding downstream 111862 85974870 ~ 85975802 (+)
G96392 NA non-coding downstream 113750 85976758 ~ 85979427 (+)
G96133 NA other upstream 3548 85637747 ~ 85638055 (+)
G95821 NA other upstream 406209 85234821 ~ 85235394 (+)
G95702 NA other upstream 500597 85140140 ~ 85141006 (+)
LOC110532822 LOC106577256 other upstream 1231551 84373236 ~ 84410052 (+)
G94463 NA other upstream 1593454 84045311 ~ 84048149 (+)
G96577 NA other downstream 548199 86411207 ~ 86413212 (+)
G96630 LOC106592896 other downstream 597220 86460228 ~ 86572480 (+)
LOC118966033 LOC106562881 other downstream 629061 86492069 ~ 86495729 (+)
G97752 NA other downstream 1894033 87757041 ~ 87757546 (+)

Expression


Co-expression Network