LOC118966021


Basic Information

Item Value
gene id LOC118966021
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86215568 ~ 86216902 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053220.1
atctactgtacatgtcagtacagtcttagactgggattcaatatctactgtacatgttagtacagtcttagactgggattcaatatctactgtacatgtcagtacagtctTAGACTGGGATTCATTATCTACAATGCACCATTTAAAAGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGATACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGATACAGTGTTTACCGTGGATTTAGTGGCCATGAACGTGGGTACATTGCCTTTAAAACATGCATTACAGACAAAGCGGGATCGGATTGCATCCTGGCCCTAATTGACAATTCAATATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAAAATATTATATAACGTCCACAACAATATCGAAGGAATACCAGTCAAAATATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAACAATATTATATAACGTCCACAACAATATCGAAGGAATACCAGTCAACATTATTATATAACGTCCACAACAATATCGAAGGAATACCAGTCAACAATATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAAAATATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAACAATATTATATAACGTCCACAACAATATCGAAGGAATACCAGTCAACATTATTATATAACGTCCACAACAATATCGAAGGAATACCAGTCAACAATATTATATCATGTCCACAACAATATCGAAGGAATACCAGTCAACAATATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAACATTATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAACAATATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAACATTATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAACAATATTATGAAATAGTTGTCATTGTTATTTTT
>TU106550
gggattcaatatctactgtacatgtcagtacagtcttagactgggattcaatatctactgtacatgttagtacagtcttagactgggattcaatatctactgtacatgtcagtacagtctTAGACTGGGATTCATTATCTACAATGCACCATTTAAAAGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGAGACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGATACCCATTTAAAGGTAACTCCTGATTGAGCCGACAGATACAGTGTTTACCGTGGATTTAGTGGCCATGAACGTGGGTACATTGCCTTTAAAACATGCATTACAGACAAAGCGGGATCGGATTGCATCCTGGCCCTAATTGACAATTCAATATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAAAATATTATATAACGTCCACAACAATATCGAAGGAATACCAGTCAAAATATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAACAATATTATATAACGTCCACAACAATATCGAAGGAATACCAGTCAACATTATTATATAACGTCCACAACAATATCGAAGGAATACCAGTCAACAATATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAAAATATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAACAATATTATATAACGTCCACAACAATATCGAAGGAATACCAGTCAACATTATTATATAACGTCCACAACAATATCGAAGGAATACCAGTCAACAATATTATATCATGTCCACAACAATATCGAAGGAATACCAGTCAACAATATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAACATTATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAACAATATTATATAATGTCCACAACAATATCGAAGGAATACCAGTCAACATTATTATATAATGTCCACAACAATATCGAAGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053220.1 False 1251 mRNA 0.36 2 86215578 86216902
TU106550 True 1218 lncRNA 0.37 2 86215568 86216859

Neighbor

gene id symbol gene type direction distance location
LOC110531757 LOC105008298 coding upstream 1938 86154256 ~ 86213640 (+)
LOC110531764 LOC106577387 coding upstream 62851 86141873 ~ 86153265 (+)
LOC110514631 lmbrd1 coding upstream 352570 85641603 ~ 85863008 (+)
LOC110513561 LOC106560234 coding upstream 864154 85304274 ~ 85351424 (+)
LOC110511715 LOC106613617 coding upstream 1034430 85177654 ~ 85181148 (+)
LOC118966023 LOC106577312 coding downstream 183840 86400742 ~ 86409832 (+)
LOC118966024 LOC106562881 coding downstream 203212 86420114 ~ 86443279 (+)
LOC118966027 LOC106592896 coding downstream 242166 86459068 ~ 86529078 (+)
LOC118966031 NA coding downstream 256489 86473391 ~ 86480688 (+)
LOC118966033 LOC106562881 coding downstream 275203 86492069 ~ 86495729 (+)
G96518 NA non-coding upstream 74742 86140619 ~ 86140836 (+)
G96517 NA non-coding upstream 76930 86138239 ~ 86138648 (+)
G96396 NA non-coding upstream 229296 85984316 ~ 85986282 (+)
G96392 NA non-coding upstream 236151 85976758 ~ 85979427 (+)
G96537 LOC106569852 non-coding downstream 4343 86221245 ~ 86223867 (+)
G96538 NA non-coding downstream 7203 86224105 ~ 86229345 (+)
G96502 LOC106563028 non-coding downstream 16318 86233220 ~ 86237454 (+)
G96543 NA non-coding downstream 27398 86244300 ~ 86244999 (+)
G96544 NA non-coding downstream 29072 86245974 ~ 86309958 (+)
G96133 NA other upstream 577523 85637747 ~ 85638055 (+)
G95821 NA other upstream 980184 85234821 ~ 85235394 (+)
G95702 NA other upstream 1074572 85140140 ~ 85141006 (+)
LOC110532822 LOC106577256 other upstream 1805526 84373236 ~ 84410052 (+)
G94463 NA other upstream 2167429 84045311 ~ 84048149 (+)
G96577 NA other downstream 194305 86411207 ~ 86413212 (+)
G96630 LOC106592896 other downstream 243326 86460228 ~ 86572480 (+)
G97752 NA other downstream 1540139 87757041 ~ 87757546 (+)

Expression


Co-expression Network