LOC110531234 (LOC106563028)


Basic Information

Item Value
gene id LOC110531234
gene name LOC106563028
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86235239 ~ 86287517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987774.1
gtgGGAGTTAGGCCTAAGAGGGTACATGCTTTGTCGTCTTCTTTGACGGACTGCGTGGTTTTACTCAGTTTCATTACATTCGCTGTAGACTACCACATGAATGCATAATATATAAACAACTTGCACGTCACATTTCAAAACAAGTACTTGCATGGTGGCTTCAATGACAGGTTTAGATACTCTGCGGTGCCTTGTTAGGTCGAGAGCTCAACTACGATATCCACAATCCCTTTCGCATCATACGCGGCAGGTTTTTCTCGGATCGGAGTAAGCTACAATTCAAAACGAGACGTCTCTGTTTATGTTCAACACACCTCCAACATATTATTCTGCTGTCCGCACGGAGCGAAGcattaaaaaacaacatttgggGGAATGTAACTTTATACAGGAAGAAAGCTAACACGAAAGCGTCGTATGATTGGCCATTATGACTTTTTTTGTATCAAACATTGATATTTGTTGACAAATTGCCTTTGTTAGCTGGTAAACAAGCTAACTCAACGAACTTGGTCTGAAGCGGCGGGTGGTAGATGGTTGTCACCCGCTCACTGAGCGGTGTGTCTCGGCAGGAGGAGCGCATCGACTCCGCTGGTTGCAGCGGCGACAACCAACAGGCACATGCAGGATGAGGAGGCGGAGCTGAAGCTCAGCTGACCCCACCCATTTAGTGTGACCTCCCTCCTACCCTCACCCATCCAGCCAGCCGGGCCCATGTTCTCTCCAGAGCAGGAAaatatctccccctcctccacctcctcctccaaagTGCCGGTGAAATATGGAGAGCTCATGGTGCTGGGgtACAATGGCTCTCTACCCAACGGTGATCGAGGTAGGAGGAAAAGCCGTTTCAGTCTGTCTAAGAGACCCAAGGCTAATGGGGTCAAACCCAGCACAGTGCACGCTGCCTGCACCGCACAGGCAGCTAAGGCTATCAGCAACAAGGACCAACACAGCATCTCCTACACGTTATCCAGAGGTCAGACGGTGGTGGTGGAATATACTCATGATAACAACACAGACATGTTCCAGATTGGTCGTTCCACAGAGAGCCCTATAGACTTTGTGGTAACCGACACGGTGGCAGGGAGCCAGAGTAACTCAGACACCCAGTCAGTCCAGAGCACCATCTCTCGCTTCGCCTGCCGTGTCATGTGTCAGAGGACGCCCCCCTACACCGCACGCATCTACGCTGCCGGCTTCGACAGCTCCAAGAACATCTTCCTAGGGGAGAAGGCGGCTAAATGGAAGACGTGTGACGGTCAGATGGACGGTCTGACCACCAACGGTGTGCTGGTGATGCACCCTCGCCACGGCTTCACGGAGGACTCCAAACCGGGCGTCTGGAGAGAGATCTCTGTCTGCGGTAACGTCTTCACCCTCCGAGAGACCCGCTCCGCTCAGCAGCGGGGCAAgatgGTAGAGGCAGAGAGCCAGGAGCTGGTGGATGGCTCTCTGATAGACCTGTGTGGAGCCACGCTCCTGTGGCGCACGGCCGAGGGCCTGAGCCGCACCCCCACCATCAAACACCTGGAGGCGCTACGTCAGGAAATCAACGCAGCCCGGCCCCAGTGTCCCGTCGGCTTCAACACCCTGGCCTTCCCCTCCATGAGACGCAAGGACACCCCAGATGAGAAGCAGCCATGGGTCTATCTCCAGTGTGGCCACGTCCATGGTTACCACAACTGGGGAAGCCACCGGGACAGAGACAGGCTGGACCGGGACAGAGACAGGCTGGCCCGGGACAGAGACAGGCTGGACCGGGaccaggaggagagggagcagggCTGGAGCAGGGAGTGTCCTATGTGTCGAGCCACTGGGCCGTACGTTCCCCTCTGGTTGGGCTGCGAGGCAAGCTTCTATCTGGACACGGCTCCGCCCACCCACGCCTTCTCACCGTGTGGTCACGTGTGTTCCGAGAAGACGGCTGTGTTCTGGAGTCAGATCCCGCTGCCGCACGGAACACACACCTTCCACGCCTCCTGTCCCTTCTGCGCCCAGCAACTGAGTGGCGAGCAGGGATACGTTAGACTCATCTTCCAGGGCCCTCTCGACTAGGGGGACTATTTGTCCTTGGTCGGAACTACTTTCCTTTTTGGTCGCAAAGGAACGACGCTTAGAACCTCCAACTGCCTGGGATtttggggcggggggggggattttctggaatgttctctccgtttctgtttgtctctctgtgtttttaaGTGACCTTTTctatttttgatttttattggGAATGAAAACAAAGATTTCTATATTTTCATGTGAAACAAGAAGAGAAAGAAAGCAACACTACTGGGTGATATCATTTAGTTTTCTGAAAGAACTGTAAACTGTATTTATCTATTATACTAACATATGACCACACATGGGTTTATTCTCCTTTAGTGTTGCGATATTCATCCGCGTACATCTTTAAGACTTCAAGTCCTTTATTTCTGCCCAGACTTCATAGTAACTCAACCAGAAAATGAAGATAAAGCTACATTAGTTATCCTCCTTTACTCTTCTTGGTCAATGTGCTTCACTTCAATACTTTTTAACATTTGTATTGTGCTATTAGACTATAATAATCGCAGATCTCAAGTTCAAGGGTCGTATTCACTCGAAGCTGAACGGAGCAAACAGGAAGGGACCTACCTCCATTGGTCCAATGAGAACCgtttgttttccgttgcaaaacgttttgctacggtaTGCAGTAATGAGTACGACCCAAGGTGTGTTTTGGGGGTTCAGTTCTGTGTATAGTGGTATGCgtcgtgcccccccccccccccccatatcatGGATCTATTGAGTATTCATGACAACGTTCTGTCATATTGAAacctctgtgttgtctgtctgatggGGAGTTCTGGCTGTGTGTAagggggtgaagtttcccctaagTACAGAACTAGGAGCTGCTtctcctcccccaatcctaaccttaaccattagtggggaaaatgtgAAGCTGACttaagatcagcatctaggggcaactcCACCCAACACTGTGTTATAACTGTTCATTTTTTCCCACAAGGCATTGCCATGACCTTTCACATTTGAAGCAATAGATTTGGATACAGACTTCCTACTTTTCGAGCAACCTGGGGTTTGTAGTCCCGTGAGTGAGTTTGTCAGACAGCCTTTTCTGACGGTCTTCTCCCTTCAAAGCACAGGAGTAGAAACCAACAAGCCCAAACTGATGTGATGTAGtcattggagaggtgtgtgtgtgagcaaattgtTGTGCTTCCGCATTCATGAGTTAGAGCCTCTGTGTATGTTCTGATACTCTGCTCTGATTGGTTAGATAGATTGACAGCTATGTGATTGCTGTCTGTAGTTTTGATTGAGTGTTGAACACACACTGTTGCCTGTGTAAAGTAAAGACAGGTCATgttgaatgtcattctcttcttAAGCATCTAGACGTCACGATAATTCTGAATGAAACAGTATTTATAGGGACAAAATACCTCAGTGTAAAAAGTAGTCCTGAACTTTAACCTTCAGAAGTCAGTGGTGGAGGGGGGGCATTACATAGTATAACTTGTCTATGGATGGTATTTGATCATGTTATCACTGTATGAGTGTGTATTTATTGTACTGTCTGTacagtattttgtgtgtgtgttgtgttgtatacagaggtctctccactgctctctgaATCTGACTGATACTCACCTCAGGGAGAACACACATACCTCTGTCTGCCGtatagacacaccacacacacacacacacacacacacctctgtctgctgtatagacacaccacacacacacacacacctctgtctgCCGtatagacacaccacacacacacacctctgtctgCCGtatagaca

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase pellino homolog 1

GO:

id name namespace
GO:0008063 Toll signaling pathway biological_process

KEGG:

id description
K11964 PELI; pellino

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987774.1 True 3857 mRNA 0.49 8 86235239 86287517

Neighbor

gene id symbol gene type direction distance location
LOC110513354 LOC106569852 coding downstream 11287 86222196 ~ 86223952 (-)
LOC110531925 adgrb3 coding downstream 188063 85891577 ~ 86047176 (-)
LOC118964521 NA coding downstream 603080 85630601 ~ 85632159 (-)
LOC110519057 col19a1 coding downstream 610523 85358222 ~ 85624716 (-)
LOC110510598 LOC106594326 coding downstream 935598 85247338 ~ 85299641 (-)
LOC110531245 LOC106562987 coding upstream 11523 86299040 ~ 86349770 (-)
LOC110532855 LOC106562987 coding upstream 66163 86353680 ~ 86402164 (-)
LOC118966040 LOC106592896 coding upstream 314805 86602322 ~ 86650167 (-)
LOC118936335 LOC106592896 coding upstream 375998 86663515 ~ 86698225 (-)
LOC118966041 NA coding upstream 443414 86730919 ~ 86732537 (-)
G97106 NA non-coding downstream 15815 86218653 ~ 86219424 (-)
G97103 NA non-coding downstream 18371 86215548 ~ 86216868 (-)
G97105 NA non-coding downstream 20973 86213996 ~ 86214266 (-)
G97086 NA non-coding downstream 71936 86162154 ~ 86163303 (-)
G97156 NA non-coding upstream 38703 86326220 ~ 86328007 (-)
G97161 NA non-coding upstream 52789 86340306 ~ 86340770 (-)
G97163 NA non-coding upstream 56690 86344207 ~ 86345376 (-)
G97177 NA non-coding upstream 108388 86395905 ~ 86410402 (-)
G97178 NA non-coding upstream 129614 86417131 ~ 86417964 (-)
G97047 LOC106577388 other downstream 83900 86146009 ~ 86153321 (-)
G96002 NA other downstream 883473 85346858 ~ 85351766 (-)
LOC110510599 LOC106613623 other downstream 1010089 85213382 ~ 85244441 (-)
G95784 NA other downstream 1075926 85157742 ~ 85159313 (-)
G97176 NA other upstream 105044 86392561 ~ 86393089 (-)
G97251 NA other upstream 278960 86566477 ~ 86623311 (-)
G97308 NA other upstream 499540 86787057 ~ 86788052 (-)
G97535 NA other upstream 1006840 87294357 ~ 87294999 (-)
LOC110531505 LOC106597820 other upstream 1625785 87911053 ~ 87919678 (-)

Expression


Co-expression Network