LOC110531245 (LOC106562987)


Basic Information

Item Value
gene id LOC110531245
gene name LOC106562987
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86299040 ~ 86349770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987797.1
GGGAGCTGAGGCTGGATGCATCTCCCGCCAACCGACGACCATGGCCTCTGAGGCAGCAGCCACGGATGATGCTGCGACGACAGGAGGACCGCCCGAATGCACCGAGATGGAGGAGCAGTTGGCGGAGGGAAGGATGAAGGCAGACGAGGAagctcctcccccctccccggGGCTGGGGGGTTCGGCGATCCGGTGTCGGGAAGTGTGTCGGTCGTACGGTGAACTCAAAGTCCTGAGTAATCTCAACTTGACCGTGCCACAGGGACAGATCTACGGCCTGCTGGGTCCGAGTGGGTGTGGGAAGACCACACTGTTGAAATGCATTGTGGGAACACTGAAGATCTCCCGAGGGCACATCAGCGTGTTGGGGAAGCCGCCCGCATTTCCTGGTCACCAGGTCCCTGGGAGGATGGTGGGGTACATGCCACAGGACCTGGCGTTGTACAATGAGTTTACCATCAGTGACACTCTGACGTTCTTCGGAAGGATCCACGGCCTGTCATCTACGGACACCCAGGCACGCATGGACTTCCTGGTGGACTTCCTGGACCTACCTCAGAAGAGCAAACTAGTCCGAAATCTCAGcggAGGGCAGAAACGGAGGGTGTCTCTAGGAGCGGCCTTACTTCAGAACCCCCAGTTATTGATTCTGGATGAACCCACAGTCGGGGTGGACCCTGTGCTGAGAGCCAAGATCTGGCAGCATCTAGTAGAGATTGTGAAAACTGGAAAAGTATCAGTCGTCATCACCACTCACTACATAGAGGAGGCCAGGCAAGCCAACGTGGTGGGTCTGATGAGGAATGGCCGACTGTTGGCCGAGGGACATCCAGAAACCATGATGAAACAGCACAATGCACCGACCCTGGAGAAAGCCTTCCTGCAGCTGTGTGAGACCTCAGACCAGGTGGGCTCCAAACACAGCACCTCCCCTCTGGGCGGGGTCCTAGAGAGCAGCCAATCATTCGAGAGCGGCCGGGACGAGAGTCAACCAATCCTGGGAGTCGGGCCGGGACCAGTTGAAGAGCTGCCCAAATACTCAGcggacTGGAAGGTACGAGTCAGGCATGTGATGCCAAAGTGGAGGAACATCGCAGCCCTGATTATCAAGACCACGGTGCGGATGAAGAGAATGCCTggGTCCCTGTGTTTCCAGTTCCTTCTGCCAGTCATCCAGATCTCTCTGATGTGTCTGTGTATCGGAGGAGACCCCAAAGAAATACAGGTGGCTGTGGTCAACAATGAGACCTCCTCCAGCTCCTATAGCCAATCCCTGCTCTCCTTCCTGGACAACTCCAGCGTGCAACAGGTGAACCTGTCCCATGCTGAGGCTTTTTCAGGGGCCTATAATGGAGAGTACTGGGCCGTCATCGGGTTTGGAAAGAATTTTACCAGCTACCTGACCAAGAGGATGATCCAGCAGCAGGTCTCTAAGGAGGTGGTGGATGGAGGGTCGGTGCACGTCAGGTTGGACCAGACCAATCAACAGATCGCCATGATGCTTCAGAAGAAACTAGCCGATGCCTTTGAGGACTTCGTCCAGTATAAGATGGGGAGCATGTCTTACCTGGTCTCTCTTCCTGTCAAGTTTGAGGAGCCCATCTATGGCAGCATGAACTCAGACTTCACCACGTTTGTGACGCCAGGAGCCGTTCTGAGCATCACGTTCTACCTGGCAGTGGGCTTGACGGCTCTGTCCTTCGtgatagagaggaaggaggggctAATGGACAGGTGCTGGGTTGCAGgtgttAGTTCGTTGGAGACTGTGCTGGCCCATCTCATCTCCCAGCTGTTTGTCATCAGCATCCAGGTCATTCTACTACTGCTCTTAATGCTGCTCGTcttcaagatccCTAATGAGGGGAGCCTGGTGTTGGTTATAGCTCTGATTGGGCTGCAGGGTGTGACTGGCATCTCCTTTGGTCTGGTCATCTCATCTGCCATCGATGATGAACAGAACGCCAACCAGGCTGCCCTGGGTGTCTTCTACCCCAACCTCATCGTCAGTggtATAATCTGGCCCGTGGAGTGCATCCCCTATCCACTACGTTACATCAGTCTGGCCCTGCCCCAGACCTACGCTTCTGAAGCCCTACGATGCATCATGtacagagGCTGGGGTCTCTCCAGGATGATGGTGTGGCGAGGCTTCGCTGTCACCCTGGGCTGGAACACTTTCTTCGTCATCCTGGCCATCGTCATCCTCAAGCTGAGGACCTGAGACGTCTACCCGGGGGGGAGGGGGGCTTCCTAGTCTCAGGATGTCTGTGTCGGGGGACACTGTGCTTTAAGGGAGAAAGTGCTGGTTTTCCAGAGGTCATCTTGCAGACAGACCCTCACCCACACCGACACGCACAatcacaccccctcctcccccctcctgctTGCCAACTAGCTAACCCTGAGAACCAGAGTCTATGGGTGAAGGACTACTAGGTGGGGCGAATCATTCCAAATCTTGCAGGTAGAAATCTACTTCATAGAAAGGATAGCGTTCGCTATTCCATTAGAGAGTTGTGGCTGCTCTTTTATGTTGTCGTCTTTCATGCTGCAATGCTTTGAATGTTTCAACCGCCTGAATCTGCCCTGCAGGCAATGTTTCTCAACCCAGTTGTTTTACAGCCTACTTTATTACATACAGCCCAGCTAGCACATATGGTTCCTTTGAAGTTGTAGGAACGTATgttttttggtttcacattggttgtgggaagGAAGCCATagtttcctgaccggtaaaactGAAAAGTTCTTCAAACATTCTGAGAAGAGAAGTTCCAGGAACAAGCTAAATTGTCACGTCGTACTTCTCTGAACTAtctgagaacattcccaatgtcaaaccagttggagaacattaccaacattgaaatgaaatgtAGCTGTATTTGAACTTATATGAAACGTTGAAATACATAACGTAATGAAATaccaaaatacgttttttttgttgtcaagttcattaaatgtgctgagaatgttccaaagccaaacaactatcctgcaccattcccaggaagttgtgggaaggttgtatgctaAATAACCATAGAACAACCACACCCTCACTAAGCTCTATgtaacatatggttctcagaacgttatgtgcttgCTGGGAGTATTGTCTGATTCACAGTGCAGGGCCGGgccaagctgtactgggctggcctggtgaCGCGTCCACCATAGCTGCTGAAACCATGTTGGAAAGGATCATGCGAAGATAAAATATCAGAGCCAATAACGGTTCAGGTCGTTGCTATAGTGTGAATCAGACATCAGTCCAACGGCTGGTGGAGCCAGAGAACtgaggttgagaaacactgtggagtagaagtgctgatctagggtcaggtcctccctgtccataaTAATAATGATTTATTGTGATGCAAacggctaaactgatcctagatcaacacccttactctgagacgcttgataaTAGGGTTCCTGATCACTGTCATGTATGATCTGACCTTAGGCATGTTTAACTTGTACCACCTGTTCTCAACATAACACTGCATTGATTGGAGGGTTATATTTAGAGTTGCTGTTGAGGGTTTATGAATAACCTCTTCTACAGTATATGTTGACGGTATTTACACACATGATAGAGAgatttattatactatatatttcatattttttgaGGGAACTGTGTGTAAACAAAAGAATACAATTTGAATGTTTTTGGTATTGTGGTGTTACTGGATAGAGCTCTTCTTAGCTACTGGTGTGTGGGTAAAGAATGGCCAAGAAGGACTCCCGTTTCACAGACGTTTTACTGAAGGATGTTCTCTGATGATGGGAGTTCCTGTTCAGTAGATGTTCTTCTACAACTGGTGGCGACACCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGGGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCCGGCTCTGTCCAGGCGCTCGGCCACAGAACGATGTCCACGTCCGTGCGATTAGCATGCGAGCAAACCTCCCAGACAACTGACTAACCTCATCATGGCACGCCCACCAACCAATGAGCGACTAGCAGAAGGTGGACAGTAGAACCCACGGGGGAGGAGCTATCCCATCTGCACTACAGTATGGATAGAAGTATATTTTGATGAACTGAAATGCTAAACTCAATGTCggacaaaaaaaaaactaaacttaTTTTTGTCCACCGCTATTTCCAGGGGCCTCTGGGTCTGAATTCATAAAGCAGAGtggaagtgctgatctaggaccagttttgccatttaaatcataatgaatacgattacatggacaggaggggacctgatcctagaccagcctACCAATTCTGAGGTTATTTGTGGATATGAGCTCTGGTCTCTTATCTGTATTTTGTTCTGTTTTGCTTCCTGTTGCCTGTTTTGACAGGAAGTGGTGACCCTGTCTCTCTATTGGTTACCAGGTGATCTAACCTCCCAGTATTGGCTTGCTGCTGAAGTAGCCTTGGCTTCTGGTTATTGGTGGAATGCAGTATTTCTGGAGTCTGTTGTGTGCCTGTGCTTGCCTCATACCCCTTATAAAAAAGGGCAGTTTGATTGATTGTCCTGATGGTGATTGCATGGGGCTTGTCCCGTCGTGGTTGACAGTTCTGTCAGTGGTCGTGTTTGTTTATTGGGATCCCTGTTatcttttgcagaagcagcagctactcttcctggggtccacctaaaacacacaacatgacaagtaacaaaacactggtacactgatagacaaggacagtcacacacatcTAAAATACATGAATATACAAcaataaattgtgtgtgtgtgtgtgtgtgtgtgttacctgagaaGGTCATCAGCTTTTAATTACTTTTGTCTTCCCATCACCCCCCTGCTGCTGGACAGAGTGGTGGCTGCTGGGTAAAGCCCTTGGACATGTACCACAGCAAAGAGTATCCAGTCAGTTCTGTTTTAATGACATCTCTCCAGCATGTCCACTCATTGTGTTTTATTACTGCTGgtatattataatgtattattccatatGTGAAATCAAAGTGTCCAACAACAGATATTGAGGTCTCTTAACTTCCCTGAGCCGGGATCAATACATTTCTCTGATCCAATGGGAGCTCTCTATATATTTCAGAGTTTCTATTGGGTTTGGGGACGATTGACAGCAGCCCGTGGTATTCCGGGGGTTCTGAGATTTCATATCTTGTATTTCTAGTGTCCATCCTTCAAAGTCGTGCCATTGACCACTATTACTGACTGAGAAATATGTTTACACGCATCGAACCGACAAAGTGCTGATGACTTGAACCAGAAAAAGGCTGAGAAGAGCTCACGGCAGAAGGAGCTAGTTCACGTCACTCGGTTTCTGGTTGATAAATATGATAATAGAGAAGGTACCATGTTAACTTATGAAGCTAAAGCATCTACACCAGCATGTGTGTTACTGAAATTGATTGATGTTTTCTGAAGAATTGTGAATTTTAGACCGTAAGGCAACTTTTCAAGGTAACTGCAGAAGTTACATTTAccttgcttcccaaatggcaccctattccctacatagtgcactattttttttGACCaaacccctatgggccctggtcaaaagtagtgcactatatatatataaggaatagggttggCATTTGGGGTGCATTCTTAAACGTCCTTGTTTAACGTGACATATTTTAGAAAAGTCAAGTTTGtattatagagagagagtgtgttataCAAATCAAGTTTCAATTGAGGAAAGTGACATAAATATTTATATGTATCGCATTGGGGTCAAGAGGTCAAGGACCATCACGGCTGAACCTTGGAGTTTATTAAGTGTTAATTCATGTGGAACTCCATATTTATTGTGTTTCCTGTTTTGCTCACGCTCCGTTGCCTTTTATGTGTTTTGCTTTGTGCTGCTATTTCCCACATCTTAAGGGACACATCCACATTCATCTGGAATGTATGTGTCTTACAAATGACATAACAGGTGTTATAAACACGTGTGACTGCAGATGACTTGTGACTTATCTTATGACGACTGACATGACACAAACTGGAGTTGGGGTTGGAAATCCATCAAATCCTTCATTAGATTGTAGCCCTGTTATAACagacataatatatatatatatatatatatatatatataacctgttatGTCAGCTTATGACAACTGActtaacactgtcatgacaccaAACTGTTATCTAGGTCAGCTAGTTACCACTAGCCAACTAGCTTATAGATCATTTTAAGACTATTTATGTCATTTGTTTTGTCAATGATATGTAGGCCTTATGCCAGGGCATAGGGTTCAGGTAACGTGTTAGCTGCCATGTataggttgcgtcccaaatggcaccctattctctacatagtgcactcatttttaccagaggcctatgggtactggtcaaaggtagtgtacatTAAAGgcaatagggtggcatttggaacACAGCCATAGCGTCAGCTCTGCTGGTGTCTGTGACTCTATACTTCTACCTCCTCCATGTTCCCCCCCAAAGGGCCATTTATATATGTATCcataccagacctgggttcaaatactatttggaaTCTTTCGAATCATTTCATCCTTTGCTTTTAGCCTGTCTGGAATACgagatgggcggggtttgcagTTTTGcaactattctattggttccattgtgccaggcaaACATGATCGAGCCCAGCTAAAGGATTTTAAGTTACTGTATTTtgaatatactgaacaaaaataagcgcaagaagtgttggtcctatgttttatgagctgaaataaaagttcccagaaatgttccatgtgcacaaaaa

Function

NR:

description
ABC transporter G family member 23-like, partial

GO: NA

KEGG:

id description
K25167 ABCH1; ATP-binding cassette, subfamily H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987797.1 True 6982 mRNA 0.48 20 86299040 86349770

Neighbor

gene id symbol gene type direction distance location
LOC110531234 LOC106563028 coding downstream 11523 86235239 ~ 86287517 (-)
LOC110513354 LOC106569852 coding downstream 75088 86222196 ~ 86223952 (-)
LOC110531925 adgrb3 coding downstream 251864 85891577 ~ 86047176 (-)
LOC118964521 NA coding downstream 666881 85630601 ~ 85632159 (-)
LOC110519057 col19a1 coding downstream 674324 85358222 ~ 85624716 (-)
LOC110532855 LOC106562987 coding upstream 3910 86353680 ~ 86402164 (-)
LOC118966040 LOC106592896 coding upstream 252552 86602322 ~ 86650167 (-)
LOC118936335 LOC106592896 coding upstream 313745 86663515 ~ 86698225 (-)
LOC118966041 NA coding upstream 381161 86730919 ~ 86732537 (-)
LOC110518258 LOC105008825 coding upstream 434054 86783824 ~ 86864120 (-)
G97141 NA non-coding downstream 24770 86267122 ~ 86274270 (-)
G97138 NA non-coding downstream 33235 86263943 ~ 86265805 (-)
G97137 NA non-coding downstream 35450 86263248 ~ 86263590 (-)
G97133 NA non-coding downstream 42920 86255887 ~ 86256120 (-)
G97130 NA non-coding downstream 52093 86246050 ~ 86246947 (-)
G97177 NA non-coding upstream 46135 86395905 ~ 86410402 (-)
G97178 NA non-coding upstream 67361 86417131 ~ 86417964 (-)
G97191 NA non-coding upstream 69995 86419765 ~ 86420017 (-)
G97208 NA non-coding upstream 102830 86452600 ~ 86502883 (-)
G97224 NA non-coding upstream 116322 86466092 ~ 86538953 (-)
G97047 LOC106577388 other downstream 147701 86146009 ~ 86153321 (-)
G96002 NA other downstream 947274 85346858 ~ 85351766 (-)
LOC110510598 LOC106594326 other downstream 1038508 85247338 ~ 85299641 (-)
LOC110510599 LOC106613623 other downstream 1073890 85213382 ~ 85244441 (-)
G95784 NA other downstream 1139727 85157742 ~ 85159313 (-)
G97176 NA other upstream 42791 86392561 ~ 86393089 (-)
G97251 NA other upstream 216707 86566477 ~ 86623311 (-)
G97308 NA other upstream 437287 86787057 ~ 86788052 (-)
G97535 NA other upstream 944587 87294357 ~ 87294999 (-)
LOC110531505 LOC106597820 other upstream 1563532 87911053 ~ 87919678 (-)

Expression


Co-expression Network